Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Forward (+)

20861277 .. 20866259

Gene Structure 4983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCGGCTACCGACGAAGAGAAGGAGGCGGCGACAACGACGACGACGACGACGTCGTTTAAGAATTTGGGGATATGCGACGAATTGGTGGATGCTTGTGAGAAATTGGGCTGGACAATCCCTACCCCAATTCAAGTCGAATCCATGCCTGCCGCCCTCGAAGGAAAGGACTTGATCGCACTTGCACAAACGGGTTCGGGTAAAACCGGCGCATTCGCGCTTCCTATACTGCAAGAACTAATAAAGACTCCACAATCCTTTTTCGCTTGCGTTCTGTCTCCAACGAGAGAGCTTGCAATTCAGATCGCCGAGCAGTTTGAAGCTTTGGGGTCCGAGATTGGCGTCAAGTGTGCAGTGCTTGTTGGAGGAGTGGACATGGTGCAACAATCTATCAATCTTGCAAAGCGGCCACATGTTGTTGTTGCGACACCTGGACGCCTCATGGATCATCTATCCAACACAAAAGGATTTTCTCTTCGCACGTTGAAATTTTTGGTTTTAGATGAGGCTGACAGGTTGCTTAATGAGGACTTTGAAAAGTCAATTGATGAAATTCTGAATGAAATCCCTCGTGATCGGAGGACATACTTATTCTCTGCTACTATGACTAAAAAGGTTCGGAAGCTGCAAAGGGCTTGCCTAAGGAACCCTGTGAAGATTGAAGTAGCGTCTAAGTATTCGACGGTTGACACGCTAAAGCAGCAGTATCGTTTTCTGCCAGCCAAGTACAAGGATTGCTATCTTGTATATATTCTGACAGAGAAGTCTCAGTGTACAACTATGGTATTCACCCGCACATGCGATGCAACACAAGTTTTAGCTTTGATGCTTCGAAATCTTGGCATAAGGGCCATCCCAATTAGTGGTCACATGAGCCAGTCAAAAAGGCTTGGAGCCTTAAATATGTTCAAAGCCGGAGAATGTAATGTACTTATCTGCACTGATGTGGCTAGTAGAGGATTGGATATTCCATCAGTGGATATGGTTATTAATTATGACATTCCCACAAATTCTAAGGATTATATCCATAGAGTTGGAAGGACTGCTCGTGCTGGACGATCTGGGGTTGCAATCTCTCTAGTGAACCAGTATGAGTTGGAGTGGTATATACAGATAGAGAAGCTTATCGGCAAAAAGTTACCCGAATTTTCTGCTCAAGAAGAGGAAGTCTTGCTACTGTTGGAACGTGTCGGACAGGCCAAAAGACTAGCCCAGATGAAAATTAAAGAGAGCGGAGGCAAGAAGAGGAAGGGGGGAAACAATGGTGAGGAGGAGGATATTGACAAGTACTTAGGTCACAAAGGAGGAGGAAAGTCCGGAGGAAAGTCGAAGAAGTTCAAAAAATCAAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

452

Amino Acids

49.93

Weight (kDa)

