Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Forward (+)

80596801 .. 80598350

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG589500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGACGCTGTCGAAAGAGAGGAGGAGGAGGTTAACACCCTTAAGCAGCAGTTTCGTTTTCTGCCGGACAAGTACAAGGATTGCTATCTGGTATATATTCTTACTGAGAAGCGCCAATCTACAGCAATTGTTTTTGCTCGTTCACCAGATGTATGCAGATTGGCTTTAATGCTTCAATATCTTGGCATAAGGGCTATCCCAATTACTGGACATATGGAAGAGTCGCAAAGACTTCTTGCCTCAGGTATGTTCAAAGCTGGACAGTTTAATGTACTTATCTGCACAGATATAGCAATTAGAGATTTGGATATTCCATCAGTCGATATTATTATTAGTTATGACATCCCCTCAAATCCTCAGTACCATGTCTATCGAATAGGACGAACCGCTTGTGACGGACGATCTGGAGTTGCAATCTCTCTAGTAAATCAGTATGAATTGGAGTGGTATACGAAGATAGAGAAGCTTATCGGCAAAGAGTTACCTGAATTTCCTGCTCAAGAAGAGGAAGTCCTACAATTTCTTGAACCTGTCAAAGAAGCCAAAATATTGGCCGAATCAGTACAAAACAAGCGGAAGTGGAGACAAGAAAGAAAGGATGGTGAAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

204

Amino Acids

23.65

Weight (kDa)

5.1

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	29 - 130	1.9e-17	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	449
AciI	CCGC	2 cut(s)	387, 574
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	488
AfaI	GTAC	4 cut(s)	74, 273, 362, 564
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	176, 253, 527
AluBI	AGCT	2 cut(s)	257, 466
AluI	AGCT	2 cut(s)	257, 466
Alw26I	GTCTC	1 cut(s)	577
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	135, 614
AxyI	CCTNAGG	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	322, 593
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	115
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	211
Bse21I	CCTNAGG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	84
BseGI	GGATG	2 cut(s)	342, 604
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	3 cut(s)	96, 255, 371
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	35, 38, 41
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	554
Bsp143I	GATC	1 cut(s)	401
BspACI	CCGC	2 cut(s)	387, 574
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	3 cut(s)	97, 254, 370
BspTI	CTTAAG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	401
BssNAI	GTATAC	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	3 cut(s)	213, 498, 600
BstAFI	CTTAAG	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	105, 241, 357
BstF5I	GGATG	2 cut(s)	342, 604
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstZ17I	GTATAC	1 cut(s)	450
Bsu36I	CCTNAGG	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	2 cut(s)	342, 604
CfoI	GCGC	1 cut(s)	114
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	73, 272, 361, 563
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	6 cut(s)	164, 194, 257, 466, 542, 554
CviKI_1	RGCY	6 cut(s)	164, 194, 257, 466, 542, 554
CviQI	GTAC	4 cut(s)	73, 272, 361, 563
DdeI	CTNAG	3 cut(s)	105, 241, 357
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	3 cut(s)	213, 498, 600
EarI	CTCTTC	3 cut(s)	213, 498, 600
Eco81I	CCTNAGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	368
FatI	CATG	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	449
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	2 cut(s)	329, 611
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	2 cut(s)	221, 557
HpaI	GTTAAC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	2 cut(s)	135, 614
Hpy166II	GTNNAC	3 cut(s)	34, 143, 450
Hpy188III	TCNNGA	3 cut(s)	405, 500, 524
Hpy8I	GTNNAC	3 cut(s)	34, 143, 450
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	156, 282, 413
HpyF3I	CTNAG	3 cut(s)	105, 241, 357
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	401
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	2 cut(s)	392, 480
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	3 cut(s)	230, 466, 515
MfeI	CAATTG	1 cut(s)	126
MluCI	AATT	6 cut(s)	126, 201, 294, 437, 488, 518
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	9 cut(s)	13, 16, 19, 22, 250, 358, 366, 499, 601
MseI	TTAA	4 cut(s)	33, 42, 167, 267
MspCI	CTTAAG	1 cut(s)	41
MspI	CCGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	1 cut(s)	368
NmuCI	GTSAC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	4 cut(s)	74, 273, 362, 564
RsaNI	GTAC	4 cut(s)	73, 272, 361, 563
SaqAI	TTAA	4 cut(s)	33, 42, 167, 267
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	401
SchI	GAGTC	1 cut(s)	230
SetI	ASST	6 cut(s)	33, 247, 259, 468, 487, 532
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	41, 498
SmoI	CTYRAG	2 cut(s)	41, 498
Sse9I	AATT	6 cut(s)	126, 201, 294, 437, 488, 518
SsiI	CCGC	2 cut(s)	387, 574
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	12, 321, 373
TasI	AATT	6 cut(s)	126, 201, 294, 437, 488, 518
TatI	WGTACW	3 cut(s)	72, 271, 562
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	4 cut(s)	33, 42, 167, 267
Tru9I	TTAA	4 cut(s)	33, 42, 167, 267
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	411
Tth111I	GACNNNGTC	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.