Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Reverse (-)

9436479 .. 9441916

Gene Structure 5438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15190.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCCTCCGACGAACAAGACGGCGAGGTGAAGACCTTCAAGAGCTTGGGGCTCTGCGACAAATTGGTCGAGGCAGTAGCCAAGCTGAACTGGCAAAACCCTACCCCTATTCAAGTCGAAGCAATCCCTCATGCCCTAGAAGGAAAGGACTTGATTGGACTTGCCCAAACCGGGTCGGGTAAAACCGCAGCTTTCGCCCTTCCGATATTGCAAGCTCTGATTGATTCTCCCCATGCATTTTTCGCTTGTGTTTTGGCCCCAACTAGGGAGCTTGCAATTCAGATATCGGAGCAGTTTGAAGCTTTGGGGTATGAGTTTGGTGCCAAGTCAGCAGTGCTTGTTGGAGGAGTGGACATGGTCCAACAGACTGTTATGCTTGCAAAGCAGCCACACATTATTGTTGCTACACCTGGACGCCTCATGGATCATGTATCGAACACAAAAGGATTTTCTCTTCGCGCATTGAAGTATTTGGTTTTAGATGAGGCGGACAGATTGCTTAATGAGGACTTTGAAAAGACACTTGATGACATTCTGAAAGTCATTCCTCGTGAACGGAGAACATATTTGTTTTCTGCTACCATGACTAAAAAGGTCAAGAAGCTGCAAAGGGCTTGTCTAAGGAACCCTGTGAAGATTGAAGTAGCATCTAAATATTCTACCGTTGACACGCTAAAGCAGCAGTATCGTTTTATACCAGCCCCGCACAAGGACTGCTATCTCGTATATATTCTGACCGAGAAGTCTCAATGTACAACTATGGTCTTTACTCGTACATGTGATGCAACACTCCTATTGGCTTCAATGCTTCGAAATCTTGGCATAAGAGCCACCCCTATTAGTGGTCATATGAGCCAGTCAAAAAGACTCGGTGCCTTAAATATGTTTAAAGCTGGACAGTGTAATGTACTTATCTGCACTGATGTGGCAAGTAGAGGATTGGATATCCCATCAGTGGATATGGTTATTAATTATGATATTCCCTCAAATTCTAAGGATTATATTCATCGAGTGGGAAGAACTGCTCGTGCTGGACGGTCTGGGGTTGCAATCTCGTTAGTGAATCAGTATGAGTTGGAGTGGTATATACAAATAGAAAAGCTTATCGGCAAGAAGTTACCTGAGTTTCCTGCTCAAGAAGAGGAGGTCCTTCAATTTCTAGAACGTGTCACAGAGGCCAAAAGATTGGCCACCTCGAAATTAAAAGAAGGGGGAAGCAAAAAGAGGAAGGGGAGAGGAAACGAAGGTGAGGACGATGTGGACATGGAAAAGTTTCTAGGTCACAAGGATGGCAAGTCCAAAAAATTCAGAAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

440

Amino Acids

48.94

Weight (kDa)

