Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Forward (+)

75821302 .. 75824280

Gene Structure 2979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCCGCCGTCGAAAGAGAGGAGGAGCTTAACACCCTTAAGCAGCCGTTTTGTTTTCTGCTGGACAAGTACAAGGATTGCTATCTGGTATATATTCTGACTGAGAAGCGCCAATCTACAGCAGTTGTTTTTGCTCGTTCACCAGATGTTTGCAGATTGGCTTTAATGCTTCAATATCTTGGCATAAGGGCTATCCCAATTACTGGACATATGGAAGAGTCGCAGAGACTTCTTGCCTCAAGTATGTTCAAAGCTGGACAGTTTAATGTACTTATCTGCACGGATATGGCAATTAGAGATTTGGATATTCCATCAGTGGATATTATTATTAGTTATGACATCCCCTCAAATCCTCAGTATTATGGCCATCGAATAGGACGAATTGCTTGTGACGGACGATCTGGAGTTGCAATCTCTCTTGTAAATCAGTATGAATTGGAGTGGTATACGAAGATAGAGAAGCTTATTGGCAAAGAGTTACCTCAATTTCCTGCTCAAGAAGAGAAAGTCCTACAATTTCTTGAACCTGTCAGAGAAGCCAAAATATTGGCCGAATCAAAAACAAGCGGAAGTGGAGACAAGAAAGAAAGGATGGTGAAGAGGATATTGAAAAGCTCTTATGGGAAAGAGATCGAGATGTTCTCCTTGAGAGCTCATGTTTGGAAAACAATCCAAAACCCTGGCTATAACAGAGGCAATAATCAGGGGACGCTTTTGCATGAGGCACTTCATTGGCTAAACGATGCTGAAATCCGTGCTTTTGATTTCGCACATGAGGAGTTGAGGACATTGCGGCTGCCTGATGATGACCAACATGGTATTAGCTTCGGCTCTGTTGTGGTTTTTGAGGGATGCCTGTGTGTATGTGGTCATCTGTGGGATGCTTCTGGCTCTGTCGAATTCTGGGTCATGAGAGAATATGACGTGCATGGCTCGTGGACTAAGCCCTATAAGTTTCTTTACGATTCAGAGGAGAACCTATACATAGATTCCTTGGTTATGGAAGGTATTACAGTTGCCAAGAAATGGTGTGCCGGCCGGACCTGGTTGGTAAAGATTGGTCTTAAACAAGAAACGGAAGTTGGCATGTATATGACTCGAGGCACCTCTGTTAACATGATTCCATATCTGGAGAGTCTACTTTGGATTAACGATGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

388

Amino Acids

44.41

Weight (kDa)

