Rh5BG415500

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001311
Physical Location & Seq
Forward (+)
67347269 .. 67354099
6831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG415500.1

Sequence Viewer

Length: 3186 bp
ATGAAAATGATAAAGCAAATTCGTCCTCTTCTCGATCCCCAACTGAAAATCATGAGTGATCAGGGAGAAAAGACTTGTCCTCTTTGCGCTGAGGAAATGGATTTGACAGATCAGCAATTGAAACCTTGCAAATGCGGTTATGAGATATGTGTTTGGTGTTGGCATCACATAATGGACATGGCTGAGAAGGATGACTCTGAGGGCCGGTGTCCTGCATGCCGTACCCCTTATGATAAGGAAAAGATTGTAGGGGCTGCGAAGTGTGAGAGATTGGTGGCTGAAATCCATACTGAGAGAAAGAAGTCTCAGAAGACAAAAGTTAAGCCAACCACTGAAGGAAGAAAGCAGCTTAGCAGTGTGCGAGTGATTCAACGGAACCTTGTTTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATCTACTGCAGCGTAAAGAATATTTTGCTCAATATGGGAAGGTTTTAAAGGTTTCTATGTCTCGGACAGCAGCTGGTGTCATTCAACAATTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAAGAGGAGGAAGCGGTTCGCTGTATTCAAAATGTACATGGGTTTCTATTGGATGGAAGATCTTTGAGGGCTTGCTTTGGTACCACAAAGTATTGTCACGCATGGCTAAGAAATGTGCCTTGCACCAATCCCGATTGTTTGTATCTGCACGAGGTTGGATGTCATGAGGATAGTTTCACTAAAGATGAAATAATTTCTGCATACACTAGGAGTAGAGTACAACAAATTACTGGTACTCTAAACCCTATGCAGCGGCGGTCAGGGAGTGTGTTGCCTCCACCACTAGATGATTACTGTAATAGCAGTTCTGCTTCTACCGCAGGGCCTGTTGTTAAAAATGGTTCAAGTAATACTGGAACCCTCATTAAAGGTTCTCCTCCAAATGGAAGCTCTGGGAGATCTATTGCTCTTCCAGCTGCAGCCTCATGGGGTACGCGTGGTTCAAATTCTCAACCACCAGCTATGCAAATAATATATTCAAACGGACATACAAAACAGAAACCTGATACAGTCAGTTGCACAGTGCCATTTTCTTTGGCTACTGTTTCTACTGGCCAGGCTTCTATAGTGCATAGCGATGCAGGAAAGAGGCTAACTTTGAATGATGACAGTCAGACTATGCAAGCTAAAGGTAAACCAGAATCACTGAAAATTGTGAAACAACACATTAGTGTGGATAGTCAAATTGCCCTGTCGGACAATCCTGCTGCACCCGATGAAGCTTCTGCTTCTGTTAATGTTAGCAGTCAGTTATCTTGTCCACCTGCATCCATGGACAACAATAGAGGCAGTAGTATGCAGCCAACTTGCACTGCCACCAACCATAATCGGCAGCCTTTTAGTTCCTGTCATGAAAGTGAAAGTATTGTTTCTAATGAAGAAGCCACCCAAAGCTTATGCTCCGATATATCTTTAATGAGCATTGATAGAAATTCAATGCTTGATCATTCTGGTGTAGTCAGACCTAATAATTCAGCTTCAGATAATTCATATATTAAATCACCTCGGGACCAAGGGTTACAACAATATTGTGCTGAACAGCCTAGAGAATCTCCTATAACAACTGAGAGAGCAGTAACAAGAGAACAATCCAACTGGTTATCAGAGTCACAACCATTACCTAGTATATCTTCTGAGGTGGAGGAGGATGTACTATCTTTTGATAATCAAAGACTCAAGGACCCAGAAGTGAGTCGTGCGCCGTATCTGTCTAGTGTGCCCAATGCAGTCCATGTTCCAAATCACTCTAGGTCTCCGTTGCTACCTAGTGAGGGTTATGGTGCAGTTTATTCAAGTGCTGATCGCCTTTTTGTAGATAATAAAATTAGGGACAGCTCACTTCTATCTTCGACCAACATTCCGGCACAATCTAATGGTTACCATGAGAATTTTGTAAGCAGCTCTTCTGGTTTAGAGAAGCCTTTGGAGCATTCATTTCTTAACCGAAATGAAAGCCTGGGGAAGCATGGTCGAAGATTCTTGGGTGATGCAGCTAATCCTGATTTCAGTAATGCTGTAGACAAGGGAGAGAGCAGCATAATCTCAAATATATTATCAATGGACTTTGACACTTGGGATGACCCAATAACATCGCCTCAAAATTTCTCCAAGTTTTTGGGTGAATCTGATAGACAGTCTGGAGCTCAGAAACATTCCAGTTCGTGGAAGGTGCCAAATAATAATCAGTCAAGATTCTCTTTTGCAAGACAGGAGGATTCTAGAAATCAGGCATTTGATCTACAGTCATCTCAGAATGTCATTGGGCGGTTGTCACAGAACCAGGCACAGAACCAAGGATTCCATCATGGCTATTCTGAAAATCGAGATTTATGTTTGGATAATTTTGGAAGTGGAAATGGTTTTGCTTCAAGTACTTTTGAAGATTCTGAAAATCATGCTAACAATCTTTTAGCCTTCTCTTCTAACAAGCTTTCTGCAGTTTCAAGGGCTCAAATCTCTGCTCCTCCGGGATTCTCTGTGCCAAGCAGGGCCCCACCTCCGGGCTTTACTTCTCAAGAGAGAATAGAGCATGATTTTGACTCACTGTCTGGGAATCTTTTGCATGATAACTCCTCTCTGTTGAGAAATGCCTATCAACCTCAGCCCACTGGGAATATTGGTAGCTCTGTGGATATTGAGTTTATGGATCCTGCTATATTGGCAGTTGGTAAAGGGAGACTGCAAGGTGGGCTTAACAACCCTGGTGTAGATATGAGATCCAACTTCCCTTCACAGTTAAGTGCCTTTGAAAACGATGCAAGACTTCAGCTCTTGATGCAAAGATCCTTCTCCCAACAACAAAACCTTAGGTATCCTGATTTTGGGGATGGCTATTCTCATGTCAATGATAACTATGGAATGTCTTCGAGACTTTTGGATCAATCTCAGGCAAGCAATATGTCGCCTTTTGCTCAACTCTCTCTCCAACAATCCAGAAATAATCGGTCCATGTCAAATGGCCATTGGGATGGGTGGAATGAGGTTCAGGGCGGTAACACTATGGGTATGGCAGAGCTCCTGAGAAATGAGAGAGTAAATGAGAGACTAGGATACAATAAGTTCTATTCTGGTTATGAAGAATCAAAGTTTCGGATGCCCAGTTCTGGCGATCTGTATAACAGAACCTTTGGGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

1061

Amino Acids

116.99

Weight (kDa)

6.14

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_4 PF14570 26 - 78 1.7e-19 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1321
Acc36I ACCTGC 1 cut(s) 1321
Acc65I GGTACC 1 cut(s) 629
AccB1I GGYRCC 2 cut(s) 629, 2218
AccB7I CCANNNNNTGG 1 cut(s) 2211
AccI GTMKAC 1 cut(s) 2067
AccII CGCG 1 cut(s) 985
AciI CCGC 7 cut(s) 135, 563, 802, 805, 867, 2314, 3039
AclWI GGATC 6 cut(s) 29, 2690, 2703, 2760, 2826, 2934
AcoI YGGCCR 2 cut(s) 1102, 3007
AcsI RAATTY 5 cut(s) 18, 994, 1480, 1936, 2149
AcuI CTGAAG 3 cut(s) 354, 1512, 2798
AfaI GTAC 8 cut(s) 223, 585, 631, 768, 784, 982, 1701, 2422
AfiI CCNNNNNNNGG 7 cut(s) 932, 1820, 2211, 2548, 2549, 2870, 3152
AflIII ACRYGT 2 cut(s) 524, 983
AhdI GACNNNNNGTC 1 cut(s) 2593
AjnI CCWGG 4 cut(s) 1104, 2004, 2328, 2749
AleI CACNNNNGTG 1 cut(s) 1218
AloI GAACNNNNNNTCC 2 cut(s) 3133, 3165
Alw21I GWGCWC 2 cut(s) 2194, 3066
Alw26I GTCTC 6 cut(s) 309, 486, 1806, 2719, 2911, 3085
AlwI GGATC 6 cut(s) 29, 2690, 2703, 2760, 2826, 2934
AlwNI CAGNNNCTG 2 cut(s) 494, 875
Ama87I CYCGRG 1 cut(s) 1554
AoxI GGCC 5 cut(s) 202, 872, 1102, 2538, 3007
ApaI GGGCCC 1 cut(s) 2542
ApoI RAATTY 5 cut(s) 18, 994, 1480, 1936, 2149
Asp700I GAANNNNTTC 2 cut(s) 564, 2911
