Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Forward (+)

6326293 .. 6331246

Gene Structure 4954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGAAATCCCTACCCCTATTCAAGCCGAAGTGATTCCTCATGCCCTCGAAGGAAAAGATTTGATCGCACTTTCCCAAACGGGTTCGGGTAAAACCGGAGCCTTTGCCCTTCCAATATTGCAAGCTCTATTCGATTCTCTCCAACCCTTTTTTGCTCTGGTTCTGTCCCCGACAAGGGAGCTTGCACTTCAGATTGATCAGCAGTTCCAAGCTCTTGGGCCTGGCATTGGTGCCAAGTCTGTAGCGCTTGTTGGAGGAGAGAGTGAGGTGCAACAATCTACTGTTCTTGCAAAGCGGCCGCATATTATTGTTGCAACACCTGGACGCCTCCTTCATCATCTAACCAAGACAAGAGGATTCTCTCTAGGCACAATTAAATATTTGGTAGGATTTGATAATGTTATGTCAGCTTCAGATGAGGCAGACAGGTTGCTTGGTGAGGAGTTTCAGAAAACAACAAATGAAATTCTGAAGGTCATTCCTCATGGTGGTGAACGGAGAACATATTTATTTTCCGCTACTATGACCAACAAGGTCAAGAAGGTGGCAAGGGCTGGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCTAAGTATTCTACGGTTGAAACCCTACAGCAGCAAATGATGAGTACACCAGTGCAGTACAAGGGATGTTATCTCGTATATCTTCTTAAGAAGTGGCAACGCACTGACCAAAAAAAGAAGAAGTGCCAACGCAGAGCAATGGTGTTTGCTGAAAAATGCGCAGAAACACCCTTTTTGGCTTGTATGCTTCAAAATCTTGGAATCAAGGCCATCCCCCTTCATGGTAAAATGAGCCAGTCGGAAAGAGTTGGAGCCTTAAATGTGTTCAAAGCTGGACAGAATAACGTACTTGTTTGCACTAATTTGCCAAGTAGAGGATTGGATATCCCATCAGTGGATATGGTTATCAATTATAATATGCCCGAGAATCCTAAGGATTATATACACCGAGTAGGAAGAACTGCTCGTGCCGGACAATCCGGTGTTGCAATCTCTCTGGTGAATCAGTTTGAAGTTGAGTATTTGTACAAGATAGAATCACTTATCGGGAAAAGGTTACCAAAACATCGTGCTACAGATGAAGAAGTCATGCAACTTTGTGAAGGTGTCAGAGAAGCCACAAGATTGGCTGCCAAGAAAATAAAAGAAAGCGGAGGCAAGAAGAGGAAGTGGGGAGGAGATGATGATGATGAGGAGGAAGATATTCTCAAGTATTTAAGTCACATGGATGGAAAGTCGAAGAAGTGGAACAGAATGTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

430

Amino Acids

47.89

Weight (kDa)

