Rw2G037190

sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
61264516 .. 61267418
2903 bp
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UTR
Exon/CDS
Intron
Rw2G037190.1

Sequence Viewer

Length: 636 bp
ATGGTGAACACAGATGCCATTAGAACTGTTGTTGGGATCATTGGTAATGCCATCTCTTTCGGCTTGTTTACGTCCCCAATCCCAACATTTGTAAAGATAATTAAGGACAAATCAGTTGGAGATTTCAAGGCCGATCCTTATGTAGCAACTTTGCTTAATTGTGCTATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGATAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATGTTTCAATCTTTCTCTTATATTCTCCTGCCCAAAAACGGCGAAAAATCATCAGTGCTCTTCTGGTTGAAGCAATCTTTTTTGCCGTTGTGGTTTTTATTACTATTCACGTTTTCCATACCACTAAAGACAGGTCTATGATAATTGGGATTTTTGTCAAGTACATGCCATTTGCCCTCTCGCTCGCCAACTTTTGCAATGGAGTTGTCTGGTCTATTTATGCACTCCTCAAGTTTGACCCCTATGTTCTGATTCCTAATGGTTTGGGATCGCTTTCGGGCCTGGTGCAACTCATATTGTATGGCACTTACTACAGAACCACTAACTGGGATGATAACGATGAAAAGCCAAAACCTGAAGTTGAACTCCCTAAAGTTTAG

Protein Analysis

211

Amino Acids

23.55

Weight (kDa)

8.45

Isoelectric Point (pI)

21.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 10 - 97 1e-22 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 137 - 192 1.9e-12 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 582
AclWI GGATC 3 cut(s) 44, 128, 532
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 294, 582
AgsI TTSAA 4 cut(s) 127, 264, 326, 620
AjnI CCWGG 1 cut(s) 537
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 3 cut(s) 44, 128, 532
AoxI GGCC 3 cut(s) 129, 181, 535
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 171, 535
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 316
BccI CCATC 2 cut(s) 59, 204
BceAI ACGGC 2 cut(s) 311, 326
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 568
BfoI RGCGCY 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 171, 535
BmrFI CCNGG 1 cut(s) 539
BmrI ACTGGG 1 cut(s) 592
BmsI GCATC 1 cut(s) 4
BmuI ACTGGG 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 582
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 539
BseGI GGATG 2 cut(s) 196, 592
BseLI CCNNNNNNNGG 2 cut(s) 294, 582
BseMI GCAATG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 200, 473
BshFI GGCC 3 cut(s) 131, 183, 537
BsiHKAI GWGCWC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 294, 582
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 3 cut(s) 131, 183, 537
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 4 cut(s) 36, 133, 222, 524
BspANI GGCC 3 cut(s) 131, 183, 537
BspPI GGATC 3 cut(s) 44, 128, 532
BspQI GCTCTTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 460
BsrI ACTGG 1 cut(s) 587
BssMI GATC 4 cut(s) 36, 133, 222, 524
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 235, 441
BstF5I GGATG 2 cut(s) 196, 592
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 4 cut(s) 39, 136, 225, 527
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 4 cut(s) 36, 133, 222, 524
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 568
BsuRI GGCC 3 cut(s) 131, 183, 537
BtsCI GGATG 2 cut(s) 196, 592
BtsIMutI CAGTG 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 235, 441
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 171, 535
Csp6I GTAC 1 cut(s) 418
CviAII CATG 1 cut(s) 421
CviJI RGCY 6 cut(s) 63, 131, 183, 237, 537, 604
CviKI_1 RGCY 6 cut(s) 63, 131, 183, 237, 537, 604
CviQI GTAC 1 cut(s) 418
DpnI GATC 4 cut(s) 38, 135, 224, 526
DpnII GATC 4 cut(s) 36, 133, 222, 524
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 633
EcoRII CCWGG 1 cut(s) 537
FaeI CATG 1 cut(s) 424
FaqI GGGAC 1 cut(s) 58
FatI CATG 1 cut(s) 420
FokI GGATG 2 cut(s) 183, 599
GlaI GCGC 1 cut(s) 232
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 3 cut(s) 131, 183, 537
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 424
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 1 cut(s) 508
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 7, 69
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 7, 69
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 71, 366
HpyCH4V TGCA 3 cut(s) 453, 479, 544
HpySE526I ACGT 2 cut(s) 71, 366
Hsp92II CATG 1 cut(s) 424
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 4 cut(s) 36, 133, 222, 524
LguI GCTCTTC 1 cut(s) 321
LweI GCATC 1 cut(s) 4
MaeII ACGT 2 cut(s) 71, 366
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 38, 135, 224, 526
MboI GATC 4 cut(s) 36, 133, 222, 524
MboII GAAGA 2 cut(s) 232, 308
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 3 cut(s) 99, 157, 399
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 3 cut(s) 221, 443, 494
MseI TTAA 2 cut(s) 102, 156
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
NdeII GATC 4 cut(s) 36, 133, 222, 524
NlaIII CATG 1 cut(s) 424
NspI RCATGY 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 508
PflMI CCANNNNNTGG 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspPI GGNCC 2 cut(s) 171, 535
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 102, 156
Sau3AI GATC 4 cut(s) 36, 133, 222, 524
Sau96I GGNCC 2 cut(s) 171, 535
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 1 cut(s) 316
SetI ASST 4 cut(s) 74, 369, 392, 613
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 568
SinI GGWCC 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 3 cut(s) 99, 157, 399
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 2 cut(s) 74, 369
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 99, 157, 399
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 2 cut(s) 102, 156
Tru9I TTAA 2 cut(s) 102, 156
TscAI CASTG 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 232, 612
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 171
XceI RCATGY 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.