Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Reverse (-)

6608164 .. 6613727

Gene Structure 5564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCCCCGACAAGGGAGCTTGCACTTCAGATTGATCAGCAGTTCCAAGCTGTTGGGCCTGGCATTGGCCCCAAGTCTGTAGCGCTTGTTGGAGGAGAGTGTGAGGTGCAACAATCTACTGTTCTTGCAAAGCGGCCGCATATTATTGTTTTAGATAAGGCAGACAGGTTGCTTGGTGAGGAGTTTCAGAAAACAACAAATGAAATTCTGAAGGTCATTCCTCATGGTGGTGAACGGAGAACATATTTATTTTCTGCTACTATGACCAACAAGGTCAAGAAGGTGGTAAGGGCTGGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCTAAGTATTCTACGGTTGAAATGCTACAGCAGCAAATGATGAGTACACCAGTGCAGTACAAGGGATGTTATCTCGTATATCTTCTTAAGAAGTGGCAACGCACTGACCAAAAAAAGAAGAAGTGCCAACGCAGAGCAATGATGTTTGCTGAAAAATGCGCAGAAACACCCTTTTTGGCTTGTATGCTTCAAAATCTTGGAATCCAAGCCATCCCCCTTCATGGTAAAATGAGCCAGTCGGAAAGAGTTGGAGCCTTAAATGTGTTCAAAGCTGGACAGAATAACGTATTTCTTTGCACTAATTTGCCGAGTAGAGGATTTGATGTCCCATCAGTGGATATGGTTATCAATTATAATATGCCCGAGAATCCTAAGGTTAGGCTTGCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

240

Amino Acids

26.82

Weight (kDa)