9.46

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	5 - 181	5.6e-40	DEAD/DEAH box helicase
Helicase_C	PF00271	235 - 334	3e-28	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	942
Acc16I	TGCGCA	1 cut(s)	748
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	4 cut(s)	295, 299, 516, 1179
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	465
AcuI	CTGAAG	3 cut(s)	173, 396, 491
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	5 cut(s)	634, 647, 876, 1055, 1286
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	7 cut(s)	174, 175, 227, 488, 809, 902, 922
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	6 cut(s)	23, 581, 608, 779, 856, 1040
AjnI	CCWGG	2 cut(s)	220, 319
AluBI	AGCT	5 cut(s)	125, 181, 212, 410, 860
AluI	AGCT	5 cut(s)	125, 181, 212, 410, 860
Ama87I	CYCGRG	1 cut(s)	950
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	3 cut(s)	218, 296, 795
ApeKI	GCWGC	2 cut(s)	619, 1157
ApoI	RAATTY	1 cut(s)	465
Asp700I	GAANNNNTTC	2 cut(s)	33, 1230
AspLEI	GCGC	2 cut(s)	247, 749
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	449, 503, 1039
AvaI	CYCGRG	1 cut(s)	950
AxyI	CCTNAGG	1 cut(s)	960
BanI	GGYRCC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	993
BbvI	GCAGC	2 cut(s)	631, 1144
BccI	CCATC	3 cut(s)	806, 925, 1250
BciT130I	CCWGG	2 cut(s)	222, 321
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	3 cut(s)	240, 614, 1101
BfoI	RGCGCY	1 cut(s)	248
BfrI	CTTAAG	1 cut(s)	674
BisI	GCNGC	4 cut(s)	296, 299, 620, 1158
BlsI	GCNGC	4 cut(s)	297, 300, 621, 1159
Bme1390I	CCNGG	2 cut(s)	222, 321
BmeT110I	CYCGRG	1 cut(s)	950
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	4 cut(s)	100, 232, 566, 841
BmrFI	CCNGG	2 cut(s)	222, 321
BmsI	GCATC	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	1220
BsaHI	GRCGYC	1 cut(s)	325
BsaWI	WCCGGW	2 cut(s)	95, 1007
Bsc4I	CCNNNNNNNGG	7 cut(s)	174, 175, 227, 488, 809, 902, 922
Bse1I	ACTGG	2 cut(s)	638, 823
Bse21I	CCTNAGG	1 cut(s)	960
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	222, 321
BseGI	GGATG	3 cut(s)	659, 798, 1261
BseLI	CCNNNNNNNGG	7 cut(s)	174, 175, 227, 488, 809, 902, 922
BseMI	GCAATG	1 cut(s)	732
BseNI	ACTGG	2 cut(s)	638, 823
BseRI	GAGGAG	4 cut(s)	270, 455, 1218, 1235
BseX3I	CGGCCG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	631, 1144
BsgI	GTGCAG	1 cut(s)	662
Bsh1285I	CGRYCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	220, 298, 797
BshNI	GGYRCC	1 cut(s)	230
BsiEI	CGRYCG	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	950
BsiSI	CCGG	3 cut(s)	96, 999, 1008
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	7 cut(s)	174, 175, 227, 488, 809, 902, 922
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	3 cut(s)	220, 298, 797
BsoBI	CYCGRG	1 cut(s)	950
Bsp1407I	TGTACA	2 cut(s)	1053, 1284
Bsp143I	GATC	2 cut(s)	63, 196
BspACI	CCGC	4 cut(s)	295, 299, 516, 1179
BspANI	GGCC	3 cut(s)	220, 298, 797
BspLI	GGNNCC	4 cut(s)	100, 232, 566, 841
