Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Reverse (-)

24546329 .. 24549339

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGAGGAAGAGAACGAAGTAGTGAAGACGTTTGCAGAGCTTGGTGTGCGTGAGGAGCTTGTTAAAGCTTGCGAGAGATTGGGATGGAAGAACCCTTCCAAAATTCAAGCCGAAGCCCTTCCTTTTGCTCTTGAAGGGAAAGATGTAATTGGACTTGCGCAAACCGGTTCTGGTAAAACCGGAGCTTTTGCAATTCCTATATTGCAAGCACTACTTGAGTATGTTTATGATTCTGAGCCTAAGAAAGGACGTAGACCGGATCCTGCTTTCTTCGCTTGTGTTTTATCTCCAACTCGAGAACTTGCAATCCAGATTGCTGAACAGTTTGAAGCTCTTGGTGCTGATATAAGTCTTAGGTGTGCTGTGCTTGTTGGAGGTATAGACAGGATGCAACAAACTATTGCTCTTGGGAAACGGCCTCATGTTATTGTTGCAACACCTGGTCGTCTTTGGGATCATATGTCTGATACAAAAGGCTTTTCTCTGAAATCATTGAAATATCTGGTTCTTGATGAAGCAGATAGACTGTTGAATGAAGATTTTGAGAAATCTCTTAACCAGATTTTGGAAGAGATCCCTCTTGAGCGGAAAACATTTCTTTTTTCAGCGACTATGACTAAAAAGGTTCGAAAACTTCAAAGGGCATGTTTGAGGAATCCTGTGAAGATTGAAGCTGCCTCCAAATATTCCACTGTCGATACTCTTAAGCAGCAGTATCGGTTTGTTGCCGCTAAATACAAGGATTGCTATCTGGTATACATTCTGAGTGAAATGCCTGAATCAACATCTATGATTTTCACCCGAACATGTGATGGTACTCGCTTTCTGGCTTTGGTGCTTCGGAGCCTTGGTTTTAGAGCTATTCCTATCAGTGGTCAAATGACTCAGTCAAAGAGACTGGGAGCTTTAAATAAGTTCAAAGCAGGGGAATGTAATATCTTGGTTTGTACCGATGTGGCTAGTAGAGGGCTCGATATCCCATCAGTTGATGTGGTTATCAATTATGATATTCCCACAAATTCAAAGGATTACATCCATAGAGTAGGAAGAACCGCTCGTGCTGGACGTTCTGGTGTTGGGATATCACTTGTAAACCAGTATGAGCTCGAATGGTATATACAAATAGAAAAACTCATTGGCAAGAAACTACCTGAATATCCCGCTGAGGAAGATGAAGTCTTGTCATTGTTGGAGAGAGTTGCAGAAGCGAAAAAGCTATCTGCAATGAATATGAAAGAATCAGGAGGTAGGAAGAGAAGGGGAGAAGATGATGAAGAAAGTGAGAGGTTCTTGGGAGGTAACAAGGACAGAGGCAACAAGGAAAGAGGTGGTAACAAAGACAAGAAGTCTTCTAAGAAGTTCAAACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

456

Amino Acids

51.15

Weight (kDa)

