Rmu_sc0006126.1_g000009

RING/Ubox like zinc-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006126.1
OG0001311
Physical Location & Seq
Forward (+)
24268 .. 39978
15711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006126.1_g000009.1.cds

Sequence Viewer

Length: 4533 bp
atgaagaacttaggtgttgggagttttgtcaaattcagactttgggcaggcggcggcgccccactgtgttggggtggcgaggtgattgacatctcagcgatagctggcgactctcagcgtcgtgcctcgcaatcctatcttttggctcaccctttagcagtgaaactagctgctctgaactatctgaaacgcttttttaagcatgtttggattttcgaggtgagtaaatctcacgatattcgttatgagcctagttaccatattgtcttggagttatgggactgtgactatagtggtattagtggcattcctgagtggatgatcatgtgtgtgtaccatagtggtgacgattgtgctatgtgtgaggataagaaaatgattcattgttttcaccttgatgtcatgttgatgacaaggcttccgattcgtcctcttctcgatccccaactgaaaatcatgagtgatcagggagaaaagacttgtcctctttgcgctgaggaaatggatttgacagatcagcaattgaaaccttgcaaatgcggttatgagatatgtgtttggtgttggcaccacataatgggcatggctgagaaggatgactctgagggccggtgtcctgcatgccgtaccccttatgataaggaaaagattgtaggggctgcgaagtgtgagagattggtggctgaaatccatactgagagaaagaagtctcagaagacaaaagttaagccaaccactgaaggaagaaagcagcttagcagtgtgcgagtgattcaacggaaccttgtttacatagttgggttgcctcttaatctggcagatgaagatctactgcagcgtaaagaatattttgctcaatatgggaaggttttaaaggtttctatgtctcggacagcagctggtgtcattcaacaatttccaaacaatacatgtagtgtatatattacttactcaaaagaggaggaagcggttcgctgtattcaaaatgtacatgggtttctattggatggaagatctttgagggcttgctttggtaccacaaagtattgtcacgcatggctaagaaatgtgccttgcaccaatcccgattgtttgtatctgcacgaggttggatgtcatgaggatagtttcactaaagatgaaataatttctgcatacactaggagtagagtacaacaaattactggtactctaaaccctatgcagcggcggtcagggagtgtgttgcctccaccactagatgattactgtaatagcagttctgcttctaccgcagggcctgttgttaaaaatggttcaagtaatactggaaccctcattaaaggttctcctccaaatggaagctctggtagatctattgctcttccagctgcagcctcatggggtacgcgtggttcaaattctcaaccaccagctatgcaaataatatattcaaacggacatacaaaacagaaacctgatacagtcagttgcacagtgccattttctttggctactgtttctactggccaggcttctatagtgcatagcgatgcaggagagaggctaactttgaatgaagacagtcagactatgcaagctaaaggtaaaccggaatcactgaaaattgtgaaacaacacattagtgtggatagtcaaattgccctgtcggacaatcctgctgcacccgatgaagcttctgcttctgttaatgttagcagtcagttatcttgtccacctgcatccatggacaacaatagaggcagtagtatgcagccaacttgcactgccaccaaccataatcggcagccttttagttcctgtcatgaaagtgaaagtattgtttctaatgaagaagccacccaaagcttatgctccgatatatctttaatgagcattgatagaaattcaatgcttgatcattctggtgtagtcagacctaataattcagcttcagataattcatatattaaatcacctcgggaccaagggttacaacaatattgtgctgaacagcctagagaatctcctataacaactgagagagcagtaacaagagaacaatccaactggttatcagagtcacaaccattacctagtatatcttctgaggtggaggaggatgtactatcttttgataatcaaagactcaaggacccagaagtgagtcgtgcgccgtatctgtctagtgtgcccaatgcagtccatgttccaaatcactctaggtctccgttgctacctagtgagggttatggtgcagtttattcaagtgctgatcgcctttttgtagataataaaattagggacagctcacttctatcttcgaccaacattccggcacaatctaatggttaccatgagaattttgtaagcagctcttctggtttagagaagcctttggagcattcatttcttaaccgaaatgaaagcctggggaagcatggtcgaagattcttgggtgatgcagctaatcctgatttcagtaatgctgtagacaagggagagagcagcataatctcaaatatattatcaatggactttgacacttgggatgacccaataacatcgcctcaaaatttctccaagtttttgggtgaatctgatagacagtctggagctcagaaacattccagttcatggaaggtgccaaataataatcagtcaagattctcttttgcaagacaggaggattctagaaatcaggcatttgatctacagtcatctcagaatgtcattgggcggttgtcacagaaccaggcacagaaccaaggattccatcatggctattctgaaaatcgagatttatgtttggataattttggaagtggaaatggttttgcttcaagtacttttgaagattctgaaaatcatgctaacaatcttttagccttctcttctaacaagctttctgcagtttcaagggctcaaatctctgctcctccgggattctctgtgccaagcagggccccacctccgggctttacttctcaagagagaatagagcatgattttgactcactgtctgggaatcttttgcatgataactcctctctgttgagaaatgcctatcaacctcagcccactgggaatattggtagctctgtggatattgagtttatggatcctgctatattggcagttggtaaagggagactgcaaggtgggcttaacaaccctggtgtagatatgagatccaacttcccttcacagttaagtgcctttgaaaacgatgcaagacttcagctcttgatgcaaagatccttctcccaacaacaaaaccttaggtatcctgattttggggatggctattctcatgtcaatgataactatggaatgtcttcgagacttttggatcaatctcaggcaagcaatatgtcgccttttgctcaactctctctacaacaatccagaaataatcggtccatgtcaaatggccattgggatgggtggaatgaggttcagggcggtaacactatgggtatggcagagctcctgagaaatgagagagtaaatgagagactaggatacaataagttctattctggttatgaagaatcaaagtttcggatgcccagttctggcgatctgtataacagaacctttgggatgatgggactgactcgtaactggtcttgctcttggcagcctaatgtagggtcagactcctgtaactattggggtctaaaatcctgcagtacttttgaagattctgaaaatcatgccaacaatcttttagccttctcttctaacaagctttctgcagtttcaagggctcaaatctctgctcctccgggattctctgtgccaagcagggccccacctccgggctttacttctcaagagagaatagagcatgattttgactctgggaatcttttgcatgataactcctctctgttgagaaatgcctatcaacctcagcccactgggaatattggtagctctgtggatattgagtttatggatcctgctatattggcagttggtaaagggagactgcaaggtgggcttaacaaccctggtgtagatatgagatccaacttcccttcacagttaagtgcctttgaaaacgatgcaagacttcagctcttgatgcaaagatccttctcccaacaacaaaaccttaggtatcctgattttggggatggctattctcatgtcaatgataactatggaatgtcttcgagacttttggatcaatctcaggcaagcaatatgtcgccttttgctcaactctctctccaacaatccagaaataatcggtccatgtcaaatggccattgggatgggtggaatgaggttcagggcggtaacactatgggtatggcagagctcctgagaaatgagagagtaaatgagagactaggatacaataagttctattctggttatgaagaatcaaagtttcggatgcccagttctggcgatctgtataacagaacctttgggatgatgggactgactcgtaactggtcttgctcttggcagcctaatgtagggtcagactcctgtaactattggggtctaaaatcctgcaggtgctggtgtgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000956 GO:0002682 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010564 GO:0010605 GO:0010629 GO:0010948 GO:0016070 GO:0016071 GO:0016567 GO:0016740 GO:0019222 GO:0019439 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0023052 GO:0030163 GO:0030330 GO:0031570 GO:0031571 GO:0032446 GO:0033554 GO:0034641 