Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010658

Physical Location & Seq

Genomic Coordinates Reverse (-)

11037149 .. 11038413

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G076100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGAATCTAGAAGCGATCAGAATCATTGTAGGCATTATCGGTAATGTCATCTCTTTCTTTTTGTTTACCTCCCCATTCACAACATTTTTGAAAATAATCAAGCAAAAATCAGTAGGAGAATTCAAGGCAGATCCTTATGTAGCAACATTGCTCAATTGTGCAATGTGGTCTTTCTATGGCATGCCCTTTGTCCATCCGGATAGCGTTCTTGTCGTTACAATCAACGGTTGTGGATTCGTTATCGAACTCATCTACATTGCCATCTTCTTAACATACTCATCTAACGCAAAGCGAAGGATTCTTATTGCTCTTCTGGTTGAAGTTATCTTCTTTGCTGTTGTGGTTTTCGTCACCCTGCACTTTCTCCATACCACTAAGGGCCGGTCTATGATAATTGGCATCTTGTGCATTGTCTTCAACATCATTATGTATGCCTCACCCTTGACAATCATGAAAATGGTCATCAAGACAAAAAGTGTGAAATATATGCCGTTTACCCTCTCTCTTGCTAACTTCTGCAATGGAATTGTCTGGCTCATCTATGCACTCATCAAATTTGATCCCTACATTTTGGTTCCCAATGGTTTGGGATCAATTTCCGGGTTGGTGCAGCTCATCCTATATGCCACCTACTACAAGACCACCAACTGGGATGAGGAGGATGAAAAACCAAAATCTGAGGTTCAACTCTCAGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

235

Amino Acids

26.4

Weight (kDa)

8.8

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62850 AT5G62850
fragaria_vesca	FvH4_6g35420
malus_domestica	MD14G1079800.v1.1
prunus_persica	Prupe.3G034900_v2.0.a1 Prupe.8G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146951 RchiOBHm_Chr7g0193781
rosa_laevigata	RLG00000004246 RLG00000020230
rosa_roxburghii	Rroxscaffold_2G00099830 Rroxscaffold_3G00261850
rosa_rugosa	Rorug02G0397700
rosa_samantha	Rh2AG454200 Rh2CG441300 Rh2DG475800 Rh7CG142400 Rh7DG140000
rosa_wichuraiana	Rw2G037090 Rw2G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccIII	TCCGGA	1 cut(s)	199
AclWI	GGATC	3 cut(s)	128, 557, 601
AcsI	RAATTY	2 cut(s)	122, 557
AfiI	CCNNNNNNNGG	1 cut(s)	651
AgsI	TTSAA	5 cut(s)	94, 127, 323, 421, 689
AluBI	AGCT	1 cut(s)	616
AluI	AGCT	1 cut(s)	616
AlwI	GGATC	3 cut(s)	128, 557, 601
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	2 cut(s)	122, 557
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	3 cut(s)	16, 346, 432
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	2 cut(s)	204, 272
BceAI	ACGGC	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	604
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
Bme1390I	CCNGG	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	604
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	411
BmuI	ACTGGG	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	604
BsaBI	GATNNNNATC	1 cut(s)	23
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	656
Bse3DI	GCAATG	4 cut(s)	149, 171, 258, 529
Bse8I	GATNNNNATC	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	199
BseGI	GGATG	4 cut(s)	196, 618, 661, 670
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMI	GCAATG	4 cut(s)	149, 171, 258, 529
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	1 cut(s)	625
BsgI	GTGCAG	2 cut(s)	344, 632
BshFI	GGCC	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	200, 385, 603
BslI	CCNNNNNNNGG	1 cut(s)	651
BsnI	GGCC	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	18, 133, 562, 593
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	673
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	579
BspPI	GGATC	3 cut(s)	128, 557, 601
BspQI	GCTCTTC	1 cut(s)	318
BsrDI	GCAATG	4 cut(s)	149, 171, 258, 529
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	656
BssAI	RCCGGY	1 cut(s)	384
BssMI	GATC	4 cut(s)	18, 133, 562, 593
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	3 cut(s)	378, 681, 694
BstF5I	GGATG	4 cut(s)	196, 618, 661, 670
BstKTI	GATC	4 cut(s)	21, 136, 565, 596
BstMBI	GATC	4 cut(s)	18, 133, 562, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	4 cut(s)	196, 618, 661, 670
Cac8I	GCNNGC	1 cut(s)	185
CciI	TCATGA	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	382
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	184, 454
CviJI	RGCY	3 cut(s)	384, 538, 616
CviKI_1	RGCY	3 cut(s)	384, 538, 616
DdeI	CTNAG	3 cut(s)	378, 681, 694
DpnI	GATC	4 cut(s)	20, 135, 564, 595
DpnII	GATC	4 cut(s)	18, 133, 562, 593
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	187, 457
FatI	CATG	2 cut(s)	183, 453
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	4 cut(s)	183, 605, 668, 677
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	3 cut(s)	200, 385, 603
Hin1II	CATG	2 cut(s)	187, 457
HinfI	GANTC	4 cut(s)	7, 24, 237, 301
HpaII	CCGG	3 cut(s)	200, 385, 603
HphI	GGTGA	3 cut(s)	16, 346, 432
Hpy166II	GTNNAC	2 cut(s)	69, 498
Hpy188I	TCNGA	3 cut(s)	23, 682, 697
Hpy188III	TCNNGA	4 cut(s)	11, 200, 454, 469
Hpy8I	GTNNAC	2 cut(s)	69, 498
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	6 cut(s)	164, 361, 411, 522, 548, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	408
HpyF3I	CTNAG	3 cut(s)	378, 681, 694
Hsp92II	CATG	2 cut(s)	187, 457
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	18, 133, 562, 593
LguI	GCTCTTC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	213, 302, 371, 398, 520, 616, 637
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	217, 352
MalI	GATC	4 cut(s)	20, 135, 564, 595
MboI	GATC	4 cut(s)	18, 133, 562, 593
MboII	GAAGA	4 cut(s)	259, 305, 322, 409
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	6 cut(s)	122, 157, 396, 528, 557, 597
MnlI	CCTC	6 cut(s)	82, 448, 512, 652, 655, 676
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	428, 458
MspI	CCGG	3 cut(s)	200, 385, 603
MspR9I	CCNGG	1 cut(s)	604
MunI	CAATTG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	408
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	4 cut(s)	18, 133, 562, 593
NlaIII	CATG	2 cut(s)	187, 457
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	453
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	7, 24, 237, 301
PflMI	CCANNNNNTGG	1 cut(s)	651
PkrI	GCNGC	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	133
RseI	CAYNNNNRTG	2 cut(s)	428, 458
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	4 cut(s)	18, 133, 562, 593
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	604
SetI	ASST	4 cut(s)	74, 618, 635, 687
SfaNI	GCATC	1 cut(s)	411
SmiMI	CAYNNNNRTG	2 cut(s)	428, 458
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	6 cut(s)	122, 157, 396, 528, 557, 597
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	602
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	246
TasI	AATT	6 cut(s)	122, 157, 396, 528, 557, 597
TfiI	GAWTC	4 cut(s)	7, 24, 237, 301
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	470, 681
Van91I	CCANNNNNTGG	1 cut(s)	651
XapI	RAATTY	2 cut(s)	122, 557
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.