9.07

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	34 - 211	8.6e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	250 - 355	2.2e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccBSI	CCGCTC	2 cut(s)	586, 1055
AccI	GTMKAC	2 cut(s)	253, 756
AciI	CCGC	4 cut(s)	586, 729, 1053, 1161
AclWI	GGATC	4 cut(s)	254, 267, 462, 568
AcsI	RAATTY	2 cut(s)	102, 1018
AfaI	GTAC	2 cut(s)	817, 949
AfiI	CCNNNNNNNGG	3 cut(s)	245, 565, 872
AflII	CTTAAG	1 cut(s)	704
AflIII	ACRYGT	1 cut(s)	806
AgeI	ACCGGT	1 cut(s)	164
AhdI	GACNNNNNGTC	1 cut(s)	1345
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	1119, 1151
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
Alw21I	GWGCWC	1 cut(s)	1107
Alw26I	GTCTC	1 cut(s)	889
AlwI	GGATC	4 cut(s)	254, 267, 462, 568
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	674, 709
ApoI	RAATTY	2 cut(s)	102, 1018
AsiGI	ACCGGT	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	790
AsuII	TTCGAA	1 cut(s)	628
AvaI	CYCGRG	1 cut(s)	294
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	972, 1107
BauI	CACGAG	1 cut(s)	1056
BbsI	GAAGAC	2 cut(s)	32, 1341
Bbv12I	GWGCWC	1 cut(s)	1107
BbvCI	CCTCAGC	1 cut(s)	1164
BbvI	GCAGC	2 cut(s)	661, 721
BccI	CCATC	3 cut(s)	78, 806, 988
BceAI	ACGGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	889
BfaI	CTAG	1 cut(s)	960
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	3 cut(s)	675, 710, 729
BlsI	GCNGC	3 cut(s)	676, 711, 730
Bme1390I	CCNGG	1 cut(s)	441
BmeRI	GACNNNNNGTC	1 cut(s)	1345
BmeT110I	CYCGRG	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	261, 845
BmrFI	CCNGG	1 cut(s)	441
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	2 cut(s)	32, 1341
Bpu10I	CCTNAGC	1 cut(s)	1164
Bpu14I	TTCGAA	1 cut(s)	628
BpuEI	CTTGAG	2 cut(s)	236, 602
BsaBI	GATNNNNATC	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	847
BsaWI	WCCGGW	3 cut(s)	164, 179, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	835, 865
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 565, 872
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	903, 1096
Bse3DI	GCAATG	1 cut(s)	1230
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	847
BseGI	GGATG	3 cut(s)	89, 393, 1032
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	245, 565, 872
BseMI	GCAATG	1 cut(s)	1230
BseMII	CTCAG	4 cut(s)	225, 755, 899, 1155
BseNI	ACTGG	2 cut(s)	903, 1096
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	661, 721
BshFI	GGCC	1 cut(s)	418
BshTI	ACCGGT	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	1107
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	3 cut(s)	165, 180, 257
BslI	CCNNNNNNNGG	3 cut(s)	245, 565, 872
BsmAI	GTCTC	1 cut(s)	889
BsnI	GGCC	1 cut(s)	418
BsoBI	CYCGRG	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	628
Bsp1286I	GDGCHC	2 cut(s)	972, 1107
Bsp143I	GATC	3 cut(s)	259, 454, 573
BspACI	CCGC	4 cut(s)	586, 729, 1053, 1161
BspANI	GGCC	1 cut(s)	418
BspCNI	CTCAG	4 cut(s)	226, 756, 898, 1156
BspLI	GGNNCC	2 cut(s)	261, 845
BspPI	GGATC	4 cut(s)	254, 267, 462, 568
BspT104I	TTCGAA	1 cut(s)	628
BspTI	CTTAAG	1 cut(s)	704
BsrBI	CCGCTC	2 cut(s)	586, 1055
BsrDI	GCAATG	1 cut(s)	1230
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	903, 1096
