Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9106047 .. 9106854

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1079800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCCAATGTTGAAGCAATTAGGATCCTCGTAGGCACCATTGGAAATGTCATATCTTTTTTCTTATTTACCTCTCCAATCCCAACATTTGTGAAAAGCATCAAGCAAAAGTCAGTTGGCGAATTCAAGCCATATCCTTATATTGCAACTCTGCTTAATTGTGCAATATTGTGGTCGTTTTACGGCATGCCGATTGTTAATCCGGATAGCCTTCTTGTCATTGCAATCAATGGCACTCGATTTTTAATTGAACTCGTTTATATTGCCATCTTCTTCACATATTCTTCTGGAAAAAAACGCCGAAATATCATGTTTGCTCTTCTGGTTGAAGCTGCATTCGTTGCCATTGTGGTTTTCATTACCCTACATTTATTCCACACAACGAAAGACCGGTCGATGATAATTGAGCTCTTGTCCATTGTCTTCAATATCATTATGTACGCGTCACCCTTGACCTTCATGGTATGTATTTTATGCGTGTACGCGTACTGCTATTCAGACAACATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

171

Amino Acids

19.28

Weight (kDa)

8.9

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 98	6.7e-18	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccII	CGCG	2 cut(s)	443, 485
AccIII	TCCGGA	1 cut(s)	202
AclWI	GGATC	2 cut(s)	19, 32
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	122
AfaI	GTAC	3 cut(s)	440, 482, 488
AflIII	ACRYGT	2 cut(s)	441, 483
AgeI	ACCGGT	1 cut(s)	390
AgsI	TTSAA	5 cut(s)	14, 127, 251, 329, 427
AluBI	AGCT	2 cut(s)	332, 409
AluI	AGCT	2 cut(s)	332, 409
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	19, 32
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AsiGI	ACCGGT	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	438
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	26, 37
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	415
BsaWI	WCCGGW	2 cut(s)	202, 390
Bse118I	RCCGGY	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	443, 485
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	35
BshTI	ACCGGT	1 cut(s)	390
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	203, 391
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	443, 485
BspLI	GGNNCC	2 cut(s)	26, 37
BspPI	GGATC	2 cut(s)	19, 32
BspQI	GCTCTTC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssMI	GATC	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	188
BstFNI	CGCG	2 cut(s)	443, 485
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	190
BstUI	CGCG	2 cut(s)	443, 485
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	390
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	3 cut(s)	439, 481, 487
CspAI	ACCGGT	1 cut(s)	390
CviAII	CATG	3 cut(s)	187, 310, 460
CviJI	RGCY	5 cut(s)	5, 130, 210, 332, 409
CviKI_1	RGCY	5 cut(s)	5, 130, 210, 332, 409
CviQI	GTAC	3 cut(s)	439, 481, 487
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	3 cut(s)	190, 313, 463
FatI	CATG	3 cut(s)	186, 309, 459
Fnu4HI	GCNGC	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	203, 391
HgaI	GACGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	190, 313, 463
HpaII	CCGG	2 cut(s)	203, 391
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	2 cut(s)	203, 288
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	221, 466
HpyCH4V	TGCA	4 cut(s)	146, 164, 224, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	190, 313, 463
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	4 cut(s)	216, 273, 308, 404
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	5 cut(s)	262, 265, 276, 311, 415
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	411
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	18, 122, 157, 246, 402
MluI	ACGCGT	2 cut(s)	441, 483
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	38, 82
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	202
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	156, 198, 245
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	203, 391
Mva1269I	GAATGC	1 cut(s)	335
MvnI	CGCG	2 cut(s)	443, 485
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	190, 313, 463
NlaIV	GGNNCC	2 cut(s)	26, 37
NmuCI	GTSAC	1 cut(s)	444
NspI	RCATGY	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	324
PctI	GAATGC	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	390
PkrI	GCNGC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	26, 37
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	3 cut(s)	440, 482, 488
RsaNI	GTAC	3 cut(s)	439, 481, 487
SacI	GAGCTC	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	156, 198, 245
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	4 cut(s)	74, 334, 411, 458
SfaNI	GCATC	1 cut(s)	108
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	5 cut(s)	18, 122, 157, 246, 402
SspI	AATATT	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	411
TaqI	TCGA	2 cut(s)	238, 395
TasI	AATT	5 cut(s)	18, 122, 157, 246, 402
Tru1I	TTAA	3 cut(s)	156, 198, 245
Tru9I	TTAA	3 cut(s)	156, 198, 245
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	2 cut(s)	346, 448
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.