Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Reverse (-)

7503689 .. 7509737

Gene Structure 6049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCCACCGACGAAGAGAAGCAGACGACGACGTTTAAGACTTTGGGGATATGCGACGAATTGGTGGATGCATGTCAAAAATTGGGCTGGACAGTCCCTACCCCAATTCAAGTCGAATCCATGCCTTCAGCCCTTGATGGAAAAGACTTGATCGCACTTGCACAAACTGGTTCGGGTAAAACTGGAGCCTTTGCGCTACCAATATTGCAAGAGTTAATAAATTCCCCACAAGCATTTTTTGCTTGCGTTCTGTCCCCGACAAGAGAGCTTGCAATTCAGATTGCTGAGCAGTTTCAAGCTTTAGGCTCAGAGATTGGTGTCAAGTGTGCAGTGCTAGTTGGAGGAGTTGACATGGTGCAACAATCTATCAATCTTGCAAAGCGGCCACATGTTGTTGTTGCAACACCTGGACGCCTCATGGATCATCTATCGAACACAAAAGGATTTTCTCTTCGCTCATTGAAATATTTGGTTTTAGATGAGGCTGACAGGTTGCTTAACGAGGACTTTGAGAAATCAATTGATGAAATCCTGAATGTCATCCCTCGTGATCGGAGAACGTACTTATTTTCTGCTACCATGACTAAAAAGGTCAAAAAGCTGCAACGGGCTTGTTTAAGGAACCCTGTGAAGATTGAAGTAGCATCAAAATATTCTACTGTTGACACACTAAATCAGCAGTATCGTTTTCTGCCGGCTAAGTACAAGGATTGCTATCTTGTATATATTTTGACCGAGAAGTGTCAGTGTACAACAATGGTATTTACTCGTACATGTGATGCAACACAGCTTTTGGCTTTGATGCTTCGAAATCTTGGCATAAGGGCCATCCCAATTAGTGGTCATATGACCCAGTCAAAAAGGCTTGGCGCCTTAAATATGTTTAAAGCTGGAGAGTGTAATGTACTTATTTGCACTGATGTGGCCAGTAGAGGATTGGATATTCCATCAGTAGATATGGTTATTAATTATGACATCCCCACAAATTCAAAGGATTATATCCATCGAGTAGGAAGAACAGCTCGTGCTGGACGATATGGGGTTGCAATCTCTCTTGTGAATCAGTACGAGTTGGAGTGGTATATACAGATAGAGAAGCTTATTGACAAAAAGTTACCCGAATTCCCTGCTGAAGAAGATGAAGTCCTGCTATTGTTTGAACGTGTCAAAGAGGCCAAAAGACTGGCCCTGAAGAAAATTAAAGACGGTGGAGGCAAGAAGAGGAAGGGTGAAAACTACGGCGAGGAGGAGGATATTGAGAAGTATTTTGGTCACAAGGGTGGAAAGTCCAAGAAGTTTAAAGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

437

Amino Acids

48.83

Weight (kDa)

