Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005279

Physical Location & Seq

Genomic Coordinates Reverse (-)

64070040 .. 64070441

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0510100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCGGGTATTCCGGTGCAGCAAACTGACGAGGATTGTGGCATATTCATCATGCGGTTCATGAAAGAAATAGTTGAGGATAGGAATCTGGAATTTGCATCAAAGTGGCAGCGGCGATCATCCAAGGAACTAGTTTACACCCAAAAGGATCTTGATGCTGTGAGGACAGAGTGGGCTAAGTTTGTCATGAAGTATCACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

67

Amino Acids

8.05

Weight (kDa)

6.56

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	3 - 60	4.3e-06	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60990
fragaria_vesca	FvH4_3g15190 FvH4_3g15190 FvH4_3g15190
malus_domestica	MD10G1206500.v1.1
prunus_persica	Prupe.4G135800_v2.0.a1
pyrus_communis	pycom10g17630
rosa_chinensis	RchiOBHm_Chr2g0164771 RchiOBHm_Chr5g0025631
rosa_laevigata	RLG00000021484 RLG00000021488 RLG00000031602 RLG00000032853
rosa_multiflora	Rmu_sc0002137.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053540 Rroxscaffold_1G00054150 Rroxscaffold_2G00083670 Rroxscaffold_2G00086310
rosa_rugosa	Rorug02G0510100 Rorug02G0529200 Rorug05G0087300
rosa_samantha	Rh2AG578400 Rh2BG589500 Rh2CG560100 Rh2DG599900 Rh5AG179100 Rh5BG178200 Rh5DG177400
rosa_wichuraiana	Rw5G016260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 55, 112
AclWI	GGATC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	92
AhlI	ACTAGT	1 cut(s)	130
AlwI	GGATC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	19, 109
ApoI	RAATTY	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	31, 121
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	3 cut(s)	20, 110, 113
BlsI	GCNGC	3 cut(s)	21, 111, 114
BmsI	GCATC	2 cut(s)	107, 145
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	119
BseJI	GATNNNNATC	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	31, 121
BsgI	GTGCAG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	116, 148
BspACI	CCGC	3 cut(s)	5, 55, 112
BspHI	TCATGA	2 cut(s)	60, 186
BspPI	GGATC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	116, 148
BssT1I	CCWWGG	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	119, 151
BstMBI	GATC	2 cut(s)	116, 148
BstV1I	GCAGC	2 cut(s)	31, 121
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	119
CciI	TCATGA	2 cut(s)	60, 186
CviAII	CATG	3 cut(s)	52, 61, 187
CviJI	RGCY	1 cut(s)	176
CviKI_1	RGCY	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	118, 150
DpnII	GATC	2 cut(s)	116, 148
Eco130I	CCWWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	55, 64, 190
FaiI	YATR	5 cut(s)	44, 53, 62, 188, 202
FatI	CATG	3 cut(s)	51, 60, 186
Fnu4HI	GCNGC	3 cut(s)	20, 110, 113
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	20, 110, 113
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	3 cut(s)	20, 110, 113
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	3 cut(s)	55, 64, 190
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188III	TCNNGA	4 cut(s)	61, 89, 152, 187
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	19, 98
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	55, 64, 190
Kzo9I	GATC	2 cut(s)	116, 148
LpnPI	CCDG	2 cut(s)	27, 74
Lsp1109I	GCAGC	2 cut(s)	31, 121
LweI	GCATC	2 cut(s)	107, 145
MaeI	CTAG	1 cut(s)	131
MalI	GATC	2 cut(s)	118, 150
MboI	GATC	2 cut(s)	116, 148
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	1 cut(s)	92
MnlI	CCTC	3 cut(s)	25, 70, 156
MslI	CAYNNNNRTG	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	116, 148
NlaIII	CATG	3 cut(s)	55, 64, 190
PagI	TCATGA	2 cut(s)	60, 186
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	21, 111, 114
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	103
SatI	GCNGC	3 cut(s)	20, 110, 113
Sau3AI	GATC	2 cut(s)	116, 148
SfaNI	GCATC	2 cut(s)	107, 145
SmiMI	CAYNNNNRTG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	3 cut(s)	5, 55, 112
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	123
TasI	AATT	1 cut(s)	92
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	19, 109
TspDTI	ATGAA	4 cut(s)	37, 49, 77, 203
XapI	RAATTY	1 cut(s)	92
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.