GO:0034655 GO:0035556 GO:0036211 GO:0042770 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045595 GO:0045637 GO:0045652 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051726 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071156 GO:0071158 GO:0071704 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0090068 GO:0090304 GO:0140096 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902806 GO:1902807 GO:1903047 GO:1903706 GO:2000026 GO:2000045 GO:2000134
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RRM_1 zf-RING_4

Protein Analysis

1510

Amino Acids

167.31

Weight (kDa)

6.12

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1726, 4506
Acc36I ACCTGC 2 cut(s) 1726, 4506
Acc65I GGTACC 1 cut(s) 1034
AccB1I GGYRCC 4 cut(s) 56, 567, 1034, 2623
AccB7I CCANNNNNTGG 2 cut(s) 577, 2616
AccI GTMKAC 1 cut(s) 2472
AccII CGCG 1 cut(s) 1390
AcoI YGGCCR 3 cut(s) 1507, 3412, 4255
AcsI RAATTY 5 cut(s) 32, 1399, 1885, 2341, 2554
AcuI CTGAAG 4 cut(s) 759, 1917, 3203, 4046
AcyI GRCGYC 1 cut(s) 57
AflIII ACRYGT 2 cut(s) 929, 1388
AhdI GACNNNNNGTC 1 cut(s) 2998
AjnI CCWGG 5 cut(s) 1509, 2409, 2733, 3154, 3997
AleI CACNNNNGTG 1 cut(s) 1623
AloI GAACNNNNNNTCC 4 cut(s) 3538, 3570, 4381, 4413
Alw21I GWGCWC 3 cut(s) 2599, 3471, 4314
Alw26I GTCTC 9 cut(s) 714, 891, 2211, 3124, 3316, 3490, 3967, 4159, 4333
AlwNI CAGNNNCTG 3 cut(s) 899, 1280, 4521
Ama87I CYCGRG 1 cut(s) 1959
AoxI GGCC 7 cut(s) 607, 1277, 1507, 2943, 3412, 3792, 4255
ApaI GGGCCC 2 cut(s) 2947, 3796
ApoI RAATTY 5 cut(s) 32, 1399, 1885, 2341, 2554
Asp700I GAANNNNTTC 3 cut(s) 969, 3316, 4159
Asp718I GGTACC 1 cut(s) 1034
AspLEI GCGC 3 cut(s) 59, 494, 2155
AsuC2I CCSGG 4 cut(s) 2922, 2955, 3771, 3804
AsuHPI GGTGA 8 cut(s) 94, 140, 232, 356, 383, 1947, 2450, 2585
AvaI CYCGRG 1 cut(s) 1959
AvaII GGWCC 4 cut(s) 1963, 2134, 3399, 4242
AxyI CCTNAGG 2 cut(s) 3260, 4103
BaeGI GKGCMC 3 cut(s) 2175, 2947, 3796
BalI TGGCCA 3 cut(s) 1509, 3414, 4257
BamHI GGATCC 2 cut(s) 3100, 3943
BanI GGYRCC 4 cut(s) 56, 567, 1034, 2623
BanII GRGCYC 7 cut(s) 2599, 2905, 2947, 3471, 3754, 3796, 4314
BauI CACGAG 1 cut(s) 1103
BbsI GAAGAC 4 cut(s) 722, 1566, 3309, 4152
Bbv12I GWGCWC 3 cut(s) 2599, 3471, 4314
BbvCI CCTCAGC 3 cut(s) 495, 3054, 3897
BccI CCATC 8 cut(s) 1001, 2763, 3275, 3416, 3583, 4118, 4259, 4426
BceAI ACGGC 2 cut(s) 609, 2140
BciT130I CCWGG 5 cut(s) 1511, 2411, 2735, 3156, 3999
BciVI GTATCC 4 cut(s) 3276, 3497, 4119, 4340
BclI TGATCA 3 cut(s) 321, 463, 1897
BcnI CCSGG 4 cut(s) 2922, 2955, 3771, 3804
BcoDI GTCTC 9 cut(s) 714, 891, 2211, 3124, 3316, 3490, 3967, 4159, 4333
BfoI RGCGCY 1 cut(s) 60