8.92

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	869
AccB7I	CCANNNNNTGG	1 cut(s)	839
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	429
AcoI	YGGCCR	3 cut(s)	3, 383, 924
AcsI	RAATTY	3 cut(s)	220, 985, 1121
AcuI	CTGAAG	3 cut(s)	111, 1152, 1211
AcyI	GRCGYC	2 cut(s)	412, 870
AfaI	GTAC	6 cut(s)	563, 704, 751, 772, 906, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	839
AflIII	ACRYGT	3 cut(s)	388, 773, 1162
AgsI	TTSAA	6 cut(s)	110, 296, 463, 638, 990, 1160
AjnI	CCWGG	1 cut(s)	406
AleI	CACNNNNGTG	2 cut(s)	920, 1278
AluBI	AGCT	7 cut(s)	268, 299, 601, 790, 890, 1022, 1099
AluI	AGCT	7 cut(s)	268, 299, 601, 790, 890, 1022, 1099
AlwI	GGATC	1 cut(s)	429
AoxI	GGCC	6 cut(s)	3, 383, 825, 924, 1173, 1185
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	3 cut(s)	220, 985, 1121
AseI	ATTAAT	1 cut(s)	966
AspLEI	GCGC	2 cut(s)	196, 872
AspS9I	GGNCC	2 cut(s)	825, 1186
AsuHPI	GGTGA	1 cut(s)	1241
AsuII	TTCGAA	1 cut(s)	808
BalI	TGGCCA	2 cut(s)	5, 926
BanI	GGYRCC	1 cut(s)	869
BauI	CACGAG	2 cut(s)	546, 1023
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	4 cut(s)	131, 836, 955, 1011
BceAI	ACGGC	1 cut(s)	1255
BcgI	CGANNNNNNTGC	2 cut(s)	1109, 1143
BciT130I	CCWGG	1 cut(s)	408
BfaI	CTAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	873
BisI	GCNGC	2 cut(s)	383, 602
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	384, 603
Bme1390I	CCNGG	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	825, 1186
BmiI	GGNNCC	3 cut(s)	187, 623, 871
BmrFI	CCNGG	1 cut(s)	408
BmrI	ACTGGG	1 cut(s)	847
BmsI	GCATC	4 cut(s)	58, 653, 769, 792
BmuI	ACTGGG	1 cut(s)	847
BpmI	CTGGAG	2 cut(s)	204, 912
Bpu1102I	GCTNAGC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	808
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	2 cut(s)	412, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	839
Bse118I	RCCGGY	1 cut(s)	694
Bse1I	ACTGG	5 cut(s)	172, 187, 853, 927, 1188
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	408
BseGI	GGATG	4 cut(s)	73, 540, 828, 975
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	1 cut(s)	839
BseMII	CTCAG	2 cut(s)	276, 321
BseNI	ACTGG	5 cut(s)	172, 187, 853, 927, 1188
BseRI	GAGGAG	3 cut(s)	357, 1259, 1262
BseXI	GCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	6 cut(s)	5, 385, 827, 926, 1175, 1187
BshNI	GGYRCC	1 cut(s)	869
BsiSI	CCGG	1 cut(s)	695
BslFI	GGGAC	2 cut(s)	80, 238
BslI	CCNNNNNNNGG	1 cut(s)	839
BsmFI	GGGAC	2 cut(s)	80, 238
BsnI	GGCC	6 cut(s)	5, 385, 827, 926, 1175, 1187
Bsp119I	TTCGAA	1 cut(s)	808
Bsp1407I	TGTACA	1 cut(s)	749
Bsp143I	GATC	3 cut(s)	150, 421, 550
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	6 cut(s)	5, 385, 827, 926, 1175, 1187
BspCNI	CTCAG	2 cut(s)	277, 320
BspLI	GGNNCC	3 cut(s)	187, 623, 871
BspPI	GGATC	1 cut(s)	429
BspT104I	TTCGAA	1 cut(s)	808
BspT107I	GGYRCC	1 cut(s)	869
BsrFI	RCCGGY	1 cut(s)	694
BsrGI	TGTACA	1 cut(s)	749
BsrI	ACTGG	5 cut(s)	172, 187, 853, 927, 1188
BssAI	RCCGGY	1 cut(s)	694
BssMI	GATC	3 cut(s)	150, 421, 550
BssNI	GRCGYC	2 cut(s)	412, 870
BssSI	CACGAG	2 cut(s)	546, 1023
Bst2BI	CACGAG	2 cut(s)	546, 1023