Asp718I GGTACC 1 cut(s) 629
AspLEI GCGC 2 cut(s) 89, 1750
AspS9I GGNCC 7 cut(s) 202, 872, 1558, 1729, 2538, 2539, 2994
AsuC2I CCSGG 2 cut(s) 2517, 2550
AsuHPI GGTGA 3 cut(s) 1542, 2045, 2180
AvaI CYCGRG 1 cut(s) 1554
AvaII GGWCC 3 cut(s) 1558, 1729, 2994
AxyI CCTNAGG 1 cut(s) 2855
BaeGI GKGCMC 2 cut(s) 1770, 2542
BalI TGGCCA 2 cut(s) 1104, 3009
BamHI GGATCC 1 cut(s) 2695
BanI GGYRCC 2 cut(s) 629, 2218
BanII GRGCYC 4 cut(s) 2194, 2500, 2542, 3066
BauI CACGAG 1 cut(s) 698
BbsI GAAGAC 2 cut(s) 317, 2904
Bbv12I GWGCWC 2 cut(s) 2194, 3066
BbvCI CCTCAGC 2 cut(s) 90, 2649
BccI CCATC 4 cut(s) 596, 2358, 2870, 3011
BceAI ACGGC 2 cut(s) 204, 1735
BciT130I CCWGG 4 cut(s) 1106, 2006, 2330, 2751
BciVI GTATCC 2 cut(s) 2871, 3092
BclI TGATCA 2 cut(s) 58, 1492
BcnI CCSGG 2 cut(s) 2517, 2550
BcoDI GTCTC 6 cut(s) 309, 486, 1806, 2719, 2911, 3085
BfaI CTAG 9 cut(s) 756, 833, 1593, 1671, 1761, 1797, 1815, 2268, 3095
BfmI CTRYAG 6 cut(s) 428, 966, 1113, 2064, 2288, 2484
BfuAI ACCTGC 1 cut(s) 1321
BfuI GTATCC 2 cut(s) 2871, 3092
BglII AGATCT 3 cut(s) 421, 608, 947
BlpI GCTNAGC 1 cut(s) 350
BmcAI AGTACT 1 cut(s) 2422
Bme1390I CCNGG 6 cut(s) 1106, 2006, 2330, 2517, 2550, 2751
Bme18I GGWCC 3 cut(s) 1558, 1729, 2994
BmeRI GACNNNNNGTC 1 cut(s) 2593
BmeT110I CYCGRG 1 cut(s) 1554
BmgT120I GGNCC 7 cut(s) 202, 872, 1558, 1729, 2538, 2539, 2994
BmiI GGNNCC 9 cut(s) 377, 631, 907, 1559, 1731, 2220, 2540, 2541, 2697
BmrFI CCNGG 6 cut(s) 1106, 2006, 2330, 2517, 2550, 2751
BmrI ACTGGG 2 cut(s) 2667, 3141
BmsI GCATC 7 cut(s) 172, 1117, 1325, 2026, 2794, 2814, 3132
BmuI ACTGGG 2 cut(s) 2667, 3141
BpiI GAAGAC 2 cut(s) 317, 2904
BpmI CTGGAG 1 cut(s) 2208
Bpu10I CCTNAGC 2 cut(s) 90, 2649
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 1709, 2547
BpuMI CCSGG 2 cut(s) 2517, 2550
BsaBI GATNNNNATC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 1806
BsaJI CCNNGG 6 cut(s) 1320, 1553, 1561, 2005, 2341, 2749
BsaXI ACNNNNNCTCC 2 cut(s) 2955, 2985
Bsc4I CCNNNNNNNGG 7 cut(s) 932, 1820, 2211, 2548, 2549, 2870, 3152
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 7 cut(s) 784, 907, 1105, 1649, 2205, 2662, 3147
Bse21I CCTNAGG 1 cut(s) 2855
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 4 cut(s) 1106, 2006, 2330, 2751
BseDI CCNNGG 6 cut(s) 1320, 1553, 1561, 2005, 2341, 2749
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 7 cut(s) 932, 1820, 2211, 2548, 2549, 2870, 3152