BfuAI ACCTGC 2 cut(s) 1726, 4506
BfuI GTATCC 4 cut(s) 3276, 3497, 4119, 4340
BglII AGATCT 3 cut(s) 826, 1013, 1352
BlpI GCTNAGC 1 cut(s) 755
BmcAI AGTACT 2 cut(s) 2827, 3676
Bme1390I CCNGG 9 cut(s) 1511, 2411, 2735, 2922, 2955, 3156, 3771, 3804, 3999
Bme18I GGWCC 4 cut(s) 1963, 2134, 3399, 4242
BmeRI GACNNNNNGTC 1 cut(s) 2998
BmeT110I CYCGRG 1 cut(s) 1959
BmrFI CCNGG 9 cut(s) 1511, 2411, 2735, 2922, 2955, 3156, 3771, 3804, 3999
BmrI ACTGGG 4 cut(s) 3072, 3546, 3915, 4389
BmsI GCATC 9 cut(s) 1522, 1730, 2431, 3199, 3219, 3537, 4042, 4062, 4380
BmuI ACTGGG 4 cut(s) 3072, 3546, 3915, 4389
BpiI GAAGAC 4 cut(s) 722, 1566, 3309, 4152
BplI GAGNNNNNCTC 2 cut(s) 214, 246
BpmI CTGGAG 1 cut(s) 2613
Bpu10I CCTNAGC 3 cut(s) 495, 3054, 3897
Bpu1102I GCTNAGC 1 cut(s) 755
BpuEI CTTGAG 3 cut(s) 2114, 2952, 3801
BpuMI CCSGG 4 cut(s) 2922, 2955, 3771, 3804
BsaBI GATNNNNATC 2 cut(s) 89, 825
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 2211
BsaJI CCNNGG 7 cut(s) 1725, 1958, 1966, 2410, 2746, 3154, 3997
BsaWI WCCGGW 1 cut(s) 1591
BsaXI ACNNNNNCTCC 2 cut(s) 4203, 4233
Bse118I RCCGGY 1 cut(s) 609
Bse21I CCTNAGG 2 cut(s) 3260, 4103
Bse8I GATNNNNATC 2 cut(s) 89, 825
BseBI CCWGG 5 cut(s) 1511, 2411, 2735, 3156, 3999
BseDI CCNNGG 7 cut(s) 1725, 1958, 1966, 2410, 2746, 3154, 3997
BseJI GATNNNNATC 2 cut(s) 89, 825
BseRI GAGGAG 7 cut(s) 974, 1320, 2111, 2907, 3016, 3756, 3859
BseSI GKGCMC 3 cut(s) 2175, 2947, 3796
BsgI GTGCAG 3 cut(s) 1085, 1647, 2256
Bsh1236I CGCG 1 cut(s) 1390
BshFI GGCC 7 cut(s) 609, 1279, 1509, 2945, 3414, 3794, 4257
BshNI GGYRCC 4 cut(s) 56, 567, 1034, 2623
BsiHKAI GWGCWC 3 cut(s) 2599, 3471, 4314
BsiHKCI CYCGRG 1 cut(s) 1959
BsiSI CCGG 7 cut(s) 610, 1592, 2315, 2921, 2954, 3770, 3803
BslFI GGGAC 5 cut(s) 293, 1976, 2297, 3606, 4449
BsmAI GTCTC 9 cut(s) 714, 891, 2211, 3124, 3316, 3490, 3967, 4159, 4333
BsmFI GGGAC 5 cut(s) 293, 1976, 2297, 3606, 4449
BsmI GAATGC 2 cut(s) 306, 2383
BsnI GGCC 7 cut(s) 609, 1279, 1509, 2945, 3414, 3794, 4257
Bso31I GGTCTC 1 cut(s) 2211
BsoBI CYCGRG 1 cut(s) 1959
Bsp120I GGGCCC 2 cut(s) 2943, 3792
Bsp1286I GDGCHC 8 cut(s) 2175, 2599, 2905, 2947, 3471, 3754, 3796, 4314
Bsp1407I TGTACA 1 cut(s) 988
Bsp1720I GCTNAGC 1 cut(s) 755
Bsp19I CCATGG 1 cut(s) 1725
BspANI GGCC 7 cut(s) 609, 1279, 1509, 2945, 3414, 3794, 4257
BspFNI CGCG 1 cut(s) 1390
BspHI TCATGA 3 cut(s) 456, 1117, 1804
BspMAI CTGCAG 6 cut(s) 837, 1375, 2893, 3674, 3742, 4517
BspMI ACCTGC 2 cut(s) 1726, 4506
BspQI GCTCTTC 2 cut(s) 1368, 2362
BspT107I GGYRCC 4 cut(s) 56, 567, 1034, 2623
BspTNI GGTCTC 1 cut(s) 2211
BsrFI RCCGGY 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 988