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	3 cut(s)	94, 661, 1208
Bst6I	CTCTTC	3 cut(s)	9, 456, 1214
BstACI	GRCGYC	2 cut(s)	412, 870
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	749
BstBI	TTCGAA	1 cut(s)	808
BstC8I	GCNNGC	3 cut(s)	244, 270, 696
BstDEI	CTNAG	3 cut(s)	285, 307, 699
BstF5I	GGATG	4 cut(s)	73, 540, 828, 975
BstH2I	RGCGCY	1 cut(s)	873
BstHHI	GCGC	2 cut(s)	196, 872
BstKTI	GATC	3 cut(s)	153, 424, 553
BstMBI	GATC	3 cut(s)	150, 421, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	3 cut(s)	75, 392, 777
BstSCI	CCNGG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	588
BstXI	CCANNNNNNTGG	1 cut(s)	1183
BsuRI	GGCC	6 cut(s)	5, 385, 827, 926, 1175, 1187
BtsCI	GGATG	4 cut(s)	73, 540, 828, 975
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	336, 752, 915
Cac8I	GCNNGC	3 cut(s)	244, 270, 696
CfoI	GCGC	2 cut(s)	196, 872
Cfr10I	RCCGGY	1 cut(s)	694
Cfr13I	GGNCC	2 cut(s)	825, 1186
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	6 cut(s)	562, 703, 750, 771, 905, 1066
CviAII	CATG	7 cut(s)	72, 121, 352, 389, 418, 580, 774
CviQI	GTAC	6 cut(s)	562, 703, 750, 771, 905, 1066
DdeI	CTNAG	3 cut(s)	285, 307, 699
DinI	GGCGCC	1 cut(s)	871
DpnI	GATC	3 cut(s)	152, 423, 552
DpnII	GATC	3 cut(s)	150, 421, 550
DraI	TTTAAA	2 cut(s)	886, 1300
EaeI	YGGCCR	3 cut(s)	3, 383, 924
Eam1104I	CTCTTC	3 cut(s)	9, 456, 1214
EarI	CTCTTC	3 cut(s)	9, 456, 1214
Eco57I	CTGAAG	3 cut(s)	111, 1152, 1211
EcoRI	GAATTC	1 cut(s)	1121
EcoRII	CCWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	73
EgeI	GGCGCC	1 cut(s)	871
EheI	GGCGCC	1 cut(s)	871
FaeI	CATG	7 cut(s)	75, 124, 355, 392, 421, 583, 777
FaqI	GGGAC	2 cut(s)	80, 238
FatI	CATG	7 cut(s)	71, 120, 351, 388, 417, 579, 773
FauNDI	CATATG	1 cut(s)	846
Fnu4HI	GCNGC	2 cut(s)	383, 602
FokI	GGATG	4 cut(s)	80, 527, 815, 962
Fsp4HI	GCNGC	2 cut(s)	383, 602
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	2 cut(s)	195, 871
GluI	GCNGC	2 cut(s)	383, 602
GsuI	CTGGAG	2 cut(s)	204, 912
HaeII	RGCGCY	1 cut(s)	873
HaeIII	GGCC	6 cut(s)	5, 385, 827, 926, 1175, 1187
HapII	CCGG	1 cut(s)	695
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	2 cut(s)	196, 872
Hin1I	GRCGYC	2 cut(s)	412, 870
Hin1II	CATG	7 cut(s)	75, 124, 355, 392, 421, 583, 777
Hin6I	GCGC	2 cut(s)	194, 870
HinP1I	GCGC	2 cut(s)	194, 870
HincII	GTYRAC	2 cut(s)	349, 664
HindII	GTYRAC	2 cut(s)	349, 664
HindIII	AAGCTT	2 cut(s)	297, 1097
HinfI	GANTC	2 cut(s)	116, 1060
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	1 cut(s)	1241
Hpy166II	GTNNAC	3 cut(s)	349, 664, 750
Hpy188I	TCNGA	3 cut(s)	279, 310, 555
Hpy188III	TCNNGA	2 cut(s)	532, 548
Hpy8I	GTNNAC	3 cut(s)	349, 664, 750
Hpy99I	CGWCG	4 cut(s)	14, 31, 34, 59
HpyAV	CCTTC	2 cut(s)	135, 1219
HpyCH4III	ACNGT	3 cut(s)	94, 661, 1208
HpyCH4IV	ACGT	3 cut(s)	32, 560, 1162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	3 cut(s)	285, 307, 699
HpySE526I	ACGT	3 cut(s)	32, 560, 1162
Hsp92I	GRCGYC	2 cut(s)	412, 870
Hsp92II	CATG	7 cut(s)	75, 124, 355, 392, 421, 583, 777
HspAI	GCGC	2 cut(s)	194, 870
KasI	GGCGCC	1 cut(s)	869
KroI	GCCGGC	1 cut(s)	694
KroNI	GCCGGC	1 cut(s)	696