BspT107I	GGYRCC	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	732
BsrGI	TGTACA	2 cut(s)	1053, 1284
BsrI	ACTGG	2 cut(s)	638, 823
BssMI	GATC	2 cut(s)	63, 196
BssNI	GRCGYC	1 cut(s)	325
BssSI	CACGAG	1 cut(s)	993
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	2 cut(s)	222, 321
Bst4CI	ACNGT	2 cut(s)	283, 604
Bst6I	CTCTTC	1 cut(s)	1184
BstACI	GRCGYC	1 cut(s)	325
BstAFI	CTTAAG	1 cut(s)	674
BstAUI	TGTACA	2 cut(s)	1053, 1284
BstC8I	GCNNGC	2 cut(s)	123, 183
BstDEI	CTNAG	3 cut(s)	560, 591, 960
BstEII	GGTNACC	1 cut(s)	1083
BstF5I	GGATG	3 cut(s)	659, 798, 1261
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	247, 749
BstKTI	GATC	2 cut(s)	66, 199
BstMBI	GATC	2 cut(s)	63, 196
BstMCI	CGRYCG	1 cut(s)	299
BstNI	CCWGG	2 cut(s)	222, 321
BstPI	GGTNACC	1 cut(s)	1083
BstSCI	CCNGG	2 cut(s)	220, 319
BstSFI	CTRYAG	3 cut(s)	240, 614, 1101
BstV1I	GCAGC	2 cut(s)	631, 1144
BstXI	CCANNNNNNTGG	2 cut(s)	215, 1153
BstZI	CGGCCG	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	960
BsuRI	GGCC	3 cut(s)	220, 298, 797
BtsCI	GGATG	3 cut(s)	659, 798, 1261
BtsIMutI	CAGTG	3 cut(s)	645, 690, 927
Cac8I	GCNNGC	2 cut(s)	123, 183
CciNI	GCGGCCGC	1 cut(s)	296
CfoI	GCGC	2 cut(s)	247, 749
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	5 cut(s)	633, 646, 875, 1054, 1285
CviAII	CATG	5 cut(s)	41, 485, 809, 1117, 1252
CviQI	GTAC	5 cut(s)	633, 646, 875, 1054, 1285
DdeI	CTNAG	3 cut(s)	560, 591, 960
DpnI	GATC	2 cut(s)	65, 198
DpnII	GATC	2 cut(s)	63, 196
EaeI	YGGCCR	1 cut(s)	296
EagI	CGGCCG	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	1184
EarI	CTCTTC	1 cut(s)	1184
EclXI	CGGCCG	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	913
Eco47III	AGCGCT	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	296
Eco57I	CTGAAG	3 cut(s)	173, 396, 491
Eco81I	CCTNAGG	1 cut(s)	960
Eco88I	CYCGRG	1 cut(s)	950
Eco91I	GGTNACC	1 cut(s)	1083
EcoO65I	GGTNACC	1 cut(s)	1083
EcoRII	CCWGG	2 cut(s)	220, 319
EcoRV	GATATC	1 cut(s)	913
FaeI	CATG	5 cut(s)	44, 488, 812, 1120, 1255
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	5 cut(s)	40, 484, 808, 1116, 1251
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	296, 299, 620, 1158
FokI	GGATG	3 cut(s)	666, 785, 1268
Fsp4HI	GCNGC	4 cut(s)	296, 299, 620, 1158
FspBI	CTAG	1 cut(s)	365
FspI	TGCGCA	1 cut(s)	748
GlaI	GCGC	2 cut(s)	246, 748
GluI	GCNGC	4 cut(s)	296, 299, 620, 1158
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	3 cut(s)	220, 298, 797
HapII	CCGG	3 cut(s)	96, 999, 1008
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	2 cut(s)	247, 749
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	5 cut(s)	44, 488, 812, 1120, 1255
Hin6I	GCGC	2 cut(s)	245, 747
HinP1I	GCGC	2 cut(s)	245, 747
HinfI	GANTC	7 cut(s)	34, 134, 357, 789, 955, 1030, 1064
HpaII	CCGG	3 cut(s)	96, 999, 1008
HphI	GGTGA	3 cut(s)	449, 503, 1039
Hpy166II	GTNNAC	2 cut(s)	494, 635
Hpy188I	TCNGA	6 cut(s)	192, 415, 450, 471, 829, 1139
Hpy188III	TCNNGA	2 cut(s)	538, 1075
Hpy8I	GTNNAC	2 cut(s)	494, 635