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	847
BssMI	GATC	3 cut(s)	259, 454, 573
BssNAI	GTATAC	1 cut(s)	757
BssSI	CACGAG	1 cut(s)	1056
BssT1I	CCWWGG	1 cut(s)	847
Bst1107I	GTATAC	1 cut(s)	757
Bst2BI	CACGAG	1 cut(s)	1056
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	3 cut(s)	324, 528, 694
Bst6I	CTCTTC	3 cut(s)	3, 564, 1247
BstAFI	CTTAAG	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	70, 207
BstDEI	CTNAG	7 cut(s)	234, 240, 353, 764, 885, 1164, 1353
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	89, 393, 1032
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	262, 457, 576
BstMAI	GTCTC	1 cut(s)	889
BstMBI	GATC	3 cut(s)	259, 454, 573
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 55, 272, 338
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	2 cut(s)	648, 810
BstSCI	CCNGG	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	661, 721
BstV2I	GAAGAC	2 cut(s)	32, 1341
BstX2I	RGATCY	2 cut(s)	259, 573
BstYI	RGATCY	2 cut(s)	259, 573
BstZ17I	GTATAC	1 cut(s)	757
BsuRI	GGCC	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	89, 393, 1032
BtsIMutI	CAGTG	2 cut(s)	690, 877
Cac8I	GCNNGC	2 cut(s)	70, 207
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	816, 948
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	3 cut(s)	422, 645, 807
CviQI	GTAC	2 cut(s)	816, 948
DdeI	CTNAG	7 cut(s)	234, 240, 353, 764, 885, 1164, 1353
DpnI	GATC	3 cut(s)	261, 456, 575
DpnII	GATC	3 cut(s)	259, 454, 573
DraI	TTTAAA	1 cut(s)	909
DriI	GACNNNNNGTC	1 cut(s)	1345
Eam1104I	CTCTTC	3 cut(s)	3, 564, 1247
Eam1105I	GACNNNNNGTC	1 cut(s)	1345
EarI	CTCTTC	3 cut(s)	3, 564, 1247
Ecl136II	GAGCTC	1 cut(s)	1105
Eco130I	CCWWGG	1 cut(s)	847
Eco24I	GRGCYC	2 cut(s)	972, 1107
Eco32I	GATATC	2 cut(s)	976, 1083
Eco53kI	GAGCTC	1 cut(s)	1105
Eco88I	CYCGRG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	1105
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	439
EcoRV	GATATC	2 cut(s)	976, 1083
EcoT14I	CCWWGG	1 cut(s)	847
EcoT38I	GRGCYC	2 cut(s)	972, 1107
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	3 cut(s)	425, 648, 810
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	3 cut(s)	421, 644, 806
FauI	CCCGC	1 cut(s)	1168
FauNDI	CATATG	1 cut(s)	459
FblI	GTMKAC	2 cut(s)	253, 756
Fnu4HI	GCNGC	3 cut(s)	675, 710, 729
FokI	GGATG	3 cut(s)	96, 400, 1019
FriOI	GRGCYC	2 cut(s)	972, 1107
Fsp4HI	GCNGC	3 cut(s)	675, 710, 729
FspBI	CTAG	1 cut(s)	960
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	3 cut(s)	675, 710, 729
HaeIII	GGCC	1 cut(s)	418
HapII	CCGG	3 cut(s)	165, 180, 257
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	425, 648, 810
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	5 cut(s)	230, 655, 779, 883, 1238
HpaII	CCGG	3 cut(s)	165, 180, 257
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	3 cut(s)	254, 757, 1093
Hpy188I	TCNGA	5 cut(s)	235, 466, 486, 765, 843
Hpy188III	TCNNGA	6 cut(s)	131, 296, 310, 509, 581, 1242
Hpy8I	GTNNAC	3 cut(s)	254, 757, 1093
HpyAV	CCTTC	4 cut(s)	105, 128, 128, 1251
HpyCH4III	ACNGT	3 cut(s)	324, 528, 694
HpyCH4IV	ACGT	3 cut(s)	29, 250, 1066
HpyCH4V	TGCA	8 cut(s)	35, 191, 205, 305, 391, 434, 1202, 1223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 55, 272, 338