5.6

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	28 - 129	4.7e-18	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1103
AccB7I	CCANNNNNTGG	2 cut(s)	203, 1026
AccI	GTMKAC	2 cut(s)	446, 1138
AciI	CCGC	3 cut(s)	6, 567, 793
AcoI	YGGCCR	4 cut(s)	3, 364, 549, 1036
AcsI	RAATTY	1 cut(s)	899
AfaI	GTAC	2 cut(s)	71, 270
AfiI	CCNNNNNNNGG	2 cut(s)	203, 1026
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	173, 250, 524, 610
AjiI	CACGTC	1 cut(s)	925
AjnI	CCWGG	2 cut(s)	679, 1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	1065, 1097
AluBI	AGCT	6 cut(s)	28, 254, 463, 615, 653, 825
AluI	AGCT	6 cut(s)	28, 254, 463, 615, 653, 825
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	2 cut(s)	220, 570
Ama87I	CYCGRG	1 cut(s)	1098
AoxI	GGCC	4 cut(s)	3, 364, 549, 1036
ApeKI	GCWGC	2 cut(s)	43, 796
ApoI	RAATTY	1 cut(s)	899
ArsI	GACNNNNNNTTYG	2 cut(s)	891, 923
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	1041
AsuHPI	GGTGA	2 cut(s)	132, 607
AvaI	CYCGRG	1 cut(s)	1098
AvaII	GGWCC	1 cut(s)	1041
BalI	TGGCCA	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	1103
BanII	GRGCYC	1 cut(s)	655
BauI	CACGAG	1 cut(s)	934
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	2 cut(s)	55, 783
BccI	CCATC	3 cut(s)	319, 375, 586
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	681, 1045
BcoDI	GTCTC	2 cut(s)	220, 570
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	4 cut(s)	6, 44, 794, 797
BlsI	GCNGC	4 cut(s)	7, 45, 795, 798
Bme1390I	CCNGG	2 cut(s)	681, 1045
Bme18I	GGWCC	1 cut(s)	1041
BmeT110I	CYCGRG	1 cut(s)	1098
BmgBI	CACGTC	1 cut(s)	925
BmgT120I	GGNCC	1 cut(s)	1041
BmiI	GGNNCC	1 cut(s)	1105
BmrFI	CCNGG	2 cut(s)	681, 1045
BmsI	GCATC	3 cut(s)	733, 842, 871
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
BpmI	CTGGAG	2 cut(s)	423, 1151
BpuEI	CTTGAG	3 cut(s)	223, 480, 667
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	679, 993
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 1026
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	788
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	681, 1045
BseDI	CCNNGG	2 cut(s)	679, 993
BseGI	GGATG	4 cut(s)	339, 597, 857, 886
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	203, 1026
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	2 cut(s)	93, 368
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	4 cut(s)	35, 38, 791, 986
BseX3I	CGGCCG	1 cut(s)	1036
BseXI	GCAGC	2 cut(s)	55, 783
BsgI	GTGCAG	1 cut(s)	262
Bsh1285I	CGRYCG	1 cut(s)	1039
BshFI	GGCC	4 cut(s)	5, 366, 551, 1038
BshNI	GGYRCC	1 cut(s)	1103
BsiEI	CGRYCG	1 cut(s)	1039
BsiHKAI	GWGCWC	1 cut(s)	655
BsiHKCI	CYCGRG	1 cut(s)	1098
BsiSI	CCGG	2 cut(s)	1035, 1039
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	2 cut(s)	203, 1026
BsmAI	GTCTC	2 cut(s)	220, 570
BsmFI	GGGAC	1 cut(s)	721
BsnI	GGCC	4 cut(s)	5, 366, 551, 1038
BsoBI	CYCGRG	1 cut(s)	1098
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	2 cut(s)	398, 630
BspACI	CCGC	3 cut(s)	6, 567, 793
BspANI	GGCC	4 cut(s)	5, 366, 551, 1038
BspCNI	CTCAG	2 cut(s)	94, 367
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	1 cut(s)	1105
BspT107I	GGYRCC	1 cut(s)	1103
BspTI	CTTAAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	2 cut(s)	679, 993
BssMI	GATC	2 cut(s)	398, 630
BssNAI	GTATAC	1 cut(s)	447
BssSI	CACGAG	1 cut(s)	934
BssT1I	CCWWGG	1 cut(s)	993