9.7

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	45 - 94	5.5e-06	DEAD/DEAH box helicase
Helicase_C	PF00271	148 - 234	1.2e-17	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
Acc16I	TGCGCA	1 cut(s)	487
AciI	CCGC	2 cut(s)	133, 137
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	2 cut(s)	11, 230
AfaI	GTAC	2 cut(s)	373, 386
AfeI	AGCGCT	1 cut(s)	84
AfiI	CCNNNNNNNGG	7 cut(s)	12, 13, 65, 227, 548, 641, 661
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	320, 347, 518, 595
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	19, 50, 599
AluI	AGCT	3 cut(s)	19, 50, 599
Ama87I	CYCGRG	1 cut(s)	689
Aor51HI	AGCGCT	1 cut(s)	84
AoxI	GGCC	3 cut(s)	56, 67, 134
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	2 cut(s)	85, 488
AspS9I	GGNCC	2 cut(s)	56, 68
AsuHPI	GGTGA	2 cut(s)	188, 242
AvaI	CYCGRG	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	699
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	545, 664
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	34
BfaI	CTAG	1 cut(s)	718
BfmI	CTRYAG	2 cut(s)	78, 353
BfoI	RGCGCY	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	3 cut(s)	134, 137, 359
BlsI	GCNGC	3 cut(s)	135, 138, 360
Bme1390I	CCNGG	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	56, 68
BmiI	GGNNCC	3 cut(s)	70, 305, 580
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 13, 65, 227, 548, 641, 661
Bse1I	ACTGG	2 cut(s)	377, 562
Bse21I	CCTNAGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	398, 537
BseLI	CCNNNNNNNGG	7 cut(s)	12, 13, 65, 227, 548, 641, 661
BseMI	GCAATG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	377, 562
BseRI	GAGGAG	2 cut(s)	108, 194
BseX3I	CGGCCG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	58, 69, 136
BsiEI	CGRYCG	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	7 cut(s)	12, 13, 65, 227, 548, 641, 661
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	3 cut(s)	58, 69, 136
BsoBI	CYCGRG	1 cut(s)	689
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	133, 137
BspANI	GGCC	3 cut(s)	58, 69, 136
BspLI	GGNNCC	3 cut(s)	70, 305, 580
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	377, 562
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	121, 343
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	21, 711
BstDEI	CTNAG	3 cut(s)	299, 330, 699
BstF5I	GGATG	2 cut(s)	398, 537
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	85, 488
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	78, 353
BstV1I	GCAGC	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstZI	CGGCCG	1 cut(s)	134
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	3 cut(s)	58, 69, 136
BtsCI	GGATG	2 cut(s)	398, 537
BtsIMutI	CAGTG	3 cut(s)	384, 429, 666
Cac8I	GCNNGC	2 cut(s)	21, 711
CciNI	GCGGCCGC	1 cut(s)	134
CfoI	GCGC	2 cut(s)	85, 488
Cfr13I	GGNCC	2 cut(s)	56, 68
Csp6I	GTAC	2 cut(s)	372, 385
CviAII	CATG	2 cut(s)	224, 548
CviQI	GTAC	2 cut(s)	372, 385
DdeI	CTNAG	3 cut(s)	299, 330, 699
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	134
EagI	CGGCCG	1 cut(s)	134
EclXI	CGGCCG	1 cut(s)	134
Eco47III	AGCGCT	1 cut(s)	84
Eco52I	CGGCCG	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	11, 230
Eco81I	CCTNAGG	1 cut(s)	699
Eco88I	CYCGRG	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	2 cut(s)	227, 551
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	2 cut(s)	223, 547
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	3 cut(s)	134, 137, 359
FokI	GGATG	2 cut(s)	405, 524
Fsp4HI	GCNGC	3 cut(s)	134, 137, 359
FspBI	CTAG	1 cut(s)	718
FspI	TGCGCA	1 cut(s)	487
GlaI	GCGC	2 cut(s)	84, 487
GluI	GCNGC	3 cut(s)	134, 137, 359
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	3 cut(s)	58, 69, 136
HhaI	GCGC	2 cut(s)	85, 488
Hin1II	CATG	2 cut(s)	227, 551
Hin6I	GCGC	2 cut(s)	83, 486
HinP1I	GCGC	2 cut(s)	83, 486
HinfI	GANTC	2 cut(s)	528, 694
HphI	GGTGA	2 cut(s)	188, 242
Hpy166II	GTNNAC	2 cut(s)	233, 374
Hpy188I	TCNGA	4 cut(s)	30, 189, 210, 568
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	2 cut(s)	233, 374
HpyAV	CCTTC	3 cut(s)	205, 274, 554
HpyCH4III	ACNGT	2 cut(s)	121, 343
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	5 cut(s)	23, 109, 128, 382, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	3 cut(s)	299, 330, 699
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	2 cut(s)	227, 551
HspAI	GCGC	2 cut(s)	83, 486
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	16, 578
LpnPI	CCDG	8 cut(s)	45, 72, 151, 279, 321, 390, 575, 585
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	718
MaeII	ACGT	1 cut(s)	612
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	325, 401, 457
MluCI	AATT	3 cut(s)	204, 628, 676
MmeI	TCCRAC	3 cut(s)	70, 546, 556
MnlI	CCTC	5 cut(s)	86, 97, 172, 231, 635
MseI	TTAA	2 cut(s)	414, 584
MslI	CAYNNNNRTG	1 cut(s)	228
MspCI	CTTAAG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	227, 551
NlaIV	GGNNCC	3 cut(s)	70, 305, 580
NmeAIII	GCCGAG	1 cut(s)	660
NotI	GCGGCCGC	1 cut(s)	134
NsbI	TGCGCA	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	528, 694
PkrI	GCNGC	3 cut(s)	135, 138, 360
PsiI	TTATAA	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	70, 305, 580
PspPI	GGNCC	2 cut(s)	56, 68
RsaI	GTAC	2 cut(s)	373, 386
RsaNI	GTAC	2 cut(s)	372, 385
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	414, 584
SatI	GCNGC	3 cut(s)	134, 137, 359
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	2 cut(s)	56, 68
ScrFI	CCNGG	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	2 cut(s)	78, 353
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	204, 628, 676
SsiI	CCGC	2 cut(s)	133, 137
SspMI	CTAG	1 cut(s)	718
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	121, 343
TaiI	ACGT	1 cut(s)	615
TasI	AATT	3 cut(s)	204, 628, 676
TatI	WGTACW	2 cut(s)	371, 384
TauI	GCSGC	2 cut(s)	136, 139
TfiI	GAWTC	2 cut(s)	528, 694
Tru1I	TTAA	2 cut(s)	414, 584
Tru9I	TTAA	2 cut(s)	414, 584
TscAI	CASTG	3 cut(s)	384, 436, 666
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	216, 536
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	3 cut(s)	384, 436, 666
Vha464I	CTTAAG	1 cut(s)	413
XapI	RAATTY	1 cut(s)	204
XspI	CTAG	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.