Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Forward (+)

66832306 .. 66838925

Gene Structure 6620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG454200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTGAACACAGATGCCATTAGAACTGTTGTTGGGATCATTGGTAATGTCATCTCTTTCGGCCTGTTTACGTCCCCAATCCCAACATTTGTAAAGATAATTAAGGACAAATCAGTTGGAGATTTCAAGGCGGATCCTTATGTAGCAACTTTGCTTAATTGTGCTATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGACAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATGTTTCAATCTTTCTCTTATATTCTCCTGCCCAAAAACGGCGAAAAATCATCAGTGCTCTTCTGGTTGAAGCAATCTTTTTTGCCGTTGTGGTTTTTATTACTATTCACGTTTTCCATACCACCAAAGACAGGTCTATGATAATTGGGATTTTGTGTATTGTCTTCAATATCATTATGTATGCATCACCCTTAACAGTCATGAAAATGGTCATCAAGACAAAAAGTGTCAAGTACATGCCATTTGCCCTCTCGCTCGCCAACTTTTGCAATGGAGTTGTCTGGTCTATTTATGCACTCCTCAAGTTTGACCCTTATGTTCTGAAATTGGGTCAGGAGGAAAGAATCAGGCTAAAGTCTGAAACCGACTATCCACAAATAGAGAAGAAGCAAGGGTTCTTCTCTGCCCTTAAAGATGAGGTGGTTCGCGGCCTCAGCCCCTCTCGCTCCCACTTCACCAGCCCCGCCTGCTCCTGCTCCCCCAAGTCGGGTCTGCTCCGCCGGAAGAAGCAACACAGCCACCAAGACGGTAGCGGCCACGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

266

Amino Acids

29.69

Weight (kDa)

9.58

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	7.8e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 192	7e-18	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	684
AciI	CCGC	5 cut(s)	131, 684, 720, 754, 789
AclWI	GGATC	3 cut(s)	44, 128, 141
AcoI	YGGCCR	1 cut(s)	790
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	294, 387, 742, 743
AgsI	TTSAA	4 cut(s)	127, 264, 326, 424
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	44, 128, 141
AoxI	GGCC	4 cut(s)	61, 181, 685, 790
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	3 cut(s)	16, 435, 703
AvaII	GGWCC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	689
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	2 cut(s)	311, 326
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	799
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	2 cut(s)	685, 790
BlsI	GCNGC	2 cut(s)	686, 791
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	2 cut(s)	4, 449
BpiI	GAAGAC	1 cut(s)	412
Bpu10I	CCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 387, 742, 743
Bse3DI	GCAATG	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	793
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	4 cut(s)	294, 387, 742, 743
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	703
BseRI	GAGGAG	2 cut(s)	200, 545
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	4 cut(s)	63, 183, 687, 792
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	4 cut(s)	294, 387, 742, 743
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	4 cut(s)	63, 183, 687, 792
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	36, 133, 222
BspACI	CCGC	5 cut(s)	131, 684, 720, 754, 789
BspANI	GGCC	4 cut(s)	63, 183, 687, 792
BspCNI	CTCAG	1 cut(s)	702
BspFNI	CGCG	1 cut(s)	684
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	44, 128, 141
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	793
BssMI	GATC	3 cut(s)	36, 133, 222
Bst4CI	ACNGT	4 cut(s)	28, 206, 454, 785
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	235, 513, 724
BstDEI	CTNAG	1 cut(s)	689
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	684
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	39, 136, 225
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	3 cut(s)	36, 133, 222
BstMWI	GCNNNNNNNGC	4 cut(s)	690, 699, 723, 795
BstNSI	RCATGY	1 cut(s)	496
BstUI	CGCG	1 cut(s)	684
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	4 cut(s)	63, 183, 687, 792
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	235, 513, 724
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	2 cut(s)	457, 493
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	3 cut(s)	38, 135, 224
DpnII	GATC	3 cut(s)	36, 133, 222
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	2 cut(s)	146, 743
Eco47I	GGWCC	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	2 cut(s)	460, 496
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	456, 492
FauI	CCCGC	1 cut(s)	727
Fnu4HI	GCNGC	2 cut(s)	685, 790
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	685, 790
FspBI	CTAG	1 cut(s)	799
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	685, 790
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	63, 183, 687, 792
HapII	CCGG	1 cut(s)	757
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	460, 496
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	600
HpaII	CCGG	1 cut(s)	757
HphI	GGTGA	3 cut(s)	16, 435, 703
Hpy166II	GTNNAC	2 cut(s)	7, 69
Hpy188I	TCNGA	2 cut(s)	579, 616
Hpy188III	TCNNGA	4 cut(s)	200, 457, 472, 590
Hpy8I	GTNNAC	2 cut(s)	7, 69
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	4 cut(s)	28, 206, 454, 785
HpyCH4IV	ACGT	2 cut(s)	71, 366
HpyCH4V	TGCA	3 cut(s)	440, 525, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	690, 699, 723, 795
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	2 cut(s)	71, 366
Hsp92II	CATG	2 cut(s)	460, 496
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	36, 133, 222
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	4 cut(s)	707, 731, 737, 756
LweI	GCATC	2 cut(s)	4, 449
MaeI	CTAG	1 cut(s)	799
MaeII	ACGT	2 cut(s)	71, 366
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	38, 135, 224
MboI	GATC	3 cut(s)	36, 133, 222
MboII	GAAGA	6 cut(s)	232, 308, 412, 646, 652, 772
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	4 cut(s)	99, 157, 399, 581
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	7 cut(s)	221, 515, 566, 586, 667, 698, 706
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	4 cut(s)	102, 156, 449, 666
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	1 cut(s)	757
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	4 cut(s)	690, 699, 723, 795
NdeII	GATC	3 cut(s)	36, 133, 222
NlaIII	CATG	2 cut(s)	460, 496
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	600
PkrI	GCNGC	2 cut(s)	686, 791
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	102, 156, 449, 666
SatI	GCNGC	2 cut(s)	685, 790
Sau3AI	GATC	3 cut(s)	36, 133, 222
Sau96I	GGNCC	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	4 cut(s)	74, 369, 392, 678
SfaNI	GCATC	2 cut(s)	4, 449
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	4 cut(s)	99, 157, 399, 581
SsiI	CCGC	5 cut(s)	131, 684, 720, 754, 789
SspMI	CTAG	1 cut(s)	799
TaaI	ACNGT	4 cut(s)	28, 206, 454, 785
TaiI	ACGT	2 cut(s)	74, 369
TaqI	TCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	99, 157, 399, 581
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	687, 792
TfiI	GAWTC	1 cut(s)	600
Tru1I	TTAA	4 cut(s)	102, 156, 449, 666
Tru9I	TTAA	4 cut(s)	102, 156, 449, 666
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	232, 473
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	1 cut(s)	799
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.