Bst1107I	GTATAC	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	934
Bst2UI	CCWGG	2 cut(s)	681, 1045
Bst4CI	ACNGT	2 cut(s)	261, 1015
Bst6I	CTCTTC	3 cut(s)	210, 495, 593
BstAFI	CTTAAG	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	1036
BstDEI	CTNAG	3 cut(s)	102, 354, 942
BstF5I	GGATG	4 cut(s)	339, 597, 857, 886
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	401, 633
BstMAI	GTCTC	2 cut(s)	220, 570
BstMBI	GATC	2 cut(s)	398, 630
BstMCI	CGRYCG	1 cut(s)	1039
BstNI	CCWGG	2 cut(s)	681, 1045
BstNSI	RCATGY	1 cut(s)	1090
BstSCI	CCNGG	2 cut(s)	679, 1043
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	55, 783
BstXI	CCANNNNNNTGG	2 cut(s)	547, 680
BstZ17I	GTATAC	1 cut(s)	447
BstZI	CGGCCG	1 cut(s)	1036
BsuRI	GGCC	4 cut(s)	5, 366, 551, 1038
BtrI	CACGTC	1 cut(s)	925
BtsCI	GGATG	4 cut(s)	339, 597, 857, 886
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	1036
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	1 cut(s)	1041
CseI	GACGC	1 cut(s)	718
CsiI	ACCWGGT	1 cut(s)	1043
Csp6I	GTAC	2 cut(s)	70, 269
CviAII	CATG	8 cut(s)	656, 719, 773, 815, 910, 929, 1087, 1117
CviQI	GTAC	2 cut(s)	70, 269
DdeI	CTNAG	3 cut(s)	102, 354, 942
DpnI	GATC	2 cut(s)	400, 632
DpnII	GATC	2 cut(s)	398, 630
EaeI	YGGCCR	4 cut(s)	3, 364, 549, 1036
EagI	CGGCCG	1 cut(s)	1036
Eam1104I	CTCTTC	3 cut(s)	210, 495, 593
EarI	CTCTTC	3 cut(s)	210, 495, 593
Ecl136II	GAGCTC	1 cut(s)	653
EclXI	CGGCCG	1 cut(s)	1036
Eco130I	CCWWGG	1 cut(s)	993
Eco24I	GRGCYC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	1041
Eco52I	CGGCCG	1 cut(s)	1036
Eco53kI	GAGCTC	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	1098
EcoICRI	GAGCTC	1 cut(s)	653
EcoRI	GAATTC	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	679, 1043
EcoT14I	CCWWGG	1 cut(s)	993
EcoT38I	GRGCYC	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	993
FaeI	CATG	8 cut(s)	659, 722, 776, 818, 913, 932, 1090, 1120
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	8 cut(s)	655, 718, 772, 814, 909, 928, 1086, 1116
FauNDI	CATATG	1 cut(s)	210
FblI	GTMKAC	2 cut(s)	446, 1138
Fnu4HI	GCNGC	4 cut(s)	6, 44, 794, 797
FokI	GGATG	4 cut(s)	326, 604, 864, 893
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	4 cut(s)	6, 44, 794, 797
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	6, 44, 794, 797
GsuI	CTGGAG	2 cut(s)	423, 1151
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	4 cut(s)	5, 366, 551, 1038
HapII	CCGG	2 cut(s)	1035, 1039
HgaI	GACGC	1 cut(s)	718
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	8 cut(s)	659, 722, 776, 818, 913, 932, 1090, 1120
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	8 cut(s)	218, 554, 965, 989, 1096, 1120, 1135, 1157
HpaI	GTTAAC	1 cut(s)	1114
HpaII	CCGG	2 cut(s)	1035, 1039
HphI	GGTGA	2 cut(s)	132, 607
Hpy166II	GTNNAC	5 cut(s)	140, 447, 939, 1114, 1139
Hpy188I	TCNGA	3 cut(s)	99, 533, 970
Hpy188III	TCNNGA	7 cut(s)	402, 497, 521, 634, 910, 1130, 1161
Hpy8I	GTNNAC	5 cut(s)	140, 447, 939, 1114, 1139
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	998
HpyCH4III	ACNGT	2 cut(s)	261, 1015
HpyCH4IV	ACGT	1 cut(s)	924
HpyCH4V	TGCA	5 cut(s)	153, 279, 410, 718, 928
HpyF3I	CTNAG	3 cut(s)	102, 354, 942
HpySE526I	ACGT	1 cut(s)	924
Hsp92II	CATG	8 cut(s)	659, 722, 776, 818, 913, 932, 1090, 1120
HspAI	GCGC	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	1034
KroNI	GCCGGC	1 cut(s)	1036
