Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Forward (+)

75793911 .. 75795808

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCGCCGTCGAAAGAGAGGAGGAGGAGCTTAACACCCTTAAGCAGCAGTTTTGTTTTCTGCTGGACAAGTACAAGGATTGCTATCTGGTATATATTCTTACTGAGAAGCGCCAATCTACAGCAATTGTTTTTGCTCGTTCACCAGATGTTTGCAGATTGGCTTTAATGCTTCAATATCTTGGCATAAGGGCTATCCCAATTACTGGACATATGGAAGAGTCGCAGAGACTTCTTGCCTCAAGTATGTTCAAAGCTGGACAGTTTAATGTACTTATCTGCACGGATATGGCAATTAGAGATTTGGATATTCCATCAGTGGATATTATTATTAGTTATGACATCCCCTCAAATCCTCAGTATGAATTGGAGTGGTATACGAAGATAGAGAAGCTTATTGGCAAAGAGTTACCTCAATTTCCTGCTCAAGAAGAGAAAGTCCTACAATTTCTTGAACCTGTCAGAGAAGCCAAAATATTGGCCGAATCAAAAACAAGCGGAAGTGGAGACAAGAAAGAAAGGATGGTGAAGAGGATTTTGAAAAGTCGGCGACGAAGCCAAGGAAATGCCTTGCAAGCACAGGTTCCACAGGGCCTGTATCAAAAAGTGGATGGCGATGAGCGCTCTCTGCCCACAGAGTCAGAAGAGGAAGAAAACAGTGATGATGATGATGATATTAGGTCTATTCTTAATGGTGCTAACTATGAAATTGAAGATCTAGGAGGTGAATGGGAAACAAGCACCGTCTATGATGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

254

Amino Acids

29.04

Weight (kDa)