9.02

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	52, 763
AatII	GACGTC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	1233
AccII	CGCG	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	1316
AciI	CCGC	6 cut(s)	5, 29, 153, 406, 793, 1233
AclWI	GGATC	1 cut(s)	453
AcoI	YGGCCR	1 cut(s)	407
AcsI	RAATTY	5 cut(s)	64, 488, 552, 1009, 1145
AcyI	GRCGYC	3 cut(s)	53, 342, 436
AfaI	GTAC	4 cut(s)	728, 775, 930, 1289
AfiI	CCNNNNNNNGG	1 cut(s)	863
AflIII	ACRYGT	2 cut(s)	412, 1186
AgsI	TTSAA	7 cut(s)	134, 320, 487, 536, 662, 910, 1339
AjnI	CCWGG	1 cut(s)	430
AleI	CACNNNNGTG	1 cut(s)	944
AluBI	AGCT	5 cut(s)	292, 323, 625, 821, 1123
AluI	AGCT	5 cut(s)	292, 323, 625, 821, 1123
Alw26I	GTCTC	2 cut(s)	282, 771
AlwI	GGATC	1 cut(s)	453
Aor13HI	TCCGGA	1 cut(s)	1316
AoxI	GGCC	3 cut(s)	407, 849, 1197
ApeKI	GCWGC	2 cut(s)	625, 700
ApoI	RAATTY	5 cut(s)	64, 488, 552, 1009, 1145
AseI	ATTAAT	1 cut(s)	990
Asp700I	GAANNNNTTC	1 cut(s)	1334
AspLEI	GCGC	2 cut(s)	212, 220
AspS9I	GGNCC	2 cut(s)	330, 849
AsuHPI	GGTGA	2 cut(s)	781, 1277
AsuII	TTCGAA	1 cut(s)	832
AvaII	GGWCC	1 cut(s)	330
AxyI	CCTNAGG	1 cut(s)	641
BarI	GAAGNNNNNNTAC	2 cut(s)	1158, 1190
BauI	CACGAG	2 cut(s)	570, 1047
BbvI	GCAGC	2 cut(s)	612, 712
BccI	CCATC	2 cut(s)	860, 979
BcgI	CGANNNNNNTGC	4 cut(s)	689, 723, 1133, 1167
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	282, 771
BfaI	CTAG	3 cut(s)	951, 1079, 1208
BisI	GCNGC	6 cut(s)	6, 30, 153, 407, 626, 701
BlsI	GCNGC	6 cut(s)	7, 31, 154, 408, 627, 702
BmcAI	AGTACT	1 cut(s)	1289
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	330, 849
BmiI	GGNNCC	3 cut(s)	331, 647, 895
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	82, 793, 816
Bpu14I	TTCGAA	1 cut(s)	832
BpuEI	CTTGAG	1 cut(s)	1140
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	3 cut(s)	53, 342, 436
BsaWI	WCCGGW	1 cut(s)	1316
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	877, 1087
Bse21I	CCTNAGG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	1316
BseBI	CCWGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	97, 852
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	2 cut(s)	877, 1087
BseRI	GAGGAG	4 cut(s)	381, 1283, 1286, 1320
BseXI	GCAGC	2 cut(s)	612, 712
BsgI	GTGCAG	2 cut(s)	372, 922
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	3 cut(s)	409, 851, 1199
BsiSI	CCGG	3 cut(s)	207, 915, 1317
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	2 cut(s)	282, 771
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	409, 851, 1199
Bsp119I	TTCGAA	1 cut(s)	832
Bsp13I	TCCGGA	1 cut(s)	1316
Bsp1407I	TGTACA	1 cut(s)	773
Bsp143I	GATC	5 cut(s)	174, 303, 445, 574, 1058
BspACI	CCGC	6 cut(s)	5, 29, 153, 406, 793, 1233
BspANI	GGCC	3 cut(s)	409, 851, 1199
BspCNI	CTCAG	1 cut(s)	781
BspEI	TCCGGA	1 cut(s)	1316
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	331, 647, 895
BspPI	GGATC	1 cut(s)	453
BspT104I	TTCGAA	1 cut(s)	832
BsrBI	CCGCTC	1 cut(s)	1233
BsrFI	RCCGGY	1 cut(s)	206
BsrGI	TGTACA	1 cut(s)	773
BsrI	ACTGG	2 cut(s)	877, 1087
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	5 cut(s)	174, 303, 445, 574, 1058
BssNI	GRCGYC	3 cut(s)	53, 342, 436