KspAI	GTTAAC	1 cut(s)	1114
Kzo9I	GATC	2 cut(s)	398, 630
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	2 cut(s)	55, 783
LweI	GCATC	3 cut(s)	733, 842, 871
MabI	ACCWGGT	1 cut(s)	1043
MaeII	ACGT	1 cut(s)	924
MaeIII	GTNAC	2 cut(s)	389, 477
MalI	GATC	2 cut(s)	400, 632
MboI	GATC	2 cut(s)	398, 630
MboII	GAAGA	4 cut(s)	227, 463, 512, 610
MhlI	GDGCHC	1 cut(s)	655
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	7 cut(s)	198, 291, 381, 434, 485, 515, 899
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	3 cut(s)	227, 1090, 1144
Mox20I	TGGCCA	1 cut(s)	366
MroNI	GCCGGC	1 cut(s)	1034
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	7 cut(s)	30, 39, 164, 264, 1065, 1113, 1149
MslI	CAYNNNNRTG	2 cut(s)	284, 1091
Msp20I	TGGCCA	1 cut(s)	366
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	2 cut(s)	1035, 1039
MspR9I	CCNGG	2 cut(s)	681, 1045
MvaI	CCWGG	2 cut(s)	681, 1045
NaeI	GCCGGC	1 cut(s)	1036
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	2 cut(s)	398, 630
NgoMIV	GCCGGC	1 cut(s)	1034
NlaIII	CATG	8 cut(s)	659, 722, 776, 818, 913, 932, 1090, 1120
NlaIV	GGNNCC	1 cut(s)	1105
NmuCI	GTSAC	1 cut(s)	389
NspI	RCATGY	1 cut(s)	1090
PaeR7I	CTCGAG	1 cut(s)	1098
PagI	TCATGA	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PdiI	GCCGGC	1 cut(s)	1036
PfeI	GAWTC	4 cut(s)	554, 965, 989, 1120
PflMI	CCANNNNNTGG	2 cut(s)	203, 1026
PkrI	GCNGC	4 cut(s)	7, 45, 795, 798
PleI	GAGTC	3 cut(s)	226, 1090, 1143
PpsI	GAGTC	3 cut(s)	226, 1090, 1143
Psp124BI	GAGCTC	1 cut(s)	655
Psp6I	CCWGG	2 cut(s)	679, 1043
PspGI	CCWGG	2 cut(s)	679, 1043
PspN4I	GGNNCC	1 cut(s)	1105
PspPI	GGNCC	1 cut(s)	1041
PspXI	VCTCGAGB	1 cut(s)	1098
RsaI	GTAC	2 cut(s)	71, 270
RsaNI	GTAC	2 cut(s)	70, 269
RseI	CAYNNNNRTG	2 cut(s)	284, 1091
SacI	GAGCTC	1 cut(s)	655
SaqAI	TTAA	7 cut(s)	30, 39, 164, 264, 1065, 1113, 1149
SatI	GCNGC	4 cut(s)	6, 44, 794, 797
Sau3AI	GATC	2 cut(s)	398, 630
Sau96I	GGNCC	1 cut(s)	1041
SchI	GAGTC	3 cut(s)	227, 1090, 1144
ScrFI	CCNGG	2 cut(s)	681, 1045
SduI	GDGCHC	1 cut(s)	655
SexAI	ACCWGGT	1 cut(s)	1043
SfaNI	GCATC	3 cut(s)	733, 842, 871
SfcI	CTRYAG	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	1098
SinI	GGWCC	1 cut(s)	1041
SlaI	CTCGAG	1 cut(s)	1098
SmiMI	CAYNNNNRTG	2 cut(s)	284, 1091
SmlI	CTYRAG	5 cut(s)	38, 238, 495, 646, 1098
SmoI	CTYRAG	5 cut(s)	38, 238, 495, 646, 1098
Sse9I	AATT	7 cut(s)	198, 291, 381, 434, 485, 515, 899
SsiI	CCGC	3 cut(s)	6, 567, 793
SspI	AATATT	1 cut(s)	546
SstI	GAGCTC	1 cut(s)	655
StyD4I	CCNGG	2 cut(s)	679, 1043
StyI	CCWWGG	1 cut(s)	993
TaaI	ACNGT	2 cut(s)	261, 1015
TaiI	ACGT	1 cut(s)	927
TaqI	TCGA	5 cut(s)	12, 370, 633, 897, 1099
TasI	AATT	7 cut(s)	198, 291, 381, 434, 485, 515, 899
TatI	WGTACW	2 cut(s)	69, 268
TauI	GCSGC	2 cut(s)	8, 796
TfiI	GAWTC	4 cut(s)	554, 965, 989, 1120
Tru1I	TTAA	7 cut(s)	30, 39, 164, 264, 1065, 1113, 1149
Tru9I	TTAA	7 cut(s)	30, 39, 164, 264, 1065, 1113, 1149
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	43, 796
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	447, 719
TspGWI	ACGGA	4 cut(s)	296, 408, 743, 1091
TspRI	CASTG	1 cut(s)	321
Van91I	CCANNNNNTGG	2 cut(s)	203, 1026
Vha464I	CTTAAG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	1041
XapI	RAATTY	1 cut(s)	899
XceI	RCATGY	1 cut(s)	1090
XhoI	CTCGAG	1 cut(s)	1098
XmiI	GTMKAC	2 cut(s)	446, 1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.