HpyF3I	CTNAG	7 cut(s)	234, 240, 353, 764, 885, 1164, 1353
HpySE526I	ACGT	3 cut(s)	29, 250, 1066
Hsp92II	CATG	3 cut(s)	425, 648, 810
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	259, 454, 573
LmnI	GCTCC	4 cut(s)	55, 182, 843, 902
Lsp1109I	GCAGC	2 cut(s)	661, 721
LweI	GCATC	1 cut(s)	378
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	3 cut(s)	29, 250, 1066
MaeIII	GTNAC	2 cut(s)	1298, 1331
MalI	GATC	3 cut(s)	261, 456, 575
MbiI	CCGCTC	2 cut(s)	586, 1055
MboI	GATC	3 cut(s)	259, 454, 573
MflI	RGATCY	2 cut(s)	259, 573
MhlI	GDGCHC	2 cut(s)	972, 1107
MluCI	AATT	5 cut(s)	102, 147, 192, 1000, 1018
MlyI	GAGTC	1 cut(s)	877
MmeI	TCCRAC	3 cut(s)	314, 352, 1170
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	4 cut(s)	63, 555, 705, 908
MspA1I	CMGCKG	1 cut(s)	1163
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	3 cut(s)	165, 180, 257
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	4 cut(s)	46, 55, 272, 338
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	3 cut(s)	259, 454, 573
NlaIII	CATG	3 cut(s)	425, 648, 810
NlaIV	GGNNCC	2 cut(s)	261, 845
NsbI	TGCGCA	1 cut(s)	159
NspI	RCATGY	2 cut(s)	648, 810
NspV	TTCGAA	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	294
PciI	ACATGT	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	1 cut(s)	1063
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	230, 655, 779, 1238
PflFI	GACNNNGTC	1 cut(s)	886
PflMI	CCANNNNNTGG	1 cut(s)	565
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	676, 711, 730
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
PscI	ACATGT	1 cut(s)	806
Psp124BI	GAGCTC	1 cut(s)	1107
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	261, 845
PsuI	RGATCY	2 cut(s)	259, 573
PsyI	GACNNNGTC	1 cut(s)	886
RsaI	GTAC	2 cut(s)	817, 949
RsaNI	GTAC	2 cut(s)	816, 948
SacI	GAGCTC	1 cut(s)	1107
SaqAI	TTAA	4 cut(s)	63, 555, 705, 908
SatI	GCNGC	3 cut(s)	675, 710, 729
Sau3AI	GATC	3 cut(s)	259, 454, 573
SchI	GAGTC	1 cut(s)	877
ScrFI	CCNGG	1 cut(s)	441
SduI	GDGCHC	2 cut(s)	972, 1107
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	628
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	4 cut(s)	215, 294, 581, 704
SmoI	CTYRAG	4 cut(s)	215, 294, 581, 704
Sse9I	AATT	5 cut(s)	102, 147, 192, 1000, 1018
SsiI	CCGC	4 cut(s)	586, 729, 1053, 1161
SspI	AATATT	1 cut(s)	686
SspMI	CTAG	1 cut(s)	960
SstI	GAGCTC	1 cut(s)	1107
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	847
TaaI	ACNGT	3 cut(s)	324, 528, 694
TaiI	ACGT	3 cut(s)	32, 253, 1069
TaqI	TCGA	5 cut(s)	295, 628, 696, 972, 1107
TasI	AATT	5 cut(s)	102, 147, 192, 1000, 1018
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	4 cut(s)	230, 655, 779, 1238
Tru1I	TTAA	4 cut(s)	63, 555, 705, 908
Tru9I	TTAA	4 cut(s)	63, 555, 705, 908
TscAI	CASTG	2 cut(s)	697, 877
TseI	GCWGC	2 cut(s)	674, 709
TspDTI	ATGAA	6 cut(s)	528, 549, 1188, 1241, 1247, 1287
TspRI	CASTG	2 cut(s)	697, 877
Tth111I	GACNNNGTC	1 cut(s)	886
Van91I	CCANNNNNTGG	1 cut(s)	565
Vha464I	CTTAAG	1 cut(s)	704
XagI	CCTNNNNNAGG	1 cut(s)	243
XapI	RAATTY	2 cut(s)	102, 1018
XceI	RCATGY	2 cut(s)	648, 810
XhoI	CTCGAG	1 cut(s)	294
XmiI	GTMKAC	2 cut(s)	253, 756
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.