BssSI	CACGAG	2 cut(s)	570, 1047
Bst2BI	CACGAG	2 cut(s)	570, 1047
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	685, 1179
Bst6I	CTCTTC	4 cut(s)	12, 480, 1155, 1238
BstACI	GRCGYC	3 cut(s)	53, 342, 436
BstAUI	TGTACA	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	832
BstC8I	GCNNGC	5 cut(s)	150, 268, 294, 637, 720
BstDEI	CTNAG	5 cut(s)	641, 672, 768, 1014, 1291
BstF5I	GGATG	2 cut(s)	97, 852
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	212, 220
BstKTI	GATC	5 cut(s)	177, 306, 448, 577, 1061
BstMAI	GTCTC	2 cut(s)	282, 771
BstMBI	GATC	5 cut(s)	174, 303, 445, 574, 1058
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	2 cut(s)	416, 801
BstSCI	CCNGG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	612, 712
BstXI	CCANNNNNNTGG	1 cut(s)	1034
Bsu36I	CCTNAGG	1 cut(s)	641
BsuRI	GGCC	3 cut(s)	409, 851, 1199
BtgZI	GCGATG	1 cut(s)	816
BtsCI	GGATG	2 cut(s)	97, 852
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	4 cut(s)	360, 776, 939, 981
Cac8I	GCNNGC	5 cut(s)	150, 268, 294, 637, 720
CfoI	GCGC	2 cut(s)	212, 220
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	330, 849
CseI	GACGC	3 cut(s)	331, 444, 657
Csp6I	GTAC	4 cut(s)	727, 774, 929, 1288
CviAII	CATG	6 cut(s)	145, 376, 413, 442, 798, 871
CviQI	GTAC	4 cut(s)	727, 774, 929, 1288
DdeI	CTNAG	5 cut(s)	641, 672, 768, 1014, 1291
DpnI	GATC	5 cut(s)	176, 305, 447, 576, 1060
DpnII	GATC	5 cut(s)	174, 303, 445, 574, 1058
DrdI	GACNNNNNNGTC	2 cut(s)	52, 763
DseDI	GACNNNNNNGTC	2 cut(s)	52, 763
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	4 cut(s)	12, 480, 1155, 1238
EarI	CTCTTC	4 cut(s)	12, 480, 1155, 1238
Eco47I	GGWCC	1 cut(s)	330
Eco81I	CCTNAGG	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	6 cut(s)	148, 379, 416, 445, 801, 874
FatI	CATG	6 cut(s)	144, 375, 412, 441, 797, 870
FauI	CCCGC	1 cut(s)	800
Fnu4HI	GCNGC	6 cut(s)	6, 30, 153, 407, 626, 701
FokI	GGATG	2 cut(s)	104, 839
Fsp4HI	GCNGC	6 cut(s)	6, 30, 153, 407, 626, 701
FspBI	CTAG	3 cut(s)	951, 1079, 1208
GlaI	GCGC	2 cut(s)	211, 219
GluI	GCNGC	6 cut(s)	6, 30, 153, 407, 626, 701
HaeIII	GGCC	3 cut(s)	409, 851, 1199
HapII	CCGG	3 cut(s)	207, 915, 1317
HgaI	GACGC	3 cut(s)	331, 444, 657
HhaI	GCGC	2 cut(s)	212, 220
Hin1I	GRCGYC	3 cut(s)	53, 342, 436
Hin1II	CATG	6 cut(s)	148, 379, 416, 445, 801, 874
Hin6I	GCGC	2 cut(s)	210, 218
HinP1I	GCGC	2 cut(s)	210, 218
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HindIII	AAGCTT	2 cut(s)	321, 1121
HinfI	GANTC	2 cut(s)	140, 247
HpaII	CCGG	3 cut(s)	207, 915, 1317
HphI	GGTGA	2 cut(s)	781, 1277
Hpy166II	GTNNAC	4 cut(s)	373, 688, 774, 1084
Hpy188I	TCNGA	7 cut(s)	303, 334, 558, 579, 621, 756, 1193
Hpy188III	TCNNGA	4 cut(s)	572, 1157, 1317, 1347
Hpy8I	GTNNAC	4 cut(s)	373, 688, 774, 1084
Hpy99I	CGWCG	9 cut(s)	17, 43, 46, 49, 52, 55, 58, 83, 685
HpyAV	CCTTC	4 cut(s)	16, 155, 1032, 1243
HpyCH4III	ACNGT	2 cut(s)	685, 1179
HpyCH4IV	ACGT	3 cut(s)	53, 482, 1186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	5 cut(s)	641, 672, 768, 1014, 1291
HpySE526I	ACGT	3 cut(s)	53, 482, 1186
Hsp92I	GRCGYC	3 cut(s)	53, 342, 436
Hsp92II	CATG	6 cut(s)	148, 379, 416, 445, 801, 874