BseNI ACTGG 7 cut(s) 784, 907, 1105, 1649, 2205, 2662, 3147
BseRI GAGGAG 5 cut(s) 569, 915, 1706, 2502, 2611
BseSI GKGCMC 2 cut(s) 1770, 2542
BsgI GTGCAG 3 cut(s) 680, 1242, 1851
Bsh1236I CGCG 1 cut(s) 985
BshFI GGCC 5 cut(s) 204, 874, 1104, 2540, 3009
BshNI GGYRCC 2 cut(s) 629, 2218
BsiHKAI GWGCWC 2 cut(s) 2194, 3066
BsiHKCI CYCGRG 1 cut(s) 1554
BsiSI CCGG 4 cut(s) 205, 1910, 2516, 2549
BslFI GGGAC 2 cut(s) 1571, 1892
BslI CCNNNNNNNGG 7 cut(s) 932, 1820, 2211, 2548, 2549, 2870, 3152
BsmAI GTCTC 6 cut(s) 309, 486, 1806, 2719, 2911, 3085
BsmFI GGGAC 2 cut(s) 1571, 1892
BsmI GAATGC 1 cut(s) 1978
BsnI GGCC 5 cut(s) 204, 874, 1104, 2540, 3009
Bso31I GGTCTC 1 cut(s) 1806
BsoBI CYCGRG 1 cut(s) 1554
Bsp120I GGGCCC 1 cut(s) 2538
Bsp1286I GDGCHC 5 cut(s) 1770, 2194, 2500, 2542, 3066
Bsp1407I TGTACA 1 cut(s) 583
Bsp1720I GCTNAGC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 1320
BspACI CCGC 7 cut(s) 135, 563, 802, 805, 867, 2314, 3039
BspANI GGCC 5 cut(s) 204, 874, 1104, 2540, 3009
BspFNI CGCG 1 cut(s) 985
BspHI TCATGA 3 cut(s) 51, 712, 1399
BspLI GGNNCC 9 cut(s) 377, 631, 907, 1559, 1731, 2220, 2540, 2541, 2697
BspMAI CTGCAG 3 cut(s) 432, 970, 2488
BspMI ACCTGC 1 cut(s) 1321
BspPI GGATC 6 cut(s) 29, 2690, 2703, 2760, 2826, 2934
BspQI GCTCTTC 2 cut(s) 963, 1957
BspT107I GGYRCC 2 cut(s) 629, 2218
BspTNI GGTCTC 1 cut(s) 1806
BsrFI RCCGGY 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 583
BsrI ACTGG 7 cut(s) 784, 907, 1105, 1649, 2205, 2662, 3147
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 6 cut(s) 1320, 1553, 1561, 2005, 2341, 2749
BssSI CACGAG 1 cut(s) 698
BssT1I CCWWGG 3 cut(s) 1320, 1561, 2341
Bst2BI CACGAG 1 cut(s) 698
Bst2UI CCWGG 4 cut(s) 1106, 2006, 2330, 2751
Bst4CI ACNGT 9 cut(s) 845, 1060, 1072, 1093, 1160, 2184, 2292, 2595, 2784
Bst6I CTCTTC 4 cut(s) 33, 963, 1957, 2473
BstAUI TGTACA 1 cut(s) 583
BstC8I GCNNGC 4 cut(s) 217, 622, 1173, 2941
BstDSI CCRYGG 1 cut(s) 1320
BstEII GGTNACC 1 cut(s) 1925
BstFNI CGCG 1 cut(s) 985
BstHHI GCGC 2 cut(s) 89, 1750
BstMAI GTCTC 6 cut(s) 309, 486, 1806, 2719, 2911, 3085
BstMWI GCNNNNNNNGC 6 cut(s) 866, 962, 1975, 2708, 2737, 2824
BstNI CCWGG 4 cut(s) 1106, 2006, 2330, 2751
BstNSI RCATGY 2 cut(s) 219, 528
BstPI GGTNACC 1 cut(s) 1925
BstSCI CCNGG 6 cut(s) 1104, 2004, 2328, 2515, 2548, 2749
BstSFI CTRYAG 6 cut(s) 428, 966, 1113, 2064, 2288, 2484
