Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Reverse (-)

25294954 .. 25296896

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCGATTCGTTTCAGCTCAACCATCGTTGCTGCTTCAGTCAATTTCAAAAGCTCGAAGAATTTGAACATTAATCGATCTCGGAACTGCAGATTCTCTGTCCGAAGTTGCGTGTCTGAATCCCAACATGCGCACAAGCTAGTTTTGGAAGTAAAAGAACGGCTTGCGAAAGATTGTACTAGTCTCCCACTTGGCAAATATGGAAGAGATGATGAGGATATGATCCTCTGGTTTTTGAAAGATCGCAGATTTTCTGTTGATGAAGCCATTGGAAAGCTAACTAAAGCTATTAAATGGCGTCATGAGTTCAAGGTAGATGAGCTTTCTGAAGATTCTATTAAAGCAGCTACTGACACTGGAAAAGCCTATGTACATGGTTTTCTAGATGTTAAAGGTCGGCCAGTGGTTATTGTAGCTCCTGCAAAGCACATCCCCGGGCTGCTTGATCCAATAGAAGATGAAAAGCTTTGTGTGTTCTTACTTGAAAAGGCTTTAAGTAAGTTACCAGCAGGACAACACAAGATACTTGGGATATTTGATCTCCGTGGATTCGGATCTCAGAACGCAGATCTTAAGTTCTTGACTTTCCTGTTTGACGTATTTTACTATTACTATCCAAGCCGATTGGATGAAGTCCTTTTTGTAGATGCTCCATTCATATTTCAGCCAATTTGGCAATTCACTAAACCGTTGGTGAAGCAATACGCTTCTCTGGTCAAGTTTTGCTCAGCAGAGACCGTCAGAAAGGAGTACTTTACTGAAGAAACATTACCATCAAATTTCCGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

263

Amino Acids

30.15

Weight (kDa)