9.16

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	35 - 201	1.6e-47	DEAD/DEAH box helicase
ResIII	PF04851	54 - 194	1.3e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	240 - 332	3.4e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	65, 742
AccB1I	GGYRCC	2 cut(s)	320, 872
AccII	CGCG	1 cut(s)	459
AciI	CCGC	3 cut(s)	186, 488, 704
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	1 cut(s)	1188
AcsI	RAATTY	2 cut(s)	988, 1304
AcyI	GRCGYC	1 cut(s)	415
AfaI	GTAC	3 cut(s)	754, 775, 909
AfiI	CCNNNNNNNGG	6 cut(s)	171, 264, 265, 709, 842, 955
AflIII	ACRYGT	2 cut(s)	776, 1165
AgsI	TTSAA	8 cut(s)	40, 113, 299, 466, 515, 641, 804, 1154
AjnI	CCWGG	1 cut(s)	409
AleI	CACNNNNGTG	1 cut(s)	923
AluBI	AGCT	9 cut(s)	45, 85, 191, 215, 271, 302, 604, 893, 1102
AluI	AGCT	9 cut(s)	45, 85, 191, 215, 271, 302, 604, 893, 1102
Alw26I	GTCTC	1 cut(s)	750
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	4 cut(s)	3, 255, 1176, 1188
ApeKI	GCWGC	4 cut(s)	188, 385, 604, 679
ApoI	RAATTY	2 cut(s)	988, 1304
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	2 cut(s)	35, 1272
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	3 cut(s)	256, 358, 1147
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	40, 1259
AsuII	TTCGAA	1 cut(s)	811
AvaII	GGWCC	2 cut(s)	358, 1147
BalI	TGGCCA	1 cut(s)	1190
BanI	GGYRCC	2 cut(s)	320, 872
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	2 cut(s)	549, 1026
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	200, 397, 591, 691
BccI	CCATC	2 cut(s)	958, 1283
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	4 cut(s)	137, 264, 1160, 1277
BisI	GCNGC	4 cut(s)	189, 386, 605, 680
BlsI	GCNGC	4 cut(s)	190, 387, 606, 681
Bme1390I	CCNGG	2 cut(s)	172, 411
Bme18I	GGWCC	2 cut(s)	358, 1147
BmgT120I	GGNCC	3 cut(s)	256, 358, 1147
BmiI	GGNNCC	4 cut(s)	258, 322, 626, 874
BmrFI	CCNGG	2 cut(s)	172, 411
BmsI	GCATC	2 cut(s)	656, 772
BpiI	GAAGAC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	811
BpuEI	CTTGAG	1 cut(s)	1119
BpuMI	CCSGG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 264, 265, 709, 842, 955
Bse1I	ACTGG	2 cut(s)	95, 856
BseBI	CCWGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	1294
BseLI	CCNNNNNNNGG	6 cut(s)	171, 264, 265, 709, 842, 955
BseMII	CTCAG	1 cut(s)	1113
BseNI	ACTGG	2 cut(s)	95, 856
BseRI	GAGGAG	2 cut(s)	360, 1157
BseXI	GCAGC	4 cut(s)	200, 397, 591, 691
BsgI	GTGCAG	1 cut(s)	901
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	4 cut(s)	5, 257, 1178, 1190
BshNI	GGYRCC	2 cut(s)	320, 872
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	6 cut(s)	171, 264, 265, 709, 842, 955
BsmAI	GTCTC	1 cut(s)	750
BsnI	GGCC	4 cut(s)	5, 257, 1178, 1190
Bsp119I	TTCGAA	1 cut(s)	811
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	752
Bsp143I	GATC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	186, 488, 704
BspANI	GGCC	4 cut(s)	5, 257, 1178, 1190
BspCNI	CTCAG	1 cut(s)	1114
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	4 cut(s)	258, 322, 626, 874
BspPI	GGATC	1 cut(s)	432
BspT104I	TTCGAA	1 cut(s)	811
BspT107I	GGYRCC	2 cut(s)	320, 872
BsrGI	TGTACA	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	95, 856
BssMI	GATC	1 cut(s)	424
BssNI	GRCGYC	1 cut(s)	415
BssSI	CACGAG	2 cut(s)	549, 1026
Bst2BI	CACGAG	2 cut(s)	549, 1026