HspAI	GCGC	2 cut(s)	210, 218
Kpn2I	TCCGGA	1 cut(s)	1316
Kzo9I	GATC	5 cut(s)	174, 303, 445, 574, 1058
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	2 cut(s)	612, 712
LweI	GCATC	3 cut(s)	82, 793, 816
MaeI	CTAG	3 cut(s)	951, 1079, 1208
MaeII	ACGT	3 cut(s)	53, 482, 1186
MaeIII	GTNAC	3 cut(s)	866, 1137, 1295
MalI	GATC	5 cut(s)	176, 305, 447, 576, 1060
MbiI	CCGCTC	1 cut(s)	1233
MboI	GATC	5 cut(s)	174, 303, 445, 574, 1058
MboII	GAAGA	6 cut(s)	29, 467, 667, 1172, 1255, 1342
MfeI	CAATTG	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	7 cut(s)	305, 343, 480, 1015, 1077, 1161, 1171
MroI	TCCGGA	1 cut(s)	1316
MroXI	GAANNNNTTC	1 cut(s)	1334
MseI	TTAA	5 cut(s)	60, 522, 899, 990, 1224
MslI	CAYNNNNRTG	1 cut(s)	944
MspI	CCGG	3 cut(s)	207, 915, 1317
MspR9I	CCNGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	700
NdeII	GATC	5 cut(s)	174, 303, 445, 574, 1058
NlaIII	CATG	6 cut(s)	148, 379, 416, 445, 801, 874
NlaIV	GGNNCC	3 cut(s)	331, 647, 895
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	866, 1295
NspI	RCATGY	2 cut(s)	416, 801
NspV	TTCGAA	1 cut(s)	832
OliI	CACNNNNGTG	1 cut(s)	944
PciI	ACATGT	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	5 cut(s)	44, 47, 50, 53, 1054
PctI	GAATGC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	1334
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	863
PkrI	GCNGC	6 cut(s)	7, 31, 154, 408, 627, 702
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	990
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	3 cut(s)	331, 647, 895
PspPI	GGNCC	2 cut(s)	330, 849
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	4 cut(s)	728, 775, 930, 1289
RsaNI	GTAC	4 cut(s)	727, 774, 929, 1288
RseI	CAYNNNNRTG	1 cut(s)	944
SaqAI	TTAA	5 cut(s)	60, 522, 899, 990, 1224
SatI	GCNGC	6 cut(s)	6, 30, 153, 407, 626, 701
Sau3AI	GATC	5 cut(s)	174, 303, 445, 574, 1058
Sau96I	GGNCC	2 cut(s)	330, 849
ScaI	AGTACT	1 cut(s)	1289
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	82, 793, 816
SfuI	TTCGAA	1 cut(s)	832
SinI	GGWCC	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	1 cut(s)	1155
SmoI	CTYRAG	1 cut(s)	1155
SsiI	CCGC	6 cut(s)	5, 29, 153, 406, 793, 1233
SspMI	CTAG	3 cut(s)	951, 1079, 1208
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	685, 1179
TaiI	ACGT	3 cut(s)	56, 485, 1189
TaqI	TCGA	5 cut(s)	138, 159, 680, 832, 1328
TatI	WGTACW	4 cut(s)	726, 773, 928, 1287
TauI	GCSGC	4 cut(s)	8, 32, 155, 409
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	5 cut(s)	60, 522, 899, 990, 1224
Tru9I	TTAA	5 cut(s)	60, 522, 899, 990, 1224
TscAI	CASTG	4 cut(s)	360, 776, 946, 981
TseFI	GTSAC	2 cut(s)	866, 1295
TseI	GCWGC	2 cut(s)	625, 700
Tsp45I	GTSAC	2 cut(s)	866, 1295
TspDTI	ATGAA	3 cut(s)	564, 576, 1232
TspRI	CASTG	4 cut(s)	360, 776, 946, 981
Tth111I	GACNNNGTC	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	330
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	5 cut(s)	64, 488, 552, 1009, 1145
XceI	RCATGY	2 cut(s)	416, 801
XmnI	GAANNNNTTC	1 cut(s)	1334
XspI	CTAG	3 cut(s)	951, 1079, 1208
ZraI	GACGTC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	1289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.