BstSLI GKGCMC 2 cut(s) 1770, 2542
BstUI CGCG 1 cut(s) 985
BstV2I GAAGAC 2 cut(s) 317, 2904
BstX2I RGATCY 6 cut(s) 421, 608, 947, 2695, 2765, 2831
BstXI CCANNNNNNTGG 2 cut(s) 2164, 3017
BstYI RGATCY 6 cut(s) 421, 608, 947, 2695, 2765, 2831
Bsu36I CCTNAGG 1 cut(s) 2855
BsuI GTATCC 2 cut(s) 2871, 3092
BsuRI GGCC 5 cut(s) 204, 874, 1104, 2540, 3009
BtgI CCRYGG 1 cut(s) 1320
BtgZI GCGATG 2 cut(s) 1140, 2124
BtsI GCAGTG 2 cut(s) 361, 1359
BtsIMutI CAGTG 7 cut(s) 330, 361, 1077, 1193, 1359, 2591, 2655
BveI ACCTGC 1 cut(s) 1321
Cac8I GCNNGC 4 cut(s) 217, 622, 1173, 2941
CaiI CAGNNNCTG 2 cut(s) 494, 875
CciI TCATGA 3 cut(s) 51, 712, 1399
CfoI GCGC 2 cut(s) 89, 1750
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 7 cut(s) 202, 872, 1558, 1729, 2538, 2539, 2994
Csp6I GTAC 8 cut(s) 222, 584, 630, 767, 783, 981, 1700, 2421
CviQI GTAC 8 cut(s) 222, 584, 630, 767, 783, 981, 1700, 2421
DraI TTTAAA 1 cut(s) 468
DriI GACNNNNNGTC 1 cut(s) 2593
EaeI YGGCCR 2 cut(s) 1102, 3007
Eam1104I CTCTTC 4 cut(s) 33, 963, 1957, 2473
Eam1105I GACNNNNNGTC 1 cut(s) 2593
EarI CTCTTC 4 cut(s) 33, 963, 1957, 2473
Ecl136II GAGCTC 2 cut(s) 2192, 3064
Eco130I CCWWGG 3 cut(s) 1320, 1561, 2341
Eco24I GRGCYC 4 cut(s) 2194, 2500, 2542, 3066
Eco31I GGTCTC 1 cut(s) 1806
Eco47I GGWCC 3 cut(s) 1558, 1729, 2994
Eco53kI GAGCTC 2 cut(s) 2192, 3064
Eco57I CTGAAG 3 cut(s) 354, 1512, 2798
Eco81I CCTNAGG 1 cut(s) 2855
Eco88I CYCGRG 1 cut(s) 1554
Eco91I GGTNACC 1 cut(s) 1925
EcoICRI GAGCTC 2 cut(s) 2192, 3064
EcoO109I RGGNCCY 4 cut(s) 872, 1729, 2538, 2539
EcoO65I GGTNACC 1 cut(s) 1925
EcoRII CCWGG 4 cut(s) 1104, 2004, 2328, 2749
EcoT14I CCWWGG 3 cut(s) 1320, 1561, 2341
EcoT38I GRGCYC 4 cut(s) 2194, 2500, 2542, 3066
ErhI CCWWGG 3 cut(s) 1320, 1561, 2341
FalI AAGNNNNNCTT 6 cut(s) 1936, 1968, 2230, 2262, 2724, 2756
FaqI GGGAC 2 cut(s) 1571, 1892
FbaI TGATCA 2 cut(s) 58, 1492
FblI GTMKAC 1 cut(s) 2067
FokI GGATG 9 cut(s) 203, 614, 720, 1303, 1709, 2138, 2888, 3029, 3154
FriOI GRGCYC 4 cut(s) 2194, 2500, 2542, 3066
FspBI CTAG 9 cut(s) 756, 833, 1593, 1671, 1761, 1797, 1815, 2268, 3095
GlaI GCGC 2 cut(s) 88, 1749
GsuI CTGGAG 1 cut(s) 2208
HaeIII GGCC 5 cut(s) 204, 874, 1104, 2540, 3009
HapII CCGG 4 cut(s) 205, 1910, 2516, 2549
HhaI GCGC 2 cut(s) 89, 1750
Hin6I GCGC 2 cut(s) 87, 1748
HinP1I GCGC 2 cut(s) 87, 1748
HindIII AAGCTT 3 cut(s) 1269, 1441, 2477