Kzo9I	GATC	3 cut(s)	150, 421, 550
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	4 cut(s)	58, 653, 769, 792
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	3 cut(s)	32, 560, 1162
MaeIII	GTNAC	2 cut(s)	1113, 1271
MalI	GATC	3 cut(s)	152, 423, 552
MboI	GATC	3 cut(s)	150, 421, 550
MboII	GAAGA	8 cut(s)	26, 443, 643, 1026, 1145, 1148, 1204, 1231
MfeI	CAATTG	1 cut(s)	519
MlsI	TGGCCA	2 cut(s)	5, 926
MluNI	TGGCCA	2 cut(s)	5, 926
Mly113I	GGCGCC	1 cut(s)	870
MmeI	TCCRAC	2 cut(s)	319, 1053
Mox20I	TGGCCA	2 cut(s)	5, 926
Mph1103I	ATGCAT	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	694
MscI	TGGCCA	2 cut(s)	5, 926
MseI	TTAA	9 cut(s)	36, 215, 498, 617, 875, 885, 966, 1200, 1299
MslI	CAYNNNNRTG	2 cut(s)	920, 1278
Msp20I	TGGCCA	2 cut(s)	5, 926
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	696
NarI	GGCGCC	1 cut(s)	870
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	3 cut(s)	150, 421, 550
NgoMIV	GCCGGC	1 cut(s)	694
NlaIII	CATG	7 cut(s)	75, 124, 355, 392, 421, 583, 777
NlaIV	GGNNCC	3 cut(s)	187, 623, 871
NmuCI	GTSAC	1 cut(s)	1271
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	3 cut(s)	75, 392, 777
NspV	TTCGAA	1 cut(s)	808
OliI	CACNNNNGTG	2 cut(s)	920, 1278
PciI	ACATGT	2 cut(s)	388, 773
PcsI	WCGNNNNNNNCGW	1 cut(s)	1030
PdiI	GCCGGC	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	116, 1060
PflFI	GACNNNGTC	1 cut(s)	853
PflMI	CCANNNNNTGG	1 cut(s)	839
PkrI	GCNGC	2 cut(s)	384, 603
PluTI	GGCGCC	1 cut(s)	873
PscI	ACATGT	2 cut(s)	388, 773
PshBI	ATTAAT	1 cut(s)	966
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	187, 623, 871
PspPI	GGNCC	2 cut(s)	825, 1186
PsyI	GACNNNGTC	1 cut(s)	853
RsaI	GTAC	6 cut(s)	563, 704, 751, 772, 906, 1067
RsaNI	GTAC	6 cut(s)	562, 703, 750, 771, 905, 1066
RseI	CAYNNNNRTG	2 cut(s)	920, 1278
SaqAI	TTAA	9 cut(s)	36, 215, 498, 617, 875, 885, 966, 1200, 1299
SatI	GCNGC	2 cut(s)	383, 602
Sau3AI	GATC	3 cut(s)	150, 421, 550
Sau96I	GGNCC	2 cut(s)	825, 1186
ScrFI	CCNGG	1 cut(s)	408
SfaNI	GCATC	4 cut(s)	58, 653, 769, 792
SfoI	GGCGCC	1 cut(s)	871
SfuI	TTCGAA	1 cut(s)	808
SmiMI	CAYNNNNRTG	2 cut(s)	920, 1278
SsiI	CCGC	1 cut(s)	382
SspDI	GGCGCC	1 cut(s)	869
SspI	AATATT	3 cut(s)	204, 467, 653
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	94, 661, 1208
TaiI	ACGT	3 cut(s)	35, 563, 1165
TaqI	TCGA	4 cut(s)	114, 431, 808, 1006
TaqII	GACCGA	1 cut(s)	749
TatI	WGTACW	3 cut(s)	702, 749, 904
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	116, 1060
Tru1I	TTAA	9 cut(s)	36, 215, 498, 617, 875, 885, 966, 1200, 1299
Tru9I	TTAA	9 cut(s)	36, 215, 498, 617, 875, 885, 966, 1200, 1299
TscAI	CASTG	3 cut(s)	336, 752, 922
TseFI	GTSAC	1 cut(s)	1271
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	1271
TspDTI	ATGAA	2 cut(s)	540, 1155
TspRI	CASTG	3 cut(s)	336, 752, 922
Tth111I	GACNNNGTC	1 cut(s)	853
Van91I	CCANNNNNTGG	1 cut(s)	839
VspI	ATTAAT	1 cut(s)	966
XapI	RAATTY	3 cut(s)	220, 985, 1121
XceI	RCATGY	3 cut(s)	75, 392, 777
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XspI	CTAG	1 cut(s)	335
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.