Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Forward (+)

27945823 .. 27948018

Gene Structure 2196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGCACACAGACGCCATCAGAACTATCGTCGGGATCATTGGTAATATCATTTCCTTCGGCTTGTTTACATCCCCAATTCCAACATTTGTAAAGATAATCAAGGACAAATCGGTAGGAGATTTCAAATCGGATCCTTATGCAGCAACTTTGCTTAATTGTGCTATGTGGTCATTTTATGGCCTTCCCATTGTCCATCCCGACAGTCTGCTCGTTGTTACTATCAATGGCACTGGCTTTTTCATCGAACTCATCTATGTTTCAATCTTTCTCATATATTCTCCTCCCCAGAAACGCCGAAAAATTATCAGTGCTCTCCTGGTTGAAGCAATCTTTTTTGCTGTTGTGGCTTTTATTACCATTTACGTTTACCATACAACTAAAGAAAGGACAATGATCATTGGAATCTTGTCTATTGTCTTCAATATCATCATGTATGCATCACCCTTAACAGTCATGAAAATGGTAATCAAGACAAAAAGTGTCAAGTACATGCCATTTGCCCTCTCACTCGCCAACTTTTGCAATGGAATTATCTGGTCTGTTTATGCACTCCTCAAGTTTGATCCCTATATTCTGATTCCTAATGGTTTGGGCTCGCTTTCGGGACTGGTGCAACTCATCTTGTATGGCACTTTCTACAGAACCACTAACTGGCATGATAACGAAGAAAAGCCAAAACCTGAAGTTGAACTCCCTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

236

Amino Acids

26.43

Weight (kDa)

9.21

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	1.5e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	8.2e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AclWI	GGATC	4 cut(s)	44, 128, 141, 560
AcuI	CTGAAG	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	654
AgsI	TTSAA	5 cut(s)	127, 264, 326, 424, 692
AjnI	CCWGG	1 cut(s)	318
Alw21I	GWGCWC	2 cut(s)	9, 316
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	4 cut(s)	44, 128, 141, 560
AoxI	GGCC	1 cut(s)	181
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	9
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	9, 316
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	26, 204
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	640
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	3 cut(s)	238, 615, 659
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	320
BseGI	GGATG	2 cut(s)	71, 196
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	1 cut(s)	532
BseNI	ACTGG	3 cut(s)	238, 615, 659
BseRI	GAGGAG	2 cut(s)	273, 545
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	2 cut(s)	9, 316
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	621
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	9, 316, 599
Bsp143I	GATC	4 cut(s)	36, 133, 396, 565
BspANI	GGCC	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	4 cut(s)	44, 128, 141, 560
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	3 cut(s)	238, 615, 659
BssMI	GATC	4 cut(s)	36, 133, 396, 565
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	206, 454
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	71, 196
BstKTI	GATC	4 cut(s)	39, 136, 399, 568
BstMBI	GATC	4 cut(s)	36, 133, 396, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	71, 196
BtsIMutI	CAGTG	2 cut(s)	231, 316
Cac8I	GCNNGC	1 cut(s)	599
CciI	TCATGA	1 cut(s)	456
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	4 cut(s)	433, 457, 493, 659
CviJI	RGCY	6 cut(s)	63, 183, 237, 350, 597, 676
CviKI_1	RGCY	6 cut(s)	63, 183, 237, 350, 597, 676
CviQI	GTAC	1 cut(s)	490
DpnI	GATC	4 cut(s)	38, 135, 398, 567
DpnII	GATC	4 cut(s)	36, 133, 396, 565
Eco24I	GRGCYC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	599
FaeI	CATG	4 cut(s)	436, 460, 496, 662
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	4 cut(s)	432, 456, 492, 658
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	58, 183
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	436, 460, 496, 662
HinfI	GANTC	2 cut(s)	405, 580
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	3 cut(s)	7, 69, 370
Hpy188I	TCNGA	3 cut(s)	23, 133, 579
Hpy188III	TCNNGA	5 cut(s)	34, 200, 457, 472, 606
Hpy8I	GTNNAC	3 cut(s)	7, 69, 370
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	67, 194
HpyCH4III	ACNGT	2 cut(s)	206, 454
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	6 cut(s)	7, 143, 440, 525, 551, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	436, 460, 496, 662
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	4 cut(s)	36, 133, 396, 565
LpnPI	CCDG	8 cut(s)	219, 302, 305, 332, 523, 596, 640, 696
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	449
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	38, 135, 398, 567
MboI	GATC	4 cut(s)	36, 133, 396, 565
MboII	GAAGA	2 cut(s)	412, 680
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	3 cut(s)	9, 316, 599
MluCI	AATT	4 cut(s)	78, 157, 303, 531
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	3 cut(s)	294, 515, 566
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	2 cut(s)	156, 449
MslI	CAYNNNNRTG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	4 cut(s)	36, 133, 396, 565
NlaIII	CATG	4 cut(s)	436, 460, 496, 662
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	405, 580
PflMI	CCANNNNNTGG	1 cut(s)	654
PkrI	GCNGC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	156, 449
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	4 cut(s)	36, 133, 396, 565
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	3 cut(s)	9, 316, 599
SetI	ASST	2 cut(s)	369, 685
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	4 cut(s)	78, 157, 303, 531
StyD4I	CCNGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	206, 454
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	78, 157, 303, 531
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	405, 580
Tru1I	TTAA	2 cut(s)	156, 449
Tru9I	TTAA	2 cut(s)	156, 449
TscAI	CASTG	2 cut(s)	238, 316
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	232, 473
TspRI	CASTG	2 cut(s)	238, 316
Van91I	CCANNNNNTGG	1 cut(s)	654
VneI	GTGCAC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.