Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Forward (+)

55986118 .. 55993515

Gene Structure 7398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCATAGCTACGCTCAAACCTCTTATAAATGTCATCATTGCTCTTGTGATTGAAGTTTTCTGCCTTCTTCTTGTTGCTCTCGCAATTACCATTCCCTCATATCGTCCTTCAGTCCGCTGCAGGATTCTCGACTACTTATGCGTTCTCTCCAATGTTATTATGTATGGGTCACCCTTAACAGTCATGGTGATGACATATGGTTTGGGATCAGCTTTAGGGTTGGTGCAACTCATTCTTTACGCCCACTACAACAAAACATCGCAATGGGATGATGAAAATGTTAAAAAGCCGAGAGCTCGAGGGGCAAGCCTAGACTTGCTGTTTAAGGATGGTCTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

114

Amino Acids

12.6

Weight (kDa)

8.49

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	3 cut(s)	11, 215, 299
AluI	AGCT	3 cut(s)	11, 215, 299
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AsuHPI	GGTGA	2 cut(s)	165, 202
AvaI	CYCGRG	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	326
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	39, 272
BseGI	GGATG	2 cut(s)	277, 337
BseMI	GCAATG	2 cut(s)	39, 272
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	5
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	39, 272
BssMI	GATC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	310
BstEII	GGTNACC	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	277, 337
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	277, 337
Cac8I	GCNNGC	1 cut(s)	310
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	6 cut(s)	5, 11, 215, 292, 299, 312
CviKI_1	RGCY	6 cut(s)	5, 11, 215, 292, 299, 312
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	341
Eco53kI	GAGCTC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	300
Eco91I	GGTNACC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	1 cut(s)	190
FaiI	YATR	9 cut(s)	8, 29, 103, 142, 164, 168, 188, 199, 201
FatI	CATG	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	2 cut(s)	165, 202
Hpy188III	TCNNGA	2 cut(s)	131, 338
HpyAV	CCTTC	2 cut(s)	77, 120
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	123, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	209
LpnPI	CCDG	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	171
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	33, 109, 296
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	179, 285, 327
MslI	CAYNNNNRTG	2 cut(s)	191, 265
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	122
PsiI	TTATAA	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	300
PstI	CTGCAG	1 cut(s)	125
RseI	CAYNNNNRTG	2 cut(s)	191, 265
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	3 cut(s)	179, 285, 327
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	4 cut(s)	13, 25, 217, 301
SfcI	CTRYAG	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	191, 265
SmlI	CTYRAG	1 cut(s)	300
SmoI	CTYRAG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	132, 301, 339
TasI	AATT	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	179, 285, 327
Tru9I	TTAA	3 cut(s)	179, 285, 327
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	300
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.