Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Reverse (-)

11913868 .. 11915427

Gene Structure 1560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG140000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCATAGCCACCCTCAAACCTCTTGTAGGGCTCCTAGGCAATCTCATAATTTTATGGTTGTTTGTCTCCCCAATCCCAACATTTGTGAAAATAATCAATAAAAAAACAGTAGGAGAATTCAAGCCAGATCCTTATTTAGCAACTTTGCTTAATTGCGCATTGTGGTTCTTTTATGGTCTACCGCGCGTCTGTCCGAACTTCAATAGCCTTTACTACTGTTATTTTCATGGACCGATTCCGATCGATCCTGCAATCATCGGTACCGGAATCTTTCTTGAACTCGTCTACATTGCCATCTTCTTTGCATATTCTTCGGCAACGAAACGCATAAATGTCATCATTGCTCTTGTGATTGAAGTTTTCTGCCTTCTTCTTGTTGCTCTCGCAATTACCATTCCCTCATATCGTCCTTCAGTCCGCTGCAGGATTCTCGACTACTTATGTGTTCTCTCCAATGTCATTATGTATGGGTCACCCTTAACAGTCATGAAAATGGTCATCGAGACGAAGAGTGTCAAATACATGCCACATTATCTCTCAGTTGCTTACTTTTGCAGTGGAGTTGTTTGGCTGATCCATACATTTATTACTCGAGCTTATTTCTCCATCCTGCTGATGACATATGGTTTGGGATCAGCTTTAGGGTTGGTGCAGCTCATTCTTTACGCCCACTACTACAAAACAGCGCAATGGGATGATGAAAATGTTAAAAAGCCTGAGCCCGAGCGTCAACTTTCTGGCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

249

Amino Acids

28.16

Weight (kDa)

