FvH4_1g22320

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004426
Physical Location & Seq
Forward (+)
14192657 .. 14194750
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22320.t1

Sequence Viewer

Length: 585 bp
ATGGAGAAGAGATGTCTTATGCAACTGGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAAACCATCGAAGTCTTCCAGTAGGCAAAAATGGAAGAGATGATGAAGACTTGATTCTCTGGTTTCTAAAGGACCGAAAATTTTCGGTACAAGAGTCGGTTGAAAAGTTGCACAAAGCAATTAAATGGCGTCAACAACTTGGAGTGTCTGAGTTGTCAGAAGATTCAGTGAAGAGCATTGCTGAAACTGGAAAAGCTTATTTGCATGACTTTCTGGATGTTAATGGTAGACCAGTTCTCATAGTGGATGCTGCTAAGCATTTTCCTGGTACTACAGCTTCCATTAAGATTTTTGATGCCCTCTCAGAGTTGATTCTTGATCTGTTGCAGTTTGATGCATTTTACTATTATTACCCAAGGCGATTGGGCCAAGTCCTGTTTGTGGATGCTCCATTTATATTCAAGCCAATTTGGCAGCTTGCGAAGCCCTTGTTGAAATCATATGCTTCATTGGTGAGGTTTTGCTCTGTGGAGACTGTCAGGAAGGAATATTTTACAGAAGCAACACTACCGGCTAAATTTAGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

195

Amino Acids

22.54

Weight (kDa)

8.73

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 131 - 191 5.4e-08 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 283
AcsI RAATTY 2 cut(s) 134, 572
AcyI GRCGYC 1 cut(s) 184
AfaI GTAC 2 cut(s) 144, 325
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 158, 457, 490
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 4 cut(s) 49, 251, 332, 472
AluI AGCT 4 cut(s) 49, 251, 332, 472
Alw26I GTCTC 1 cut(s) 521
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 305, 469
ApoI RAATTY 2 cut(s) 134, 572
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 127, 421
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 134, 167
BarI GAAGNNNNNNTAC 4 cut(s) 316, 348, 546, 578
BbsI GAAGAC 2 cut(s) 62, 108
BbvI GCAGC 2 cut(s) 292, 481
BccI CCATC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 327
BglI GCCNNNNNGGC 1 cut(s) 466
BisI GCNGC 2 cut(s) 306, 470
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 2 cut(s) 307, 471
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 421
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 4 cut(s) 292, 340, 379, 430
BpiI GAAGAC 2 cut(s) 62, 108
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 4 cut(s) 30, 74, 247, 287
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 3 cut(s) 277, 307, 445
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 195, 372
BseNI ACTGG 4 cut(s) 30, 74, 247, 287
BseXI GCAGC 2 cut(s) 292, 481
BshFI GGCC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 521
BsnI GGCC 1 cut(s) 423
Bsp143I GATC 1 cut(s) 373
Bsp1720I GCTNAGC 1 cut(s) 309
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 2 cut(s) 196, 371
BspQI GCTCTTC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 4 cut(s) 30, 74, 247, 287
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 3 cut(s) 2, 85, 221
BstACI GRCGYC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 3 cut(s) 204, 309, 358
BstF5I GGATG 3 cut(s) 277, 307, 445
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 466, 478
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 292, 481
BstV2I GAAGAC 2 cut(s) 62, 108
BsuRI GGCC 1 cut(s) 423
BtsCI GGATG 3 cut(s) 277, 307, 445
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 127, 421
CseI GACGC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 143, 324
CviAII CATG 1 cut(s) 260
CviJI RGCY 8 cut(s) 49, 251, 332, 423, 460, 472, 481, 569
CviKI_1 RGCY 8 cut(s) 49, 251, 332, 423, 460, 472, 481, 569
CviQI GTAC 2 cut(s) 143, 324
DdeI CTNAG 3 cut(s) 204, 309, 358
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 2, 85, 221
EarI CTCTTC 3 cut(s) 2, 85, 221
Eco130I CCWWGG 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 1 cut(s) 263
FaiI YATR 6 cut(s) 20, 261, 296, 452, 496, 498
FatI CATG 1 cut(s) 259
FauNDI CATATG 1 cut(s) 496
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 306, 470
FokI GGATG 3 cut(s) 284, 314, 452
Fsp4HI GCNGC 2 cut(s) 306, 470
GluI GCNGC 2 cut(s) 306, 470
HaeIII GGCC 1 cut(s) 423
HapII CCGG 1 cut(s) 566
HgaI GACGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 1 cut(s) 263
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HindIII AAGCTT 2 cut(s) 47, 249
HinfI GANTC 4 cut(s) 109, 149, 218, 367
HpaII CCGG 1 cut(s) 566
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 2 cut(s) 188, 284
Hpy188I TCNGA 3 cut(s) 205, 214, 361
Hpy188III TCNNGA 3 cut(s) 269, 371, 535
Hpy8I GTNNAC 2 cut(s) 188, 284
HpyAV CCTTC 2 cut(s) 34, 532
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4V TGCA 5 cut(s) 22, 166, 259, 382, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 466, 478
HpyF3I CTNAG 3 cut(s) 204, 309, 358
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 373
LguI GCTCTTC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 2 cut(s) 292, 481
LweI GCATC 4 cut(s) 292, 340, 379, 430
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 6 cut(s) 19, 62, 102, 113, 227, 238
MluCI AATT 4 cut(s) 134, 174, 462, 572
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 365, 504
Mph1103I ATGCAT 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 3 cut(s) 177, 276, 339
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 466, 478
NdeI CATATG 1 cut(s) 496
NdeII GATC 1 cut(s) 373
NlaIII CATG 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 109, 218, 367
PkrI GCNGC 2 cut(s) 307, 471
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspPI GGNCC 2 cut(s) 127, 421
RsaI GTAC 2 cut(s) 144, 325
RsaNI GTAC 2 cut(s) 143, 324
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 3 cut(s) 177, 276, 339
SatI GCNGC 2 cut(s) 306, 470
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 2 cut(s) 127, 421
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 321
SetI ASST 5 cut(s) 51, 253, 334, 474, 515
SfaNI GCATC 4 cut(s) 292, 340, 379, 430
SfcI CTRYAG 1 cut(s) 327
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 4 cut(s) 134, 174, 462, 572
SspI AATATT 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 532
TaqI TCGA 1 cut(s) 64
TaqII GACCGA 1 cut(s) 144
TasI AATT 4 cut(s) 134, 174, 462, 572
TfiI GAWTC 3 cut(s) 109, 218, 367
Tru1I TTAA 3 cut(s) 177, 276, 339
Tru9I TTAA 3 cut(s) 177, 276, 339
TscAI CASTG 1 cut(s) 228
TseI GCWGC 2 cut(s) 305, 469
TspDTI ATGAA 2 cut(s) 114, 492
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 134, 572
XmiI GTMKAC 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.