Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Forward (+)

62682410 .. 62684574

Gene Structure 2165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAACACAGACGCCATTAGAACTGTTGTTGGGATCATTGGTAATGTCATCTCTTTCGGCTTGTTTACGTCCCCAATCCCAACATTTGTAAAGATAATTAAGGACAAATCAGTTGGAGATTTCAAGGCGGATCCTTATGTAGCAACTTTGCTTAATTGTGCTATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGACAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATGTTTCAATCTTTCTCTTATATTCTCCTGCCCAAAAACGGCGAAAAATCATCAGTGCTCTTCTGGTTGAAGCAATCTTTTTTGCCGTTGTGGTTTTTATTACTATTCACGTTTTCCATACCACTAAAGACAGGTCTATGATAATTGGGATTTTGAGTATTGTCTTCAATATCATTATGTATGCGTCACCCTTAACAGTCATGAAAATGGTCATCAAGACAAAAAGTGTCAAGTACATGCCATTTGCCCTCTCGCTCGCCAACTTTTGCAATGGAGTTGTCTGGTCTATTTATGCACTCCTCAAGTTTGACCCCTATATCCTGATTCCTAATGGTTTGGGATCGCTTTCGGGCCTGGTGCAACTCATATTGTACGGCACTTACTACAGATCCACTAGCTGGGATGATAACGATGAAAAGCCAAAACCTGAAGTTGAACTCCCTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

26.22

Weight (kDa)

9.1

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	6e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	1.3e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	5 cut(s)	44, 128, 141, 604, 639
AcuI	CTGAAG	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	491, 629
AfiI	CCNNNNNNNGG	2 cut(s)	294, 654
AgsI	TTSAA	5 cut(s)	127, 264, 326, 424, 692
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	1 cut(s)	654
AluI	AGCT	1 cut(s)	654
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	5 cut(s)	44, 128, 141, 604, 639
AoxI	GGCC	2 cut(s)	181, 607
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	171, 607
AsuHPI	GGTGA	2 cut(s)	16, 435
AvaII	GGWCC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	316
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	3 cut(s)	311, 326, 646
BciT130I	CCWGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	171, 607
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 654
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	196, 664
BseLI	CCNNNNNNNGG	2 cut(s)	294, 654
BseMI	GCAATG	1 cut(s)	532
BseRI	GAGGAG	2 cut(s)	200, 545
BseYI	CCCAGC	1 cut(s)	654
BshFI	GGCC	2 cut(s)	183, 609
BsiHKAI	GWGCWC	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	294, 654
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	183, 609
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	5 cut(s)	36, 133, 222, 596, 644
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	183, 609
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	5 cut(s)	44, 128, 141, 604, 639
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	532
BssMI	GATC	5 cut(s)	36, 133, 222, 596, 644
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	28, 206, 454
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	235, 513
BstF5I	GGATG	2 cut(s)	196, 664
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	5 cut(s)	39, 136, 225, 599, 647
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	5 cut(s)	36, 133, 222, 596, 644
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	133, 644
BstYI	RGATCY	2 cut(s)	133, 644
BsuRI	GGCC	2 cut(s)	183, 609
BtsCI	GGATG	2 cut(s)	196, 664
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	235, 513
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	171, 607
CseI	GACGC	2 cut(s)	23, 429
Csp6I	GTAC	2 cut(s)	490, 628
CviAII	CATG	2 cut(s)	457, 493
CviJI	RGCY	6 cut(s)	63, 183, 237, 609, 654, 676
CviKI_1	RGCY	6 cut(s)	63, 183, 237, 609, 654, 676
CviQI	GTAC	2 cut(s)	490, 628
DpnI	GATC	5 cut(s)	38, 135, 224, 598, 646
DpnII	GATC	5 cut(s)	36, 133, 222, 596, 644
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	609
FaeI	CATG	2 cut(s)	460, 496
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	456, 492
FokI	GGATG	2 cut(s)	183, 671
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	1 cut(s)	232
GsaI	CCCAGC	1 cut(s)	658
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	183, 609
HgaI	GACGC	2 cut(s)	23, 429
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	460, 496
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	580
HphI	GGTGA	2 cut(s)	16, 435
Hpy166II	GTNNAC	2 cut(s)	7, 69
Hpy188III	TCNNGA	4 cut(s)	200, 457, 472, 577
Hpy8I	GTNNAC	2 cut(s)	7, 69
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	28, 206, 454
HpyCH4IV	ACGT	2 cut(s)	71, 366
HpyCH4V	TGCA	3 cut(s)	525, 551, 616
HpySE526I	ACGT	2 cut(s)	71, 366
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	460, 496
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	36, 133, 222, 596, 644
LguI	GCTCTTC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	2 cut(s)	71, 366
MaeIII	GTNAC	2 cut(s)	217, 441
MalI	GATC	5 cut(s)	38, 135, 224, 598, 646
MboI	GATC	5 cut(s)	36, 133, 222, 596, 644
MboII	GAAGA	3 cut(s)	232, 308, 412
MflI	RGATCY	2 cut(s)	133, 644
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	99, 157, 399
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	221, 515, 566
MseI	TTAA	3 cut(s)	102, 156, 449
MslI	CAYNNNNRTG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	611
NdeII	GATC	5 cut(s)	36, 133, 222, 596, 644
NlaIII	CATG	2 cut(s)	460, 496
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	441
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	171, 607
PsuI	RGATCY	2 cut(s)	133, 644
RsaI	GTAC	2 cut(s)	491, 629
RsaNI	GTAC	2 cut(s)	490, 628
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	102, 156, 449
Sau3AI	GATC	5 cut(s)	36, 133, 222, 596, 644
Sau96I	GGNCC	2 cut(s)	171, 607
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	5 cut(s)	74, 369, 392, 656, 685
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	99, 157, 399
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	28, 206, 454
TaiI	ACGT	2 cut(s)	74, 369
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	99, 157, 399
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	3 cut(s)	102, 156, 449
Tru9I	TTAA	3 cut(s)	102, 156, 449
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	441
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	3 cut(s)	232, 473, 684
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.