8.98

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	9 - 61	6e-13	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	145 - 229	9.4e-15	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	160
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	2 cut(s)	181, 288
AccII	CGCG	2 cut(s)	187, 189
AciI	CCGC	2 cut(s)	185, 421
AclWI	GGATC	4 cut(s)	125, 242, 571, 643
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	124, 205, 281, 359
AluBI	AGCT	3 cut(s)	599, 641, 658
AluI	AGCT	3 cut(s)	599, 641, 658
Alw26I	GTCTC	2 cut(s)	73, 500
AlwI	GGATC	4 cut(s)	125, 242, 571, 643
Ama87I	CYCGRG	2 cut(s)	594, 725
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	423, 655
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	613, 645
Asp718I	GGTACC	1 cut(s)	263
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	3 cut(s)	161, 189, 691
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	468
AvaI	CYCGRG	2 cut(s)	594, 725
AvaII	GGWCC	1 cut(s)	233
AvrII	CCTAGG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	36, 726
BbvI	GCAGC	2 cut(s)	410, 667
BccI	CCATC	2 cut(s)	305, 617
BcgI	CGANNNNNNTGC	4 cut(s)	297, 331, 415, 449
BcoDI	GTCTC	2 cut(s)	73, 500
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	424, 656
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	2 cut(s)	425, 657
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	2 cut(s)	594, 725
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	35, 265
Bpu10I	CCTNAGC	1 cut(s)	720
Bsa29I	ATCGAT	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse3DI	GCAATG	3 cut(s)	291, 342, 698
Bse8I	GATNNNNATC	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	609, 703
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	3 cut(s)	291, 342, 698
BseMII	CTCAG	2 cut(s)	555, 711
BseXI	GCAGC	2 cut(s)	410, 667
BsgI	GTGCAG	1 cut(s)	674
Bsh1236I	CGCG	2 cut(s)	187, 189
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	246
BsiEI	CGRYCG	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	594, 725
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	73, 500
BsmBI	CGTCTC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	594, 725
Bsp1286I	GDGCHC	2 cut(s)	36, 726
Bsp143I	GATC	5 cut(s)	130, 243, 247, 576, 635
BspACI	CCGC	2 cut(s)	185, 421
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	554, 712
BspDI	ATCGAT	1 cut(s)	246
BspFNI	CGCG	2 cut(s)	187, 189
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	35, 265
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	4 cut(s)	125, 242, 571, 643
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	3 cut(s)	291, 342, 698
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	5 cut(s)	130, 243, 247, 576, 635
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	3 cut(s)	112, 221, 487
Bst6I	CTCTTC	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	541, 720
BstEII	GGTNACC	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	609, 703
BstFNI	CGCG	2 cut(s)	187, 189
BstHHI	GCGC	3 cut(s)	161, 189, 691
BstKTI	GATC	5 cut(s)	133, 246, 250, 579, 638
BstMAI	GTCTC	2 cut(s)	73, 500
BstMBI	GATC	5 cut(s)	130, 243, 247, 576, 635
BstMCI	CGRYCG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	529
BstPI	GGTNACC	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	424
BstUI	CGCG	2 cut(s)	187, 189
BstV1I	GCAGC	2 cut(s)	410, 667
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	609, 703
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	565
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	3 cut(s)	161, 189, 691
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	246
CseI	GACGC	2 cut(s)	178, 719
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	3 cut(s)	230, 490, 526
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	541, 720
DpnI	GATC	5 cut(s)	132, 245, 249, 578, 637
DpnII	GATC	5 cut(s)	130, 243, 247, 576, 635
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	36, 726
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	2 cut(s)	594, 725
Eco91I	GGTNACC	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	2 cut(s)	36, 726
ErhI	CCWWGG	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	3 cut(s)	233, 493, 529
FatI	CATG	3 cut(s)	229, 489, 525
FauNDI	CATATG	1 cut(s)	625
FblI	GTMKAC	2 cut(s)	181, 288
Fnu4HI	GCNGC	2 cut(s)	424, 656
FokI	GGATG	2 cut(s)	596, 710
FriOI	GRGCYC	2 cut(s)	36, 726
Fsp4HI	GCNGC	2 cut(s)	424, 656
FspBI	CTAG	1 cut(s)	38
FspI	TGCGCA	1 cut(s)	160
GlaI	GCGC	3 cut(s)	160, 188, 690
GluI	GCNGC	2 cut(s)	424, 656
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	2 cut(s)	178, 719
HhaI	GCGC	3 cut(s)	161, 189, 691
Hin1II	CATG	3 cut(s)	233, 493, 529
Hin6I	GCGC	3 cut(s)	159, 187, 689
HinP1I	GCGC	3 cut(s)	159, 187, 689
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HinfI	GANTC	3 cut(s)	238, 270, 430
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	3 cut(s)	182, 289, 734
Hpy188I	TCNGA	2 cut(s)	198, 243
Hpy188III	TCNNGA	4 cut(s)	278, 434, 490, 505
Hpy8I	GTNNAC	3 cut(s)	182, 289, 734
HpyAV	CCTTC	2 cut(s)	380, 423
HpyCH4III	ACNGT	3 cut(s)	112, 221, 487
HpyCH4V	TGCA	5 cut(s)	254, 308, 426, 558, 655
HpyF3I	CTNAG	2 cut(s)	541, 720
Hsp92II	CATG	3 cut(s)	233, 493, 529
HspAI	GCGC	3 cut(s)	159, 187, 689
KpnI	GGTACC	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	130, 243, 247, 576, 635
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	7 cut(s)	141, 264, 280, 412, 626, 726, 732
Lsp1109I	GCAGC	2 cut(s)	410, 667
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	5 cut(s)	132, 245, 249, 578, 637
MboI	GATC	5 cut(s)	130, 243, 247, 576, 635
MboII	GAAGA	4 cut(s)	292, 306, 365, 523
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	36, 726
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	51, 119, 154, 390
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	26, 33, 412
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	153, 482, 711
MslI	CAYNNNNRTG	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	1 cut(s)	267
MvnI	CGCG	2 cut(s)	187, 189
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	5 cut(s)	130, 243, 247, 576, 635
NlaIII	CATG	3 cut(s)	233, 493, 529
NlaIV	GGNNCC	2 cut(s)	35, 265
NmuCI	GTSAC	1 cut(s)	474
NsbI	TGCGCA	1 cut(s)	160
NspI	RCATGY	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	594
PagI	TCATGA	1 cut(s)	489
PfeI	GAWTC	3 cut(s)	238, 270, 430
PkrI	GCNGC	2 cut(s)	425, 657
Ple19I	CGATCG	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	35, 265
PspPI	GGNCC	1 cut(s)	233
PspXI	VCTCGAGB	1 cut(s)	594
PstI	CTGCAG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	130
PvuI	CGATCG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	3 cut(s)	153, 482, 711
SatI	GCNGC	2 cut(s)	424, 656
Sau3AI	GATC	5 cut(s)	130, 243, 247, 576, 635
Sau96I	GGNCC	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	36, 726
SetI	ASST	4 cut(s)	25, 601, 643, 660
SfcI	CTRYAG	1 cut(s)	424
Sfr274I	CTCGAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	4 cut(s)	51, 119, 154, 390
SsiI	CCGC	2 cut(s)	185, 421
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	3 cut(s)	112, 221, 487
TaqI	TCGA	4 cut(s)	246, 435, 504, 595
TaqII	GACCGA	1 cut(s)	250
TasI	AATT	4 cut(s)	51, 119, 154, 390
TfiI	GAWTC	3 cut(s)	238, 270, 430
Tru1I	TTAA	3 cut(s)	153, 482, 711
Tru9I	TTAA	3 cut(s)	153, 482, 711
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	2 cut(s)	423, 655
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	3 cut(s)	218, 506, 717
TspRI	CASTG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	594
XmaJI	CCTAGG	1 cut(s)	37
XmiI	GTMKAC	2 cut(s)	181, 288
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.