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	4 cut(s)	370, 664, 900, 1038
Bst6I	CTCTTC	2 cut(s)	459, 1134
BstACI	GRCGYC	1 cut(s)	415
BstAUI	TGTACA	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	811
BstC8I	GCNNGC	3 cut(s)	213, 273, 378
BstDEI	CTNAG	3 cut(s)	620, 993, 1122
BstF5I	GGATG	1 cut(s)	1294
BstFNI	CGCG	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 194, 242, 329, 382, 679
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	2 cut(s)	170, 409
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	200, 397, 591, 691
BstV2I	GAAGAC	1 cut(s)	38
BstXI	CCANNNNNNTGG	1 cut(s)	1186
BsuRI	GGCC	4 cut(s)	5, 257, 1178, 1190
BtsCI	GGATG	1 cut(s)	1294
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	4 cut(s)	339, 905, 918, 960
Cac8I	GCNNGC	3 cut(s)	213, 273, 378
CfoI	GCGC	1 cut(s)	461
Cfr13I	GGNCC	3 cut(s)	256, 358, 1147
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	753, 774, 908
CviAII	CATG	8 cut(s)	131, 233, 355, 421, 428, 583, 777, 1264
CviQI	GTAC	3 cut(s)	753, 774, 908
DdeI	CTNAG	3 cut(s)	620, 993, 1122
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraI	TTTAAA	1 cut(s)	889
DrdI	GACNNNNNNGTC	2 cut(s)	65, 742
DseDI	GACNNNNNNGTC	2 cut(s)	65, 742
EaeI	YGGCCR	1 cut(s)	1188
Eam1104I	CTCTTC	2 cut(s)	459, 1134
EarI	CTCTTC	2 cut(s)	459, 1134
EciI	GGCGGA	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	54
Eco32I	GATATC	2 cut(s)	285, 946
Eco47I	GGWCC	2 cut(s)	358, 1147
EcoO109I	RGGNCCY	1 cut(s)	1147
EcoRII	CCWGG	1 cut(s)	409
EcoRV	GATATC	2 cut(s)	285, 946
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	8 cut(s)	134, 236, 358, 424, 431, 586, 780, 1267
FatI	CATG	8 cut(s)	130, 232, 354, 420, 427, 582, 776, 1263
FauI	CCCGC	1 cut(s)	711
FauNDI	CATATG	1 cut(s)	849
Fnu4HI	GCNGC	4 cut(s)	189, 386, 605, 680
FokI	GGATG	1 cut(s)	1301
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	4 cut(s)	189, 386, 605, 680
FspBI	CTAG	4 cut(s)	137, 264, 1160, 1277
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	4 cut(s)	189, 386, 605, 680
HaeIII	GGCC	4 cut(s)	5, 257, 1178, 1190
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	461
Hin1I	GRCGYC	1 cut(s)	415
Hin1II	CATG	8 cut(s)	134, 236, 358, 424, 431, 586, 780, 1267
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	2 cut(s)	300, 1100
HinfI	GANTC	3 cut(s)	224, 867, 1063
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	40, 1259
Hpy166II	GTNNAC	4 cut(s)	352, 554, 667, 1261
Hpy188I	TCNGA	8 cut(s)	10, 204, 219, 282, 289, 537, 735, 1310
Hpy188III	TCNNGA	5 cut(s)	40, 551, 598, 1136, 1160
Hpy8I	GTNNAC	4 cut(s)	352, 554, 667, 1261
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	7 cut(s)	46, 134, 209, 1160, 1202, 1222, 1238
HpyCH4III	ACNGT	4 cut(s)	370, 664, 900, 1038
HpyCH4IV	ACGT	1 cut(s)	1165
HpyCH4V	TGCA	8 cut(s)	211, 236, 275, 380, 607, 785, 918, 1049
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 194, 242, 329, 382, 679
HpyF3I	CTNAG	3 cut(s)	620, 993, 1122
HpySE526I	ACGT	1 cut(s)	1165
Hsp92I	GRCGYC	1 cut(s)	415
Hsp92II	CATG	8 cut(s)	134, 236, 358, 424, 431, 586, 780, 1267
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	2 cut(s)	268, 289
Lsp1109I	GCAGC	4 cut(s)	200, 397, 591, 691
LweI	GCATC	2 cut(s)	656, 772
MaeI	CTAG	4 cut(s)	137, 264, 1160, 1277
MaeII	ACGT	1 cut(s)	1165
