Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Forward (+)

61067408 .. 61070309

Gene Structure 2902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAACACAGATGCCATTAGAACTGTTGTTGGGATCATTGGTAATGCCATCTCTTTCGGCTTGTTTACGTCCCCAATCCCAACATTTGTAAAGATAATTAAGGACAAATCAGTTGGAGATTTCAAGGCCGATCCTTATGTAGCAACTTTGCTTAATTGTGCTATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGATAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATGTTTCAATCTTTCTCTTATATTCTCCTGCCCAAAAACGGCGAAAAATCATCAGTGCTCTTCTGGTTGAAGCAATCTTTTTTGCCGTTGTGGTTTTTATTACTATTCACGTTTTCCATACCACTAAAGACAGGTCTATGATAATTGGGATTTTGTGTATTATCTTCAATATCATTATGTATGCATCACCCTTAACAGTCATGAAAATGGTCATCAAGACAAAAAGTGTCAAGTACATGCCATTTGCCCTCTCGCTCGCCAACTTTTGCAATGGAGTTGTCTGGTCTATTTATGCACTCCTCAAGTTTGACCCCTATGTTCTGATTCCTAATGGTTTGGGATCGCTTTCGGGCCTGGTGCAACTCATATTGTATGGCACTTACTACAGAACCACTAACTGGGATGATAACGATGAAAAGCCAAAACCTGAAGTTGAACTCCCTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

235

Amino Acids

26.25

Weight (kDa)

9.02

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	1.3e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	1.4e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AclWI	GGATC	3 cut(s)	44, 128, 604
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	294, 654
AgsI	TTSAA	5 cut(s)	127, 264, 326, 424, 692
AjnI	CCWGG	1 cut(s)	609
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	44, 128, 604
AoxI	GGCC	3 cut(s)	129, 181, 607
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	171, 607
AsuHPI	GGTGA	2 cut(s)	16, 435
AvaII	GGWCC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	316
BccI	CCATC	2 cut(s)	59, 204
BceAI	ACGGC	2 cut(s)	311, 326
BciT130I	CCWGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	171, 607
BmrFI	CCNGG	1 cut(s)	611
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	4, 449
BmuI	ACTGGG	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 654
Bse1I	ACTGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	196, 664
BseLI	CCNNNNNNNGG	2 cut(s)	294, 654
BseMI	GCAATG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	2 cut(s)	200, 545
BshFI	GGCC	3 cut(s)	131, 183, 609
BsiHKAI	GWGCWC	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	294, 654
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	131, 183, 609
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	36, 133, 222, 596
BspANI	GGCC	3 cut(s)	131, 183, 609
BspHI	TCATGA	1 cut(s)	456
BspPI	GGATC	3 cut(s)	44, 128, 604
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	659
BssMI	GATC	4 cut(s)	36, 133, 222, 596
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	2 cut(s)	28, 454
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	235, 513
BstF5I	GGATG	2 cut(s)	196, 664
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	39, 136, 225, 599
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	36, 133, 222, 596
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	640
BsuRI	GGCC	3 cut(s)	131, 183, 609
BtsCI	GGATG	2 cut(s)	196, 664
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	235, 513
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	171, 607
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	2 cut(s)	457, 493
CviJI	RGCY	6 cut(s)	63, 131, 183, 237, 609, 676
CviKI_1	RGCY	6 cut(s)	63, 131, 183, 237, 609, 676
CviQI	GTAC	1 cut(s)	490
DpnI	GATC	4 cut(s)	38, 135, 224, 598
DpnII	GATC	4 cut(s)	36, 133, 222, 596
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	2 cut(s)	460, 496
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	456, 492
FokI	GGATG	2 cut(s)	183, 671
GlaI	GCGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	131, 183, 609
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	460, 496
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	580
HphI	GGTGA	2 cut(s)	16, 435
Hpy166II	GTNNAC	2 cut(s)	7, 69
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	3 cut(s)	200, 457, 472
Hpy8I	GTNNAC	2 cut(s)	7, 69
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	2 cut(s)	28, 454
HpyCH4IV	ACGT	2 cut(s)	71, 366
HpyCH4V	TGCA	4 cut(s)	440, 525, 551, 616
HpySE526I	ACGT	2 cut(s)	71, 366
Hsp92II	CATG	2 cut(s)	460, 496
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	36, 133, 222, 596
LguI	GCTCTTC	1 cut(s)	321
LweI	GCATC	2 cut(s)	4, 449
MaeII	ACGT	2 cut(s)	71, 366
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	38, 135, 224, 598
MboI	GATC	4 cut(s)	36, 133, 222, 596
MboII	GAAGA	3 cut(s)	232, 308, 412
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	99, 157, 399
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	221, 515, 566
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	3 cut(s)	102, 156, 449
MslI	CAYNNNNRTG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	611
NdeII	GATC	4 cut(s)	36, 133, 222, 596
NlaIII	CATG	2 cut(s)	460, 496
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspPI	GGNCC	2 cut(s)	171, 607
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	102, 156, 449
Sau3AI	GATC	4 cut(s)	36, 133, 222, 596
Sau96I	GGNCC	2 cut(s)	171, 607
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	4 cut(s)	74, 369, 392, 685
SfaNI	GCATC	2 cut(s)	4, 449
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	99, 157, 399
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	2 cut(s)	28, 454
TaiI	ACGT	2 cut(s)	74, 369
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	99, 157, 399
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	3 cut(s)	102, 156, 449
Tru9I	TTAA	3 cut(s)	102, 156, 449
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	232, 473, 684
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.