BssAI RCCGGY 1 cut(s) 609
BssECI CCNNGG 7 cut(s) 1725, 1958, 1966, 2410, 2746, 3154, 3997
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 1103
BssT1I CCWWGG 3 cut(s) 1725, 1966, 2746
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 5 cut(s) 1511, 2411, 2735, 3156, 3999
Bst6I CTCTTC 5 cut(s) 438, 1368, 2362, 2878, 3727
BstACI GRCGYC 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 988
BstC8I GCNNGC 7 cut(s) 49, 106, 622, 1027, 1578, 3346, 4189
BstDSI CCRYGG 1 cut(s) 1725
BstEII GGTNACC 1 cut(s) 2330
BstENI CCTNNNNNAGG 2 cut(s) 3630, 4473
BstFNI CGCG 1 cut(s) 1390
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 3 cut(s) 59, 494, 2155
BstMAI GTCTC 9 cut(s) 714, 891, 2211, 3124, 3316, 3490, 3967, 4159, 4333
BstMWI GCNNNNNNNGC 9 cut(s) 1271, 1367, 2380, 3113, 3142, 3229, 3956, 3985, 4072
BstNI CCWGG 5 cut(s) 1511, 2411, 2735, 3156, 3999
BstNSI RCATGY 3 cut(s) 206, 624, 933
BstPI GGTNACC 1 cut(s) 2330
BstSCI CCNGG 9 cut(s) 1509, 2409, 2733, 2920, 2953, 3154, 3769, 3802, 3997
BstSLI GKGCMC 3 cut(s) 2175, 2947, 3796
BstUI CGCG 1 cut(s) 1390
BstV2I GAAGAC 4 cut(s) 722, 1566, 3309, 4152
BstX2I RGATCY 9 cut(s) 826, 1013, 1352, 3100, 3170, 3236, 3943, 4013, 4079
BstXI CCANNNNNNTGG 4 cut(s) 69, 2569, 3422, 4265
BstYI RGATCY 9 cut(s) 826, 1013, 1352, 3100, 3170, 3236, 3943, 4013, 4079
Bsu36I CCTNAGG 2 cut(s) 3260, 4103
BsuI GTATCC 4 cut(s) 3276, 3497, 4119, 4340
BsuRI GGCC 7 cut(s) 609, 1279, 1509, 2945, 3414, 3794, 4257
BtgI CCRYGG 1 cut(s) 1725
BtgZI GCGATG 2 cut(s) 1545, 2529
BtsI GCAGTG 3 cut(s) 165, 766, 1764
BveI ACCTGC 2 cut(s) 1726, 4506
Cac8I GCNNGC 7 cut(s) 49, 106, 622, 1027, 1578, 3346, 4189
CaiI CAGNNNCTG 3 cut(s) 899, 1280, 4521
CciI TCATGA 3 cut(s) 456, 1117, 1804
CfoI GCGC 3 cut(s) 59, 494, 2155
Cfr10I RCCGGY 1 cut(s) 609
CseI GACGC 1 cut(s) 107
DinI GGCGCC 1 cut(s) 58
DraI TTTAAA 1 cut(s) 873
DriI GACNNNNNGTC 1 cut(s) 2998
EaeI YGGCCR 3 cut(s) 1507, 3412, 4255
Eam1104I CTCTTC 5 cut(s) 438, 1368, 2362, 2878, 3727
Eam1105I GACNNNNNGTC 1 cut(s) 2998
EarI CTCTTC 5 cut(s) 438, 1368, 2362, 2878, 3727
Ecl136II GAGCTC 3 cut(s) 2597, 3469, 4312
Eco130I CCWWGG 3 cut(s) 1725, 1966, 2746
Eco24I GRGCYC 7 cut(s) 2599, 2905, 2947, 3471, 3754, 3796, 4314
Eco31I GGTCTC 1 cut(s) 2211
Eco47I GGWCC 4 cut(s) 1963, 2134, 3399, 4242
Eco53kI GAGCTC 3 cut(s) 2597, 3469, 4312
Eco57I CTGAAG 4 cut(s) 759, 1917, 3203, 4046
Eco81I CCTNAGG 2 cut(s) 3260, 4103
Eco88I CYCGRG 1 cut(s) 1959
Eco91I GGTNACC 1 cut(s) 2330
EcoICRI GAGCTC 3 cut(s) 2597, 3469, 4312
EcoNI CCTNNNNNAGG 2 cut(s) 3630, 4473
EcoO109I RGGNCCY 6 cut(s) 1277, 2134, 2943, 2944, 3792, 3793