MaeIII	GTNAC	3 cut(s)	1116, 1168, 1280
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	5 cut(s)	43, 446, 646, 1029, 1151
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	1190
MluCI	AATT	7 cut(s)	62, 276, 970, 988, 1154, 1199, 1304
MluNI	TGGCCA	1 cut(s)	1190
MlyI	GAGTC	1 cut(s)	861
MmeI	TCCRAC	4 cut(s)	33, 322, 385, 1056
Mox20I	TGGCCA	1 cut(s)	1190
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	2 cut(s)	35, 1272
MscI	TGGCCA	1 cut(s)	1190
MseI	TTAA	5 cut(s)	501, 878, 888, 969, 1202
MslI	CAYNNNNRTG	2 cut(s)	923, 1287
Msp20I	TGGCCA	1 cut(s)	1190
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	172, 411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	6 cut(s)	91, 194, 242, 329, 382, 679
NciI	CCSGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	849
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	8 cut(s)	134, 236, 358, 424, 431, 586, 780, 1267
NlaIV	GGNNCC	4 cut(s)	258, 322, 626, 874
NmuCI	GTSAC	2 cut(s)	1168, 1280
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	780
NspV	TTCGAA	1 cut(s)	811
OliI	CACNNNNGTG	1 cut(s)	923
PciI	ACATGT	1 cut(s)	776
PdmI	GAANNNNTTC	2 cut(s)	35, 1272
PfeI	GAWTC	2 cut(s)	224, 1063
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	190, 387, 606, 681
PleI	GAGTC	1 cut(s)	861
PpsI	GAGTC	1 cut(s)	861
PpuMI	RGGWCCY	1 cut(s)	1147
PscI	ACATGT	1 cut(s)	776
PshBI	ATTAAT	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	1147
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	258, 322, 626, 874
PspPI	GGNCC	3 cut(s)	256, 358, 1147
PspPPI	RGGWCCY	1 cut(s)	1147
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	3 cut(s)	754, 775, 909
RsaNI	GTAC	3 cut(s)	753, 774, 908
RseI	CAYNNNNRTG	2 cut(s)	923, 1287
SaqAI	TTAA	5 cut(s)	501, 878, 888, 969, 1202
SatI	GCNGC	4 cut(s)	189, 386, 605, 680
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	3 cut(s)	256, 358, 1147
SchI	GAGTC	1 cut(s)	861
ScrFI	CCNGG	2 cut(s)	172, 411
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	656, 772
SfuI	TTCGAA	1 cut(s)	811
SinI	GGWCC	2 cut(s)	358, 1147
SmiMI	CAYNNNNRTG	2 cut(s)	923, 1287
SmlI	CTYRAG	1 cut(s)	1134
SmoI	CTYRAG	1 cut(s)	1134
Sse9I	AATT	7 cut(s)	62, 276, 970, 988, 1154, 1199, 1304
SsiI	CCGC	3 cut(s)	186, 488, 704
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	4 cut(s)	137, 264, 1160, 1277
StyD4I	CCNGG	2 cut(s)	170, 409
TaaI	ACNGT	4 cut(s)	370, 664, 900, 1038
TaiI	ACGT	1 cut(s)	1168
TaqI	TCGA	6 cut(s)	69, 117, 434, 811, 1009, 1196
TaqII	GACCGA	1 cut(s)	752
TasI	AATT	7 cut(s)	62, 276, 970, 988, 1154, 1199, 1304
TatI	WGTACW	2 cut(s)	752, 907
TfiI	GAWTC	2 cut(s)	224, 1063
Tru1I	TTAA	5 cut(s)	501, 878, 888, 969, 1202
Tru9I	TTAA	5 cut(s)	501, 878, 888, 969, 1202
TscAI	CASTG	4 cut(s)	339, 905, 925, 960
TseFI	GTSAC	2 cut(s)	1168, 1280
TseI	GCWGC	4 cut(s)	188, 385, 604, 679
Tsp45I	GTSAC	2 cut(s)	1168, 1280
TspDTI	ATGAA	1 cut(s)	995
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	4 cut(s)	339, 905, 925, 960
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	358, 1147
VspI	ATTAAT	1 cut(s)	969
XapI	RAATTY	2 cut(s)	988, 1304
XbaI	TCTAGA	1 cut(s)	1159
XceI	RCATGY	1 cut(s)	780
XmnI	GAANNNNTTC	2 cut(s)	35, 1272
XspI	CTAG	4 cut(s)	137, 264, 1160, 1277
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.