Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Reverse (-)

25229938 .. 25231844

Gene Structure 1907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACGGACCCCCACACCGCCCGGACGATCGTCGGAATCGTTGGAAACGTGATTTCTTTCGGCTTGTTCTGCGCTCCAATACCAACGATGGTGAAGATATGGAAGATGAAATCGGTCTCCGAGTTTAAGCCAGATCCATACGTAGCTACGGTTTTAAACTGCATGATGTGGACATTTTACGGACTTCCTTTCGTCCAGCCCGACAGTCTCCTCGTCATCACCATTAATGGAACTGGTCTTTTCATGGAACTCGTTTACGTCACCATCTTCTTTGTCTTCGCTACCTCCCCTGTCCGCAGAAAGATCACAATAGCTATGGTTATCGAGGTAATATTCATGGCGGTGGTGATCTTCTGCACAATGTATTTTTTGCATACAACAAAGCAGAGATCAATGCTTATTGGGATCTTGTGCATTGTTTTCAACGTCATCATGTATGCTGCTCCTCTCACCGTCATGAAACTTGTGATAAAGACAAAGAGCGTGAAATACATGCCGTTCTTCCTATCATTAGCCAACTTCATGAACGGTGTCGTTTGGGTCATTTATGCATGTCTTAAATTTGACCCTTATATTTTGATTCCAAATGGTCTTGGATCGCTATCAGGAATAATCCAGCTTATAATATACATAACTTACTATAAAACAACTAACTGGAACGATGACGATGAAGATAAAGAAAAGCGCTATTCGAATGCTGGAATCGAACTTGGCCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008643 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0033036 GO:0033037 GO:0034219 GO:0042545 GO:0043062 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055085 GO:0065003 GO:0070727 GO:0071554 GO:0071555 GO:0071702 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

240

Amino Acids

27.21

Weight (kDa)