4.68

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	29 - 120	2.5e-14	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	377
AciI	CCGC	2 cut(s)	6, 498
AcoI	YGGCCR	2 cut(s)	3, 480
AfaI	GTAC	2 cut(s)	74, 273
AfeI	AGCGCT	1 cut(s)	623
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	176, 253, 455, 541, 713
AluBI	AGCT	3 cut(s)	31, 257, 394
AluI	AGCT	3 cut(s)	31, 257, 394
Alw26I	GTCTC	2 cut(s)	223, 501
AlwNI	CAGNNNCTG	1 cut(s)	595
Aor51HI	AGCGCT	1 cut(s)	623
AoxI	GGCC	3 cut(s)	3, 480, 592
ApeKI	GCWGC	1 cut(s)	46
AspLEI	GCGC	2 cut(s)	114, 624
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	3 cut(s)	135, 538, 737
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	322, 517, 605
BcoDI	GTCTC	2 cut(s)	223, 501
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	2 cut(s)	115, 625
BfrI	CTTAAG	1 cut(s)	41
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	2 cut(s)	6, 47
BlsI	GCNGC	2 cut(s)	7, 48
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	1 cut(s)	585
BpuEI	CTTGAG	2 cut(s)	226, 411
Bsa29I	ATCGAT	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	757
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	3 cut(s)	342, 528, 616
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	96, 371
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	35, 38, 41
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	3 cut(s)	5, 482, 594
BshVI	ATCGAT	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	223, 501
BsnI	GGCC	3 cut(s)	5, 482, 594
Bsp143I	GATC	2 cut(s)	715, 754
BspACI	CCGC	2 cut(s)	6, 498
BspANI	GGCC	3 cut(s)	5, 482, 594
BspCNI	CTCAG	2 cut(s)	97, 370
BspDI	ATCGAT	1 cut(s)	757
BspLI	GGNNCC	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	2 cut(s)	715, 754
BssNAI	GTATAC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	559
Bst1107I	GTATAC	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	264, 659, 745
Bst6I	CTCTTC	4 cut(s)	213, 426, 524, 639
BstAFI	CTTAAG	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	2 cut(s)	105, 357
BstF5I	GGATG	3 cut(s)	342, 528, 616
BstH2I	RGCGCY	2 cut(s)	115, 625
BstHHI	GCGC	2 cut(s)	114, 624
BstKTI	GATC	2 cut(s)	718, 757
BstMAI	GTCTC	2 cut(s)	223, 501
BstMBI	GATC	2 cut(s)	715, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	575, 621, 628
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	715
BstZ17I	GTATAC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	5, 482, 594
BsuTUI	ATCGAT	1 cut(s)	757
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	3 cut(s)	342, 528, 616
BtsIMutI	CAGTG	2 cut(s)	324, 664
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	595
CfoI	GCGC	2 cut(s)	114, 624
Cfr13I	GGNCC	1 cut(s)	592
ClaI	ATCGAT	1 cut(s)	757
Csp6I	GTAC	2 cut(s)	73, 272
CviQI	GTAC	2 cut(s)	73, 272
DdeI	CTNAG	2 cut(s)	105, 357
DpnI	GATC	2 cut(s)	717, 756
DpnII	GATC	2 cut(s)	715, 754
EaeI	YGGCCR	2 cut(s)	3, 480
Eam1104I	CTCTTC	4 cut(s)	213, 426, 524, 639
EarI	CTCTTC	4 cut(s)	213, 426, 524, 639
Eco130I	CCWWGG	1 cut(s)	559
Eco47III	AGCGCT	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	559
FauNDI	CATATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	6, 47
FokI	GGATG	3 cut(s)	329, 535, 623
Fsp4HI	GCNGC	2 cut(s)	6, 47
FspBI	CTAG	1 cut(s)	719
GlaI	GCGC	2 cut(s)	113, 623
GluI	GCNGC	2 cut(s)	6, 47
HaeII	RGCGCY	2 cut(s)	115, 625
HaeIII	GGCC	3 cut(s)	5, 482, 594
HhaI	GCGC	2 cut(s)	114, 624
Hin6I	GCGC	2 cut(s)	112, 622
HinP1I	GCGC	2 cut(s)	112, 622
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	221, 485, 638
HphI	GGTGA	3 cut(s)	135, 538, 737
Hpy166II	GTNNAC	2 cut(s)	143, 378
Hpy188I	TCNGA	2 cut(s)	464, 643
Hpy188III	TCNNGA	2 cut(s)	428, 452
Hpy8I	GTNNAC	2 cut(s)	143, 378
Hpy99I	CGWCG	2 cut(s)	14, 555
HpyCH4III	ACNGT	3 cut(s)	264, 659, 745
HpyCH4V	TGCA	3 cut(s)	156, 282, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	575, 621, 628
HpyF3I	CTNAG	2 cut(s)	105, 357
HspAI	GCGC	2 cut(s)	112, 622
Kzo9I	GATC	2 cut(s)	715, 754
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	719
MaeIII	GTNAC	1 cut(s)	408
MalI	GATC	2 cut(s)	717, 756
MboI	GATC	2 cut(s)	715, 754
MboII	GAAGA	7 cut(s)	230, 394, 443, 541, 656, 662, 725
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	715
MluCI	AATT	7 cut(s)	126, 201, 294, 365, 416, 446, 708
MlyI	GAGTC	2 cut(s)	230, 647
MseI	TTAA	5 cut(s)	33, 42, 167, 267, 690
MslI	CAYNNNNRTG	1 cut(s)	287
MspCI	CTTAAG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	575, 621, 628
NdeI	CATATG	1 cut(s)	213
NdeII	GATC	2 cut(s)	715, 754
NlaIV	GGNNCC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	7, 48
PleI	GAGTC	2 cut(s)	229, 646
PpsI	GAGTC	2 cut(s)	229, 646
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	2 cut(s)	74, 273
RsaNI	GTAC	2 cut(s)	73, 272
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	5 cut(s)	33, 42, 167, 267, 690
SatI	GCNGC	2 cut(s)	6, 47
Sau3AI	GATC	2 cut(s)	715, 754
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	2 cut(s)	230, 647
SetI	ASST	8 cut(s)	33, 259, 396, 415, 460, 585, 683, 727
SfcI	CTRYAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	3 cut(s)	41, 241, 426
SmoI	CTYRAG	3 cut(s)	41, 241, 426
Sse9I	AATT	7 cut(s)	126, 201, 294, 365, 416, 446, 708
SsiI	CCGC	2 cut(s)	6, 498
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	1 cut(s)	719
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	3 cut(s)	264, 659, 745
TaqI	TCGA	2 cut(s)	12, 757
TasI	AATT	7 cut(s)	126, 201, 294, 365, 416, 446, 708
TatI	WGTACW	2 cut(s)	72, 271
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	5 cut(s)	33, 42, 167, 267, 690
Tru9I	TTAA	5 cut(s)	33, 42, 167, 267, 690
TscAI	CASTG	2 cut(s)	324, 664
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	378, 720
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	324, 664
Van91I	CCANNNNNTGG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	377
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.