HpaII CCGG 4 cut(s) 205, 1910, 2516, 2549
HphI GGTGA 3 cut(s) 1542, 2045, 2180
Hpy166II GTNNAC 4 cut(s) 385, 1184, 1310, 2068
Hpy8I GTNNAC 4 cut(s) 385, 1184, 1310, 2068
HpyAV CCTTC 7 cut(s) 181, 329, 454, 2209, 2473, 2787, 2845
HpyCH4III ACNGT 9 cut(s) 845, 1060, 1072, 1093, 1160, 2184, 2292, 2595, 2784
HpyF10VI GCNNNNNNNGC 6 cut(s) 866, 962, 1975, 2708, 2737, 2824
HspAI GCGC 2 cut(s) 87, 1748
KpnI GGTACC 1 cut(s) 633
Ksp22I TGATCA 2 cut(s) 58, 1492
LguI GCTCTTC 2 cut(s) 963, 1957
LmnI GCTCC 5 cut(s) 1454, 1975, 2189, 2515, 3069
LweI GCATC 7 cut(s) 172, 1117, 1325, 2026, 2794, 2814, 3132
MaeI CTAG 9 cut(s) 756, 833, 1593, 1671, 1761, 1797, 1815, 2268, 3095
MaeIII GTNAC 7 cut(s) 644, 1566, 1624, 1656, 1925, 2319, 3041
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 6 cut(s) 421, 608, 947, 2695, 2765, 2831
MhlI GDGCHC 5 cut(s) 1770, 2194, 2500, 2542, 3066
MlsI TGGCCA 2 cut(s) 1104, 3009
MluI ACGCGT 1 cut(s) 983
MluNI TGGCCA 2 cut(s) 1104, 3009
MlyI GAGTC 5 cut(s) 188, 1664, 1716, 1750, 2582
MmeI TCCRAC 5 cut(s) 685, 1224, 1665, 2793, 2998
Mox20I TGGCCA 2 cut(s) 1104, 3009
MroXI GAANNNNTTC 2 cut(s) 564, 2911
MscI TGGCCA 2 cut(s) 1104, 3009
MslI CAYNNNNRTG 7 cut(s) 1125, 1218, 1220, 1404, 1500, 2892, 3015
Msp20I TGGCCA 2 cut(s) 1104, 3009
MspA1I CMGCKG 3 cut(s) 494, 802, 965
MspI CCGG 4 cut(s) 205, 1910, 2516, 2549
MspR9I CCNGG 6 cut(s) 1106, 2006, 2330, 2517, 2550, 2751
MunI CAATTG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 1978
MvaI CCWGG 4 cut(s) 1106, 2006, 2330, 2751
MvnI CGCG 1 cut(s) 985
MwoI GCNNNNNNNGC 6 cut(s) 866, 962, 1975, 2708, 2737, 2824
NciI CCSGG 2 cut(s) 2517, 2550
NcoI CCATGG 1 cut(s) 1320
NlaIV GGNNCC 9 cut(s) 377, 631, 907, 1559, 1731, 2220, 2540, 2541, 2697
NmuCI GTSAC 3 cut(s) 644, 1656, 2319
NspI RCATGY 2 cut(s) 219, 528
OliI CACNNNNGTG 1 cut(s) 1218
PaeI GCATGC 1 cut(s) 219
PagI TCATGA 3 cut(s) 51, 712, 1399
PaqCI CACCTGC 1 cut(s) 1321
PciI ACATGT 1 cut(s) 524
PciSI GCTCTTC 2 cut(s) 963, 1957
PctI GAATGC 1 cut(s) 1978
PdmI GAANNNNTTC 2 cut(s) 564, 2911
PflMI CCANNNNNTGG 1 cut(s) 2211
PfoI TCCNGGA 1 cut(s) 2515
PleI GAGTC 5 cut(s) 188, 1663, 1716, 1749, 2582
PpsI GAGTC 5 cut(s) 188, 1663, 1716, 1749, 2582
PpuMI RGGWCCY 1 cut(s) 1729
PscI ACATGT 1 cut(s) 524
Psp124BI GAGCTC 2 cut(s) 2194, 3066
Psp5II RGGWCCY 1 cut(s) 1729
Psp6I CCWGG 4 cut(s) 1104, 2004, 2328, 2749
PspEI GGTNACC 1 cut(s) 1925