8.95

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	119 - 261	7.3e-24	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	132 - 259	2.4e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	783
AclWI	GGATC	3 cut(s)	217, 440, 562
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	2 cut(s)	61, 778
AcuI	CTGAAG	3 cut(s)	21, 348, 780
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	3 cut(s)	178, 372, 752
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	5 cut(s)	49, 67, 238, 310, 485
AhlI	ACTAGT	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	188, 728
AlwI	GGATC	3 cut(s)	217, 440, 562
AlwNI	CAGNNNCTG	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	783
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	32, 344, 439
ApoI	RAATTY	2 cut(s)	61, 778
AseI	ATTAAT	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	133
AsuC2I	CCSGG	2 cut(s)	435, 436
AsuHPI	GGTGA	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	434
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
BbvI	GCAGC	3 cut(s)	19, 356, 426
BccI	CCATC	2 cut(s)	32, 781
BceAI	ACGGC	1 cut(s)	176
BcnI	CCSGG	2 cut(s)	435, 436
BcoDI	GTCTC	2 cut(s)	188, 728
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	3 cut(s)	140, 180, 383
BfmI	CTRYAG	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	572
BglI	GCCNNNNNGGC	1 cut(s)	673
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	3 cut(s)	33, 345, 440
BlpI	GCTNAGC	1 cut(s)	727
BlsI	GCNGC	3 cut(s)	34, 346, 441
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	2 cut(s)	435, 436
BmeT110I	CYCGRG	1 cut(s)	434
BmrFI	CCNGG	2 cut(s)	435, 436
BmsI	GCATC	1 cut(s)	637
Bpu1102I	GCTNAGC	1 cut(s)	727
BpuMI	CCSGG	2 cut(s)	435, 436
Bsa29I	ATCGAT	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	553
BsaHI	GRCGYC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	3 cut(s)	433, 434, 544
BsaWI	WCCGGW	1 cut(s)	783
Bse1I	ACTGG	2 cut(s)	361, 401
Bse8I	GATNNNNATC	1 cut(s)	553
BseAI	TCCGGA	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	3 cut(s)	433, 434, 544
BseGI	GGATG	2 cut(s)	429, 634
BseJI	GATNNNNATC	1 cut(s)	553
BseMII	CTCAG	2 cut(s)	572, 741
BseNI	ACTGG	2 cut(s)	361, 401
BseXI	GCAGC	3 cut(s)	19, 356, 426
BshFI	GGCC	1 cut(s)	400
BshVI	ATCGAT	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	435, 784
BsmAI	GTCTC	2 cut(s)	188, 728
BsnI	GGCC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	728
BsoBI	CYCGRG	1 cut(s)	434
Bsp13I	TCCGGA	1 cut(s)	783
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
Bsp1720I	GCTNAGC	1 cut(s)	727
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	2 cut(s)	571, 740
BspDI	ATCGAT	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	783
BspHI	TCATGA	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	92
BspPI	GGATC	3 cut(s)	217, 440, 562
BspTI	CTTAAG	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	728
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	361, 401
BssECI	CCNNGG	3 cut(s)	433, 434, 544
BssMI	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
BssNI	GRCGYC	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	690, 739
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	298
BstAFI	CTTAAG	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	558, 727
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	429, 634
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	7 cut(s)	80, 225, 244, 448, 541, 557, 571
BstMAI	GTCTC	2 cut(s)	188, 728
BstMBI	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	433, 434
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	19, 356, 426
BstX2I	RGATCY	2 cut(s)	554, 568
BstYI	RGATCY	2 cut(s)	554, 568
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	400
BsuTUI	ATCGAT	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	429, 634
BtsIMutI	CAGTG	2 cut(s)	354, 408
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	350
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	133
Cfr9I	CCCGGG	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	76
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	177, 371, 751
CviAII	CATG	3 cut(s)	128, 302, 374
CviQI	GTAC	3 cut(s)	177, 371, 751
DdeI	CTNAG	2 cut(s)	558, 727
DpnI	GATC	7 cut(s)	79, 224, 243, 447, 540, 556, 570
DpnII	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
EaeI	YGGCCR	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	728
Eco57I	CTGAAG	3 cut(s)	21, 348, 780
Eco88I	CYCGRG	1 cut(s)	434
FaeI	CATG	3 cut(s)	131, 305, 377
FaiI	YATR	7 cut(s)	129, 201, 221, 303, 369, 375, 659
FalI	AAGNNNNNCTT	4 cut(s)	147, 179, 737, 769
FatI	CATG	3 cut(s)	127, 301, 373
Fnu4HI	GCNGC	3 cut(s)	33, 345, 440
FokI	GGATG	2 cut(s)	416, 641
Fsp4HI	GCNGC	3 cut(s)	33, 345, 440
FspAI	RTGCGCAY	1 cut(s)	132
FspBI	CTAG	3 cut(s)	140, 180, 383
FspI	TGCGCA	1 cut(s)	132
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	33, 345, 440
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	2 cut(s)	435, 784
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	131, 305, 377
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	5 cut(s)	7, 93, 119, 332, 549
HpaII	CCGG	2 cut(s)	435, 784
HphI	GGTGA	1 cut(s)	706
Hpy188I	TCNGA	7 cut(s)	84, 104, 118, 328, 554, 561, 743
Hpy188III	TCNNGA	4 cut(s)	302, 383, 580, 784
HpyCH4III	ACNGT	2 cut(s)	690, 739
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	2 cut(s)	90, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	2 cut(s)	558, 727
HpySE526I	ACGT	1 cut(s)	597
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	3 cut(s)	131, 305, 377
HspAI	GCGC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	783
Kzo9I	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
LmnI	GCTCC	3 cut(s)	421, 655, 786
LpnPI	CCDG	9 cut(s)	214, 342, 414, 432, 448, 495, 519, 602, 698
Lsp1109I	GCAGC	3 cut(s)	19, 356, 426
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	3 cut(s)	140, 180, 383
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	1 cut(s)	501
MalI	GATC	7 cut(s)	79, 224, 243, 447, 540, 556, 570
MboI	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
MboII	GAAGA	5 cut(s)	70, 216, 341, 467, 773
MflI	RGATCY	2 cut(s)	554, 568
MluCI	AATT	5 cut(s)	43, 61, 669, 677, 778
MnlI	CCTC	2 cut(s)	208, 236
MroI	TCCGGA	1 cut(s)	783
MseI	TTAA	6 cut(s)	72, 291, 339, 390, 494, 573
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	2 cut(s)	435, 784
MspR9I	CCNGG	2 cut(s)	435, 436
MwoI	GCNNNNNNNGC	1 cut(s)	673
NciI	CCSGG	2 cut(s)	435, 436
NdeII	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
NlaIII	CATG	3 cut(s)	131, 305, 377
NsbI	TGCGCA	1 cut(s)	132
NspI	RCATGY	1 cut(s)	131
PagI	TCATGA	1 cut(s)	301
PfeI	GAWTC	5 cut(s)	7, 93, 119, 332, 549
PkrI	GCNGC	3 cut(s)	34, 346, 441
PshBI	ATTAAT	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	554, 568
RsaI	GTAC	3 cut(s)	178, 372, 752
RsaNI	GTAC	3 cut(s)	177, 371, 751
SaqAI	TTAA	6 cut(s)	72, 291, 339, 390, 494, 573
SatI	GCNGC	3 cut(s)	33, 345, 440
Sau3AI	GATC	7 cut(s)	77, 222, 241, 445, 538, 554, 568
ScaI	AGTACT	1 cut(s)	752
ScrFI	CCNGG	2 cut(s)	435, 436
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	88
SmaI	CCCGGG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	5 cut(s)	43, 61, 669, 677, 778
SspMI	CTAG	3 cut(s)	140, 180, 383
StyD4I	CCNGG	2 cut(s)	433, 434
TaaI	ACNGT	2 cut(s)	690, 739
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	3 cut(s)	5, 56, 76
TasI	AATT	5 cut(s)	43, 61, 669, 677, 778
TatI	WGTACW	3 cut(s)	176, 370, 750
TfiI	GAWTC	5 cut(s)	7, 93, 119, 332, 549
Tru1I	TTAA	6 cut(s)	72, 291, 339, 390, 494, 573
Tru9I	TTAA	6 cut(s)	72, 291, 339, 390, 494, 573
TscAI	CASTG	2 cut(s)	361, 408
TseI	GCWGC	3 cut(s)	32, 344, 439
TspDTI	ATGAA	4 cut(s)	276, 474, 645, 646
TspGWI	ACGGA	1 cut(s)	533
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	2 cut(s)	361, 408
Vha464I	CTTAAG	1 cut(s)	572
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	2 cut(s)	61, 778
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	1 cut(s)	131
XmaI	CCCGGG	1 cut(s)	434
XspI	CTAG	3 cut(s)	140, 180, 383
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.