Rh2CG441300

sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010658
Physical Location & Seq
Forward (+)
59806094 .. 59809741
3648 bp
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UTR
Exon/CDS
Intron
Rh2CG441300.1

Sequence Viewer

Length: 438 bp
ATGGTGAACACAGATGCCATTAGAACTGTTGTTGGGATCATTGGTAATGTCATCTCTTTCGGCCTGTTTACGTCCCCAATCCCAACATTTGTAAAGATAATTAAGGACAAATCAGTTGGAGATTTCAAGGCGGATCCTTATGTAGCAACTTTGCTTAATTGTGCTATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGACAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATGTTTCAATCTTTCTCTTATATTCTCCTGCCCAAAAACGGCGAAAAATCATCAGTGCTCTTCTGGTTGAAGCAATCTTTTTTGCCGTTGTGGTTTTTATTACTATTCACGTTTTCCATACCACCAAAGACAGAATGACTTTCCTATATTACCCTTATCATGATTATTATGTCTTCCACTAA

Protein Analysis

145

Amino Acids

16.48

Weight (kDa)

8.67

Isoelectric Point (pI)

24.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 10 - 97 1.8e-23 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AclWI GGATC 3 cut(s) 44, 128, 141
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 3 cut(s) 127, 264, 326
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 3 cut(s) 44, 128, 141
AoxI GGCC 2 cut(s) 61, 181
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 171
BamHI GGATCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 316
BccI CCATC 1 cut(s) 204
BceAI ACGGC 2 cut(s) 311, 326
BcoDI GTCTC 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 421
Bsc4I CCNNNNNNNGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 200
BshFI GGCC 2 cut(s) 63, 183
BsiHKAI GWGCWC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 2 cut(s) 63, 183
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 3 cut(s) 36, 133, 222
BspACI CCGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 63, 183
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 3 cut(s) 44, 128, 141
BspQI GCTCTTC 1 cut(s) 321
BssMI GATC 3 cut(s) 36, 133, 222
Bst4CI ACNGT 2 cut(s) 28, 206
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 39, 136, 225
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 3 cut(s) 36, 133, 222
BstV2I GAAGAC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 63, 183
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 235
CciI TCATGA 1 cut(s) 415
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 171
CviAII CATG 1 cut(s) 416
CviJI RGCY 3 cut(s) 63, 183, 237
CviKI_1 RGCY 3 cut(s) 63, 183, 237
DpnI GATC 3 cut(s) 38, 135, 224
DpnII GATC 3 cut(s) 36, 133, 222
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 171
FaeI CATG 1 cut(s) 419
FaiI YATR 9 cut(s) 141, 167, 180, 258, 277, 375, 403, 417, 426
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 415
FokI GGATG 1 cut(s) 183
GlaI GCGC 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 63, 183
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 7, 69
Hpy188III TCNNGA 2 cut(s) 200, 416
Hpy8I GTNNAC 2 cut(s) 7, 69
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 28, 206
HpyCH4IV ACGT 2 cut(s) 71, 366
HpySE526I ACGT 2 cut(s) 71, 366
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 36, 133, 222
LguI GCTCTTC 1 cut(s) 321
LpnPI CCDG 5 cut(s) 77, 213, 219, 297, 305
LweI GCATC 1 cut(s) 4
MaeII ACGT 2 cut(s) 71, 366
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 38, 135, 224
MboI GATC 3 cut(s) 36, 133, 222
MboII GAAGA 3 cut(s) 232, 308, 421
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 99, 157
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 1 cut(s) 221
MseI TTAA 2 cut(s) 102, 156
NdeII GATC 3 cut(s) 36, 133, 222
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 135
PagI TCATGA 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 102, 156
Sau3AI GATC 3 cut(s) 36, 133, 222
Sau96I GGNCC 1 cut(s) 171
SduI GDGCHC 1 cut(s) 316
SetI ASST 2 cut(s) 74, 369
SfaNI GCATC 1 cut(s) 4
SgeI CNNG 9 cut(s) 76, 139, 212, 224, 246, 296, 332, 377, 428
SinI GGWCC 1 cut(s) 171
Sse9I AATT 2 cut(s) 99, 157
SsiI CCGC 1 cut(s) 131
TaaI ACNGT 2 cut(s) 28, 206
TaiI ACGT 2 cut(s) 74, 369
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 99, 157
Tru1I TTAA 2 cut(s) 102, 156
Tru9I TTAA 2 cut(s) 102, 156
TscAI CASTG 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 232
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.