EcoO65I GGTNACC 1 cut(s) 2330
EcoRII CCWGG 5 cut(s) 1509, 2409, 2733, 3154, 3997
EcoT14I CCWWGG 3 cut(s) 1725, 1966, 2746
EcoT38I GRGCYC 7 cut(s) 2599, 2905, 2947, 3471, 3754, 3796, 4314
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 3 cut(s) 1725, 1966, 2746
FalI AAGNNNNNCTT 8 cut(s) 2341, 2373, 2635, 2667, 3129, 3161, 3972, 4004
FaqI GGGAC 5 cut(s) 293, 1976, 2297, 3606, 4449
FbaI TGATCA 3 cut(s) 321, 463, 1897
FblI GTMKAC 1 cut(s) 2472
FriOI GRGCYC 7 cut(s) 2599, 2905, 2947, 3471, 3754, 3796, 4314
GlaI GCGC 3 cut(s) 58, 493, 2154
GsuI CTGGAG 1 cut(s) 2613
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 7 cut(s) 609, 1279, 1509, 2945, 3414, 3794, 4257
HapII CCGG 7 cut(s) 610, 1592, 2315, 2921, 2954, 3770, 3803
HgaI GACGC 1 cut(s) 107
HhaI GCGC 3 cut(s) 59, 494, 2155
Hin1I GRCGYC 1 cut(s) 57
Hin6I GCGC 3 cut(s) 57, 492, 2153
HinP1I GCGC 3 cut(s) 57, 492, 2153
HindIII AAGCTT 4 cut(s) 1674, 1846, 2882, 3731
HpaII CCGG 7 cut(s) 610, 1592, 2315, 2921, 2954, 3770, 3803
HphI GGTGA 8 cut(s) 94, 140, 232, 356, 383, 1947, 2450, 2585
Hpy166II GTNNAC 5 cut(s) 334, 790, 1589, 1715, 2473
Hpy8I GTNNAC 5 cut(s) 334, 790, 1589, 1715, 2473
Hpy99I CGWCG 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 9 cut(s) 1271, 1367, 2380, 3113, 3142, 3229, 3956, 3985, 4072
Hsp92I GRCGYC 1 cut(s) 57
HspAI GCGC 3 cut(s) 57, 492, 2153
KasI GGCGCC 1 cut(s) 56
KpnI GGTACC 1 cut(s) 1038
Ksp22I TGATCA 3 cut(s) 321, 463, 1897
LguI GCTCTTC 2 cut(s) 1368, 2362
LmnI GCTCC 7 cut(s) 1859, 2380, 2594, 2920, 3474, 3769, 4317
LweI GCATC 9 cut(s) 1522, 1730, 2431, 3199, 3219, 3537, 4042, 4062, 4380
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 9 cut(s) 826, 1013, 1352, 3100, 3170, 3236, 3943, 4013, 4079
MhlI GDGCHC 8 cut(s) 2175, 2599, 2905, 2947, 3471, 3754, 3796, 4314
MlsI TGGCCA 3 cut(s) 1509, 3414, 4257
MluI ACGCGT 1 cut(s) 1388
MluNI TGGCCA 3 cut(s) 1509, 3414, 4257
Mly113I GGCGCC 1 cut(s) 57
MmeI TCCRAC 6 cut(s) 1090, 1629, 2070, 3198, 4041, 4246
Mox20I TGGCCA 3 cut(s) 1509, 3414, 4257
MroXI GAANNNNTTC 3 cut(s) 969, 3316, 4159
MscI TGGCCA 3 cut(s) 1509, 3414, 4257
Msp20I TGGCCA 3 cut(s) 1509, 3414, 4257
MspA1I CMGCKG 3 cut(s) 899, 1207, 1370
MspI CCGG 7 cut(s) 610, 1592, 2315, 2921, 2954, 3770, 3803
MspR9I CCNGG 9 cut(s) 1511, 2411, 2735, 2922, 2955, 3156, 3771, 3804, 3999
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 2 cut(s) 306, 2383
MvaI CCWGG 5 cut(s) 1511, 2411, 2735, 3156, 3999
MvnI CGCG 1 cut(s) 1390
MwoI GCNNNNNNNGC 9 cut(s) 1271, 1367, 2380, 3113, 3142, 3229, 3956, 3985, 4072