HpyAV	CCTTC	7 cut(s)	44, 119, 341, 466, 535, 815, 1124
HpyCH4III	ACNGT	2 cut(s)	283, 604
HpyCH4IV	ACGT	1 cut(s)	873
HpyCH4V	TGCA	9 cut(s)	121, 185, 271, 290, 314, 643, 885, 1016, 1120
HpyF3I	CTNAG	3 cut(s)	560, 591, 960
HpySE526I	ACGT	1 cut(s)	873
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	5 cut(s)	44, 488, 812, 1120, 1255
HspAI	GCGC	2 cut(s)	245, 747
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	63, 196
LmnI	GCTCC	3 cut(s)	98, 178, 839
Lsp1109I	GCAGC	2 cut(s)	631, 1144
LweI	GCATC	1 cut(s)	596
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	873
MaeIII	GTNAC	2 cut(s)	1083, 1247
MalI	GATC	2 cut(s)	65, 198
MboI	GATC	2 cut(s)	63, 196
MboII	GAAGA	8 cut(s)	586, 662, 718, 996, 1121, 1201, 1238, 1279
MluCI	AATT	4 cut(s)	372, 465, 889, 937
MmeI	TCCRAC	4 cut(s)	166, 232, 807, 817
MroXI	GAANNNNTTC	2 cut(s)	33, 1230
MseI	TTAA	4 cut(s)	375, 675, 845, 1244
MslI	CAYNNNNRTG	2 cut(s)	489, 1254
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	3 cut(s)	96, 999, 1008
MspR9I	CCNGG	2 cut(s)	222, 321
MvaI	CCWGG	2 cut(s)	222, 321
NdeII	GATC	2 cut(s)	63, 196
NlaIII	CATG	5 cut(s)	44, 488, 812, 1120, 1255
NlaIV	GGNNCC	4 cut(s)	100, 232, 566, 841
NmuCI	GTSAC	1 cut(s)	1247
NotI	GCGGCCGC	1 cut(s)	296
NsbI	TGCGCA	1 cut(s)	748
PdmI	GAANNNNTTC	2 cut(s)	33, 1230
PfeI	GAWTC	7 cut(s)	34, 134, 357, 789, 955, 1030, 1064
PkrI	GCNGC	4 cut(s)	297, 300, 621, 1159
PsiI	TTATAA	1 cut(s)	942
Psp6I	CCWGG	2 cut(s)	220, 319
PspEI	GGTNACC	1 cut(s)	1083
PspGI	CCWGG	2 cut(s)	220, 319
PspN4I	GGNNCC	4 cut(s)	100, 232, 566, 841
PspPI	GGNCC	1 cut(s)	218
PsrI	GAACNNNNNNTAC	1 cut(s)	1268
RsaI	GTAC	5 cut(s)	634, 647, 876, 1055, 1286
RsaNI	GTAC	5 cut(s)	633, 646, 875, 1054, 1285
RseI	CAYNNNNRTG	2 cut(s)	489, 1254
SaqAI	TTAA	4 cut(s)	375, 675, 845, 1244
SatI	GCNGC	4 cut(s)	296, 299, 620, 1158
Sau3AI	GATC	2 cut(s)	63, 196
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	222, 321
SfaNI	GCATC	1 cut(s)	596
SfcI	CTRYAG	3 cut(s)	240, 614, 1101
SmiMI	CAYNNNNRTG	2 cut(s)	489, 1254
SmlI	CTYRAG	2 cut(s)	674, 1235
SmoI	CTYRAG	2 cut(s)	674, 1235
Sse9I	AATT	4 cut(s)	372, 465, 889, 937
SsiI	CCGC	4 cut(s)	295, 299, 516, 1179
SspI	AATATT	2 cut(s)	117, 380
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	220, 319
TaaI	ACNGT	2 cut(s)	283, 604
TaiI	ACGT	1 cut(s)	876
TaqI	TCGA	3 cut(s)	48, 132, 1265
TasI	AATT	4 cut(s)	372, 465, 889, 937
TatI	WGTACW	4 cut(s)	632, 645, 1053, 1284
TauI	GCSGC	2 cut(s)	298, 301
TfiI	GAWTC	7 cut(s)	34, 134, 357, 789, 955, 1030, 1064
Tru1I	TTAA	4 cut(s)	375, 675, 845, 1244
Tru9I	TTAA	4 cut(s)	375, 675, 845, 1244
TscAI	CASTG	3 cut(s)	645, 697, 927
TseFI	GTSAC	1 cut(s)	1247
TseI	GCWGC	2 cut(s)	619, 1157
Tsp45I	GTSAC	1 cut(s)	1247
TspDTI	ATGAA	4 cut(s)	323, 477, 797, 1122
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	3 cut(s)	645, 697, 927
Vha464I	CTTAAG	1 cut(s)	674
XapI	RAATTY	1 cut(s)	465
XmnI	GAANNNNTTC	2 cut(s)	33, 1230
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.