Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Reverse (-)

7536597 .. 7537225

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0087300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGGGGAATGGGGAAGACAACTCTTTCCCAACTAGTCTTCAATGACGAAATGGCAAAAAGTTTCTTCTTGGATGATGTTTGGAGTCCAAACCTTCGTCAGTGGGAAGACTTGATCAAACCTTTACGTAATGGTGCCAGGGGTAGTAGAATACTGGTGACCACACGAAAGGAGGAGGTTGCTACTATGATGAAAGCAACCACTCAAATGATACATTTGAAGCAGTTGAGTGAAGAATTTTGTTTGTCATTGTTCTATTATCATGCAGGCATGGACATAAGTAGTAAGTCTAAAATGTTTCAAAACACTGGTCAAGAGATCGTAAAAAAGTGTGATGGCTTGCTTCTTGCTGCAAAAACATTAGGTAGCCTCATGCACGACAAGAAAACAATTAAAGAGTGCAAAGATGTTTTGAATAGTAAGTTATGGGAGCTAGAAGAGATTGAAACACATGTTTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

7.73

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	22 - 90	8.2e-12	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	5 cut(s)	43, 220, 302, 415, 446
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AsuHPI	GGTGA	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	3 cut(s)	23, 31, 114
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	139
BclI	TGATCA	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 434
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	139
BpiI	GAAGAC	3 cut(s)	23, 31, 114
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	159, 313
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	159, 313
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	114, 318
BspLI	GGNNCC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	159, 313
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	114, 318
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	432
BstBAI	YACGTR	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	268, 341
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	117, 321
BstMBI	GATC	2 cut(s)	114, 318
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	137
BstSNI	TACGTA	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	3 cut(s)	23, 31, 114
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	107, 306
Cac8I	GCNNGC	2 cut(s)	268, 341
CviAII	CATG	4 cut(s)	263, 271, 373, 452
CviJI	RGCY	3 cut(s)	339, 369, 433
CviKI_1	RGCY	3 cut(s)	339, 369, 433
DpnI	GATC	2 cut(s)	116, 320
DpnII	GATC	2 cut(s)	114, 318
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco105I	TACGTA	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	137
FaeI	CATG	4 cut(s)	266, 274, 376, 455
FaiI	YATR	7 cut(s)	188, 264, 272, 278, 374, 427, 453
FatI	CATG	4 cut(s)	262, 270, 372, 451
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	35, 434
GluI	GCNGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	266, 274, 376, 455
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	266, 353, 376, 402
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	266, 274, 376, 455
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	114, 318
LmnI	GCTCC	1 cut(s)	430
LpnPI	CCDG	5 cut(s)	124, 140, 151, 252, 294
Lsp1109I	GCAGC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	35, 434
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	116, 320
MboI	GATC	2 cut(s)	114, 318
MboII	GAAGA	6 cut(s)	28, 31, 58, 119, 245, 449
MluCI	AATT	2 cut(s)	236, 390
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	166, 169, 380
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	114, 318
NlaIII	CATG	4 cut(s)	266, 274, 376, 455
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	455
PciI	ACATGT	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
Ppu21I	YACGTR	1 cut(s)	128
PscI	ACATGT	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	114, 318
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	6 cut(s)	96, 124, 130, 180, 367, 435
SmiMI	CAYNNNNRTG	1 cut(s)	206
SnaBI	TACGTA	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	2 cut(s)	236, 390
SspMI	CTAG	2 cut(s)	35, 434
StyD4I	CCNGG	1 cut(s)	137
TaiI	ACGT	1 cut(s)	130
TasI	AATT	2 cut(s)	236, 390
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	107, 313
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	107, 313
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	2 cut(s)	35, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.