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 4 cut(s) 2922, 2955, 3771, 3804
NcoI CCATGG 1 cut(s) 1725
NmuCI GTSAC 5 cut(s) 284, 344, 1049, 2061, 2724
NspI RCATGY 3 cut(s) 206, 624, 933
OliI CACNNNNGTG 1 cut(s) 1623
PaeI GCATGC 1 cut(s) 624
PagI TCATGA 3 cut(s) 456, 1117, 1804
PaqCI CACCTGC 2 cut(s) 1726, 4506
PciI ACATGT 1 cut(s) 929
PciSI GCTCTTC 2 cut(s) 1368, 2362
PctI GAATGC 2 cut(s) 306, 2383
PdmI GAANNNNTTC 3 cut(s) 969, 3316, 4159
PflMI CCANNNNNTGG 2 cut(s) 577, 2616
PfoI TCCNGGA 2 cut(s) 2920, 3769
PluTI GGCGCC 1 cut(s) 60
PpuMI RGGWCCY 1 cut(s) 2134
PscI ACATGT 1 cut(s) 929
Psp124BI GAGCTC 3 cut(s) 2599, 3471, 4314
Psp5II RGGWCCY 1 cut(s) 2134
Psp6I CCWGG 5 cut(s) 1509, 2409, 2733, 3154, 3997
PspEI GGTNACC 1 cut(s) 2330
PspGI CCWGG 5 cut(s) 1509, 2409, 2733, 3154, 3997
PspOMI GGGCCC 2 cut(s) 2943, 3792
PspPPI RGGWCCY 1 cut(s) 2134
PsrI GAACNNNNNNTAC 6 cut(s) 773, 805, 1243, 1275, 1378, 1410
PstI CTGCAG 6 cut(s) 837, 1375, 2893, 3674, 3742, 4517
PstNI CAGNNNCTG 3 cut(s) 899, 1280, 4521
PsuI RGATCY 9 cut(s) 826, 1013, 1352, 3100, 3170, 3236, 3943, 4013, 4079
PvuII CAGCTG 2 cut(s) 899, 1370
SacI GAGCTC 3 cut(s) 2599, 3471, 4314
SapI GCTCTTC 2 cut(s) 1368, 2362
SbfI CCTGCAGG 1 cut(s) 4517
ScaI AGTACT 2 cut(s) 2827, 3676
ScrFI CCNGG 9 cut(s) 1511, 2411, 2735, 2922, 2955, 3156, 3771, 3804, 3999
SdaI CCTGCAGG 1 cut(s) 4517
SduI GDGCHC 8 cut(s) 2175, 2599, 2905, 2947, 3471, 3754, 3796, 4314
SfaNI GCATC 9 cut(s) 1522, 1730, 2431, 3199, 3219, 3537, 4042, 4062, 4380
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 4 cut(s) 1963, 2134, 3399, 4242
SmlI CTYRAG 3 cut(s) 2129, 2967, 3816
SmoI CTYRAG 3 cut(s) 2129, 2967, 3816
SphI GCATGC 1 cut(s) 624
Sse8387I CCTGCAGG 1 cut(s) 4517
SspDI GGCGCC 1 cut(s) 56
SspI AATATT 4 cut(s) 848, 1982, 3070, 3913
SstI GAGCTC 3 cut(s) 2599, 3471, 4314
StyD4I CCNGG 9 cut(s) 1509, 2409, 2733, 2920, 2953, 3154, 3769, 3802, 3997
StyI CCWWGG 3 cut(s) 1725, 1966, 2746
TaqI TCGA 7 cut(s) 216, 438, 2303, 2425, 2776, 3320, 4163
TaqII GACCGA 2 cut(s) 3387, 4230
TatI WGTACW 5 cut(s) 988, 1171, 2104, 2825, 3674
TauI GCSGC 3 cut(s) 54, 57, 1210
TseFI GTSAC 5 cut(s) 284, 344, 1049, 2061, 2724
Tsp45I GTSAC 5 cut(s) 284, 344, 1049, 2061, 2724
TspGWI ACGGA 3 cut(s) 793, 1452, 2199
Van91I CCANNNNNTGG 2 cut(s) 577, 2616
VpaK11BI GGWCC 4 cut(s) 1963, 2134, 3399, 4242
XagI CCTNNNNNAGG 2 cut(s) 3630, 4473
XapI RAATTY 5 cut(s) 32, 1399, 1885, 2341, 2554
XbaI TCTAGA 1 cut(s) 2672
XceI RCATGY 3 cut(s) 206, 624, 933
XmiI GTMKAC 1 cut(s) 2472
XmnI GAANNNNTTC 3 cut(s) 969, 3316, 4159
ZrmI AGTACT 2 cut(s) 2827, 3676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.