Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Forward (+)

14582944 .. 14585134

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGCTCCGTATCTGCAACCCTCTTCGTCGTCTTCCTTTTCTCTCCAATTGCTCCTATCAAATTAAATCCTCCCAAGTTCGAAGGTTCTCTGTTCGGAGCTGCCGCTTAGACCCCAACGAATCACACAAGGTGCATGATCATGCTGAGAATGAGAAGCTCTGCGTGTTTTTGATTGAGAAGGCATTGAGTGCTCTTCCAGAAGGGACAGAAGACATACTTGGAATCTTTGACCTACGAGGCTTTGGTACAGAGAATGCAGATTTAAGTTTCATAACATTTTTGTTTGATGTTTTCTACTATTATTATCCAAAGCGATTGGGCCAAGTCCTCTTTGTGGAAGCTCCATTTATATTCAAGCCAATTTGGCAGCTGGCCAAGCCTTTGTTAAAATCATATGCTTCGTTGGTGAGGTTTTGCTCCGTGGAGACTGTCAGGAAGGAATATTTTACAGATGCAACGGTGCCAGCCAATTTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

162

Amino Acids

18.77

Weight (kDa)

8.27

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AciI	CCGC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	133
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	5 cut(s)	7, 102, 160, 344, 373
AluI	AGCT	5 cut(s)	7, 102, 160, 344, 373
Alw21I	GWGCWC	2 cut(s)	9, 196
Alw26I	GTCTC	2 cut(s)	422, 474
AoxI	GGCC	2 cut(s)	322, 375
ApeKI	GCWGC	2 cut(s)	102, 370
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	421
AsuII	TTCGAA	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	26, 219
Bbv12I	GWGCWC	2 cut(s)	9, 196
BbvI	GCAGC	2 cut(s)	89, 382
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	422, 474
BglI	GCCNNNNNGGC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	103, 106, 371
BlsI	GCNGC	3 cut(s)	104, 107, 372
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	2 cut(s)	26, 219
Bpu14I	TTCGAA	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	89, 382
BshFI	GGCC	2 cut(s)	324, 377
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	2 cut(s)	9, 196
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	422, 474
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	324, 377
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	9, 196
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	324, 377
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	433, 463
Bst6I	CTCTTC	2 cut(s)	30, 201
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	375, 468
BstDEI	CTNAG	2 cut(s)	109, 147
BstDSI	CCRYGG	1 cut(s)	423
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	422, 474
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 367, 379
BstV1I	GCAGC	2 cut(s)	89, 382
BstV2I	GAAGAC	2 cut(s)	26, 219
BsuRI	GGCC	2 cut(s)	324, 377
BtgI	CCRYGG	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	375, 468
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	137, 143
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	109, 147
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DraIII	CACNNNGTG	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	30, 201
EarI	CTCTTC	2 cut(s)	30, 201
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	2 cut(s)	140, 146
FaiI	YATR	7 cut(s)	138, 144, 218, 275, 353, 397, 399
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	136, 142
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	103, 106, 371
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	103, 106, 371
GluI	GCNGC	3 cut(s)	103, 106, 371
HaeIII	GGCC	2 cut(s)	324, 377
Hin1II	CATG	2 cut(s)	140, 146
HinfI	GANTC	2 cut(s)	122, 225
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	2 cut(s)	200, 436
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	4 cut(s)	78, 175, 197, 433
HpyCH4III	ACNGT	2 cut(s)	433, 463
HpyCH4V	TGCA	4 cut(s)	18, 136, 260, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 367, 379
HpyF3I	CTNAG	2 cut(s)	109, 147
Hsp92II	CATG	2 cut(s)	140, 146
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	6 cut(s)	4, 12, 59, 99, 349, 425
LpnPI	CCDG	4 cut(s)	213, 359, 421, 480
Lsp1109I	GCAGC	2 cut(s)	89, 382
LweI	GCATC	1 cut(s)	445
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	17, 26, 188, 224
MfeI	CAATTG	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	9, 196
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	49, 63, 363, 472
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	5 cut(s)	33, 82, 233, 341, 405
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	66, 266, 389
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	373
MunI	CAATTG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	191, 367, 379
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	140, 146
NlaIV	GGNNCC	1 cut(s)	465
NspV	TTCGAA	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	122, 225
PkrI	GCNGC	3 cut(s)	104, 107, 372
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	66, 266, 389
SatI	GCNGC	3 cut(s)	103, 106, 371
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	322
SduI	GDGCHC	2 cut(s)	9, 196
SetI	ASST	9 cut(s)	9, 89, 104, 135, 162, 237, 346, 375, 416
SfaNI	GCATC	1 cut(s)	445
SfuI	TTCGAA	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	49, 63, 363, 472
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	1 cut(s)	446
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	433, 463
TaqI	TCGA	1 cut(s)	82
TasI	AATT	4 cut(s)	49, 63, 363, 472
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	122, 225
Tru1I	TTAA	3 cut(s)	66, 266, 389
Tru9I	TTAA	3 cut(s)	66, 266, 389
TseI	GCWGC	2 cut(s)	102, 370
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.