PspGI CCWGG 4 cut(s) 1104, 2004, 2328, 2749
PspN4I GGNNCC 9 cut(s) 377, 631, 907, 1559, 1731, 2220, 2540, 2541, 2697
PspOMI GGGCCC 1 cut(s) 2538
PspPI GGNCC 7 cut(s) 202, 872, 1558, 1729, 2538, 2539, 2994
PspPPI RGGWCCY 1 cut(s) 1729
PsrI GAACNNNNNNTAC 6 cut(s) 368, 400, 838, 870, 973, 1005
PstI CTGCAG 3 cut(s) 432, 970, 2488
PstNI CAGNNNCTG 2 cut(s) 494, 875
PsuI RGATCY 6 cut(s) 421, 608, 947, 2695, 2765, 2831
PvuII CAGCTG 2 cut(s) 494, 965
RsaI GTAC 8 cut(s) 223, 585, 631, 768, 784, 982, 1701, 2422
RsaNI GTAC 8 cut(s) 222, 584, 630, 767, 783, 981, 1700, 2421
RseI CAYNNNNRTG 7 cut(s) 1125, 1218, 1220, 1404, 1500, 2892, 3015
SacI GAGCTC 2 cut(s) 2194, 3066
SapI GCTCTTC 2 cut(s) 963, 1957
Sau96I GGNCC 7 cut(s) 202, 872, 1558, 1729, 2538, 2539, 2994
ScaI AGTACT 1 cut(s) 2422
SchI GAGTC 5 cut(s) 188, 1664, 1716, 1750, 2582
ScrFI CCNGG 6 cut(s) 1106, 2006, 2330, 2517, 2550, 2751
SduI GDGCHC 5 cut(s) 1770, 2194, 2500, 2542, 3066
SfaNI GCATC 7 cut(s) 172, 1117, 1325, 2026, 2794, 2814, 3132
SfcI CTRYAG 6 cut(s) 428, 966, 1113, 2064, 2288, 2484
SinI GGWCC 3 cut(s) 1558, 1729, 2994
SmiMI CAYNNNNRTG 7 cut(s) 1125, 1218, 1220, 1404, 1500, 2892, 3015
SmlI CTYRAG 2 cut(s) 1724, 2562
SmoI CTYRAG 2 cut(s) 1724, 2562
SphI GCATGC 1 cut(s) 219
SsiI CCGC 7 cut(s) 135, 563, 802, 805, 867, 2314, 3039
SspI AATATT 3 cut(s) 443, 1577, 2665
SspMI CTAG 9 cut(s) 756, 833, 1593, 1671, 1761, 1797, 1815, 2268, 3095
SstI GAGCTC 2 cut(s) 2194, 3066
StyD4I CCNGG 6 cut(s) 1104, 2004, 2328, 2515, 2548, 2749
StyI CCWWGG 3 cut(s) 1320, 1561, 2341
TaaI ACNGT 9 cut(s) 845, 1060, 1072, 1093, 1160, 2184, 2292, 2595, 2784
TaqI TCGA 5 cut(s) 33, 1898, 2020, 2371, 2915
TaqII GACCGA 1 cut(s) 2982
TatI WGTACW 4 cut(s) 583, 766, 1699, 2420
TauI GCSGC 1 cut(s) 805
TscAI CASTG 7 cut(s) 337, 361, 1077, 1200, 1366, 2598, 2662
TseFI GTSAC 3 cut(s) 644, 1656, 2319
Tsp45I GTSAC 3 cut(s) 644, 1656, 2319
TspGWI ACGGA 3 cut(s) 388, 1047, 1794
TspRI CASTG 7 cut(s) 337, 361, 1077, 1200, 1366, 2598, 2662
Van91I CCANNNNNTGG 1 cut(s) 2211
VpaK11BI GGWCC 3 cut(s) 1558, 1729, 2994
XapI RAATTY 5 cut(s) 18, 994, 1480, 1936, 2149
XbaI TCTAGA 1 cut(s) 2267
XceI RCATGY 2 cut(s) 219, 528
XmiI GTMKAC 1 cut(s) 2067
XmnI GAANNNNTTC 2 cut(s) 564, 2911
XspI CTAG 9 cut(s) 756, 833, 1593, 1671, 1761, 1797, 1815, 2268, 3095
ZrmI AGTACT 1 cut(s) 2422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.