Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Reverse (-)

21596732 .. 21598809

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGAACACAGACGCCATTAGAACTGTTGTTGGGATCATTGGTAATGTCATCTCTTTCGGCTTGTTCACGTCCCCAATCCCAACATTTGTAAAGATAATTAAGGACAAATCAGTTGGAGATTTCAAGGCGGATCCTTATGTAGCAACTTTGCTTAATTGTGCTATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGACAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATGTTTCAATCTTTCTCTTATATTCTCCTGCCCAAAAACGGAAAATGGTCATCAAGACAAAAAGTGTCAAGTACATGCCATTTGCCCTCTCGCTCGCCAACTTTTGCAATGGAGTTGTCTGGTCTATTTATGCACTCCTCAAGTTTGACCCCTATGTTCTGATTCCTAATGGTTTGGGATCGCTTTCGGGCCTGGTGCAACTCATATTGTATGGCACTTACTACAGAACCACTAACTGGGATGATAACGATGAAAAGCCAAAACCTGAAGTTGAACTCCCTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

181

Amino Acids

20.17

Weight (kDa)

8.77

Isoelectric Point (pI)

20.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	3.6e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	94 - 162	2e-18	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	492
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	4 cut(s)	44, 128, 141, 442
AcuI	CTGAAG	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	294, 492
AgsI	TTSAA	3 cut(s)	127, 264, 530
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	4 cut(s)	44, 128, 141, 442
AoxI	GGCC	2 cut(s)	181, 445
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	171, 445
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	133
BccI	CCATC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	171
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	171, 445
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 492
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	449
BseGI	GGATG	2 cut(s)	196, 502
BseLI	CCNNNNNNNGG	2 cut(s)	294, 492
BseMI	GCAATG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	2 cut(s)	200, 383
BshFI	GGCC	2 cut(s)	183, 447
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	294, 492
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	183, 447
Bsp143I	GATC	4 cut(s)	36, 133, 222, 434
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	183, 447
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	4 cut(s)	44, 128, 141, 442
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	4 cut(s)	36, 133, 222, 434
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	28, 206
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	235, 351
BstF5I	GGATG	2 cut(s)	196, 502
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	39, 136, 225, 437
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	36, 133, 222, 434
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	183, 447
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	196, 502
Cac8I	GCNNGC	2 cut(s)	235, 351
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	171, 445
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	5 cut(s)	63, 183, 237, 447, 514
CviKI_1	RGCY	5 cut(s)	63, 183, 237, 447, 514
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	4 cut(s)	38, 135, 224, 436
DpnII	GATC	4 cut(s)	36, 133, 222, 434
EciI	GGCGGA	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	543
EcoRII	CCWGG	1 cut(s)	447
FaeI	CATG	1 cut(s)	334
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	330
FokI	GGATG	2 cut(s)	183, 509
GlaI	GCGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	183, 447
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	418
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	7, 69
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	2 cut(s)	200, 310
Hpy8I	GTNNAC	2 cut(s)	7, 69
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	28, 206
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	3 cut(s)	363, 389, 454
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	36, 133, 222, 434
LpnPI	CCDG	8 cut(s)	213, 219, 297, 361, 434, 461, 478, 534
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	38, 135, 224, 436
MboI	GATC	4 cut(s)	36, 133, 222, 434
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	2 cut(s)	99, 157
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	221, 353, 404
MseI	TTAA	2 cut(s)	102, 156
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
NdeII	GATC	4 cut(s)	36, 133, 222, 434
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	418
PflMI	CCANNNNNTGG	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	171, 445
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	102, 156
Sau3AI	GATC	4 cut(s)	36, 133, 222, 434
Sau96I	GGNCC	2 cut(s)	171, 445
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	2 cut(s)	74, 523
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	99, 157
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	28, 206
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	99, 157
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	102, 156
Tru9I	TTAA	2 cut(s)	102, 156
TspDTI	ATGAA	2 cut(s)	232, 522
TspGWI	ACGGA	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.