8.88

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 95	1.6e-20	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	3.2e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AciI	CCGC	3 cut(s)	18, 295, 341
AclWI	GGATC	3 cut(s)	128, 413, 604
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	1 cut(s)	560
AfeI	AGCGCT	1 cut(s)	686
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	3 cut(s)	146, 314, 619
AluI	AGCT	3 cut(s)	146, 314, 619
Alw26I	GTCTC	2 cut(s)	121, 212
AlwI	GGATC	3 cut(s)	128, 413, 604
Aor51HI	AGCGCT	1 cut(s)	686
AoxI	GGCC	1 cut(s)	712
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	560
AseI	ATTAAT	1 cut(s)	225
AspLEI	GCGC	2 cut(s)	74, 687
AspS9I	GGNCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	5 cut(s)	103, 211, 253, 358, 442
AsuII	TTCGAA	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	2 cut(s)	82, 272
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	716
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	121, 212
BfoI	RGCGCY	1 cut(s)	688
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	22, 716
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	22, 716
BoxI	GACNNNNGTC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	268
Bpu14I	TTCGAA	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	142
BsaBI	GATNNNNATC	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	238, 659
Bse8I	GATNNNNATC	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	716
BseJI	GATNNNNATC	1 cut(s)	601
BseNI	ACTGG	2 cut(s)	238, 659
BseRI	GAGGAG	2 cut(s)	200, 435
BseXI	GCAGC	1 cut(s)	427
BsgI	GTGCAG	1 cut(s)	340
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	121, 212
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	714
Bso31I	GGTCTC	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	692
Bsp143I	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
BspACI	CCGC	3 cut(s)	18, 295, 341
BspANI	GGCC	1 cut(s)	714
BspHI	TCATGA	2 cut(s)	456, 522
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	128, 413, 604
BspT104I	TTCGAA	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	238, 659
BssMI	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	4 cut(s)	151, 206, 454, 530
BstBAI	YACGTR	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	692
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	2 cut(s)	74, 687
BstKTI	GATC	7 cut(s)	30, 136, 306, 351, 392, 408, 599
BstMAI	GTCTC	2 cut(s)	121, 212
BstMBI	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	2 cut(s)	496, 555
BstPAI	GACNNNNGTC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	20, 714
BstSNI	TACGTA	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	133, 405
BstYI	RGATCY	2 cut(s)	133, 405
BsuRI	GGCC	1 cut(s)	714
CciI	TCATGA	2 cut(s)	456, 522
CfoI	GCGC	2 cut(s)	74, 687
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	8 cut(s)	163, 244, 337, 433, 457, 493, 523, 552
CviJI	RGCY	9 cut(s)	63, 130, 146, 199, 314, 515, 619, 714, 719
CviKI_1	RGCY	9 cut(s)	63, 130, 146, 199, 314, 515, 619, 714, 719
DpnI	GATC	7 cut(s)	29, 135, 305, 350, 391, 407, 598
DpnII	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
DraI	TTTAAA	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	712
Eco105I	TACGTA	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	714
EcoT22I	ATGCAT	1 cut(s)	553
FaeI	CATG	8 cut(s)	166, 247, 340, 436, 460, 496, 526, 555
FatI	CATG	8 cut(s)	162, 243, 336, 432, 456, 492, 522, 551
Fnu4HI	GCNGC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	441
GlaI	GCGC	2 cut(s)	73, 686
GluI	GCNGC	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	688
HaeIII	GGCC	1 cut(s)	714
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	2 cut(s)	74, 687
Hin1II	CATG	8 cut(s)	166, 247, 340, 436, 460, 496, 526, 555
Hin6I	GCGC	2 cut(s)	72, 685
HinP1I	GCGC	2 cut(s)	72, 685
HinfI	GANTC	3 cut(s)	36, 580, 702
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	5 cut(s)	103, 211, 253, 358, 442
Hpy166II	GTNNAC	2 cut(s)	171, 256
Hpy188I	TCNGA	2 cut(s)	35, 121
Hpy188III	TCNNGA	3 cut(s)	457, 523, 606
Hpy8I	GTNNAC	2 cut(s)	171, 256
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4III	ACNGT	4 cut(s)	151, 206, 454, 530
HpyCH4IV	ACGT	4 cut(s)	48, 141, 258, 426
HpyCH4V	TGCA	5 cut(s)	162, 357, 373, 414, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpySE526I	ACGT	4 cut(s)	48, 141, 258, 426
Hsp92II	CATG	8 cut(s)	166, 247, 340, 436, 460, 496, 526, 555
HspAI	GCGC	2 cut(s)	72, 685
Kzo9I	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
LmnI	GCTCC	2 cut(s)	79, 448
Lsp1109I	GCAGC	1 cut(s)	427
MaeII	ACGT	4 cut(s)	48, 141, 258, 426
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	7 cut(s)	29, 135, 305, 350, 391, 407, 598
MboI	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
MboII	GAAGA	7 cut(s)	106, 115, 259, 268, 343, 493, 683
MflI	RGATCY	2 cut(s)	133, 405
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	1 cut(s)	560
MluNI	TGGCCA	1 cut(s)	714
MmeI	TCCRAC	2 cut(s)	13, 22
MnlI	CCTC	4 cut(s)	221, 295, 319, 456
Mox20I	TGGCCA	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	553
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	4 cut(s)	126, 155, 225, 558
MslI	CAYNNNNRTG	2 cut(s)	341, 455
Msp20I	TGGCCA	1 cut(s)	714
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	22, 716
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
NlaIII	CATG	8 cut(s)	166, 247, 340, 436, 460, 496, 526, 555
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	2 cut(s)	496, 555
NspV	TTCGAA	1 cut(s)	692
PagI	TCATGA	2 cut(s)	456, 522
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 45, 198
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	36, 580, 702
PkrI	GCNGC	1 cut(s)	442
Ple19I	CGATCG	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	142
PshAI	GACNNNNGTC	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	133, 405
PvuI	CGATCG	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	341, 455
SaqAI	TTAA	4 cut(s)	126, 155, 225, 558
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	7 cut(s)	27, 133, 303, 348, 389, 405, 596
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	22, 716
SetI	ASST	9 cut(s)	51, 144, 148, 261, 287, 316, 330, 429, 621
SfuI	TTCGAA	1 cut(s)	692
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	341, 455
SnaBI	TACGTA	1 cut(s)	142
Sse9I	AATT	1 cut(s)	560
SsiI	CCGC	3 cut(s)	18, 295, 341
SspI	AATATT	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	20, 714
TaaI	ACNGT	4 cut(s)	151, 206, 454, 530
TaiI	ACGT	4 cut(s)	51, 144, 261, 429
TaqI	TCGA	3 cut(s)	324, 692, 705
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	1 cut(s)	560
TfiI	GAWTC	3 cut(s)	36, 580, 702
Tru1I	TTAA	4 cut(s)	126, 155, 225, 558
Tru9I	TTAA	4 cut(s)	126, 155, 225, 558
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	7 cut(s)	122, 232, 325, 473, 511, 539, 684
TspGWI	ACGGA	2 cut(s)	20, 195
VpaK11BI	GGWCC	1 cut(s)	7
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	2 cut(s)	496, 555
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.