Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Reverse (-)

58059904 .. 58062403

Gene Structure 2500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004295

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGCTCCGCCTGTGTAATCCATTTCGTCACATTATTCCTCTTCCTTCAAATTACTCCAATCAAATTACATCTTCCTCCCGAGCTCGTAGCTTATCGGTTCGAAGCTCCCGCTTAGACCCCAACGAATCACGCAAGCTAGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATCATCAAAGTCTTCCAGTAGGCAAAAATGGAAGAGATGATGAGGACTTCATTCTCTGGTTTCTCAAGGACCGAAAATTTGCAGTCCAAGAATCAGTTGAAAAATTGCACAAGGCAATTAAATGGCGTCAAGAATTTGGCGTGTCTGAGTTGTCTCAAGATTCGGTGAAGAACATTGCTGAAACTGGAAAAGCTTATGTGCACGACTTTCTGGATGTTAATGGTAGACCAGTTCTTATAGTGGATGCTGCTAAGCATTTTCCTGCTGTGCATGATCCTGCTGAGAATGAGAAGCTTTGCGTATTTTTGATTGAGAAGGCATTGAGTGCCCTTCCTGACGGGAGAGAAGAAATACTCGGAATCTTTGATCTCCGAGGCTTCGGTACAGAGAATTCTGATATAAAGTTTATAACATTTTTGTTTGATGTATTCTACTATTATTACCCAAAGCGATTGGGCCAAGTCCTCTTCGTGGATGCTCCATTTATATTCAAACCTATTTGGCAGCTTGCAAAGCCCTTGTTGAAATCATATGCTTCAGTGGTGAGGTTTTGCTCTGCGGAGACTGTCAGGAAGGAATATTTTACAGAAGCAACACTACCGGCCAAATTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

264

Amino Acids

30.35

Weight (kDa)

8.3

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	118 - 260	1.1e-25	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	132 - 260	1.7e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	3 cut(s)	10, 112, 731
AclWI	GGATC	1 cut(s)	440
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	4 cut(s)	248, 305, 562, 779
AcuI	CTGAAG	1 cut(s)	693
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	51, 272, 664, 697
AluBI	AGCT	9 cut(s)	7, 86, 93, 108, 139, 163, 365, 466, 679
AluI	AGCT	9 cut(s)	7, 86, 93, 108, 139, 163, 365, 466, 679
Alw21I	GWGCWC	3 cut(s)	9, 88, 375
Alw26I	GTCTC	3 cut(s)	330, 728, 780
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	628, 774
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	419, 676
ApoI	RAATTY	4 cut(s)	248, 305, 562, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspS9I	GGNCC	2 cut(s)	241, 628
AsuHPI	GGTGA	2 cut(s)	349, 727
AsuII	TTCGAA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	241
BaeGI	GKGCMC	2 cut(s)	375, 502
BanII	GRGCYC	2 cut(s)	9, 88
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	3 cut(s)	9, 88, 375
BbvI	GCAGC	2 cut(s)	406, 688
BcoDI	GTCTC	3 cut(s)	330, 728, 780
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	420, 677
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	2 cut(s)	421, 678
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	241, 628
BmsI	GCATC	2 cut(s)	406, 637
BpiI	GAAGAC	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	3 cut(s)	185, 221, 312
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse118I	RCCGGY	1 cut(s)	772
Bse1I	ACTGG	3 cut(s)	188, 361, 401
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	3 cut(s)	391, 421, 652
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	309, 444
BseNI	ACTGG	3 cut(s)	188, 361, 401
BseSI	GKGCMC	2 cut(s)	375, 502
BseXI	GCAGC	2 cut(s)	406, 688
BshFI	GGCC	2 cut(s)	630, 776
BsiHKAI	GWGCWC	3 cut(s)	9, 88, 375
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	773
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	3 cut(s)	330, 728, 780
BsnI	GGCC	2 cut(s)	630, 776
BsoBI	CYCGRG	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	4 cut(s)	9, 88, 375, 502
Bsp143I	GATC	3 cut(s)	172, 445, 538
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	3 cut(s)	10, 112, 731
BspANI	GGCC	2 cut(s)	630, 776
BspCNI	CTCAG	2 cut(s)	310, 445
BspPI	GGATC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	772
BsrI	ACTGG	3 cut(s)	188, 361, 401
BssAI	RCCGGY	1 cut(s)	772
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	3 cut(s)	172, 445, 538
BssNI	GRCGYC	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	3 cut(s)	48, 199, 644
BstACI	GRCGYC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	137, 681
BstDEI	CTNAG	4 cut(s)	115, 318, 423, 453
BstF5I	GGATG	3 cut(s)	391, 421, 652
BstKTI	GATC	3 cut(s)	175, 448, 541
BstMAI	GTCTC	3 cut(s)	330, 728, 780
BstMBI	GATC	3 cut(s)	172, 445, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 685
BstSLI	GKGCMC	2 cut(s)	375, 502
BstV1I	GCAGC	2 cut(s)	406, 688
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	630, 776
BtsCI	GGATG	3 cut(s)	391, 421, 652
BtsIMutI	CAGTG	1 cut(s)	717
Cac8I	GCNNGC	2 cut(s)	137, 681
Cfr10I	RCCGGY	1 cut(s)	772
Cfr13I	GGNCC	2 cut(s)	241, 628
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	1 cut(s)	443
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	4 cut(s)	115, 318, 423, 453
DpnI	GATC	3 cut(s)	174, 447, 540
DpnII	GATC	3 cut(s)	172, 445, 538
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	3 cut(s)	48, 199, 644
EarI	CTCTTC	3 cut(s)	48, 199, 644
Ecl136II	GAGCTC	2 cut(s)	7, 86
Eco24I	GRGCYC	2 cut(s)	9, 88
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	2 cut(s)	7, 86
Eco57I	CTGAAG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	81
EcoICRI	GAGCTC	2 cut(s)	7, 86
EcoRI	GAATTC	1 cut(s)	562
EcoT38I	GRGCYC	2 cut(s)	9, 88
FaeI	CATG	1 cut(s)	446
FaiI	YATR	8 cut(s)	369, 410, 444, 572, 581, 659, 703, 705
FatI	CATG	1 cut(s)	442
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	420, 677
FokI	GGATG	3 cut(s)	398, 428, 659
FriOI	GRGCYC	2 cut(s)	9, 88
Fsp4HI	GCNGC	2 cut(s)	420, 677
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	420, 677
HaeIII	GGCC	2 cut(s)	630, 776
HapII	CCGG	1 cut(s)	773
HgaI	GACGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	446
HindIII	AAGCTT	3 cut(s)	161, 363, 464
HinfI	GANTC	4 cut(s)	128, 263, 332, 531
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	2 cut(s)	349, 727
Hpy166II	GTNNAC	2 cut(s)	373, 398
Hpy188I	TCNGA	4 cut(s)	319, 530, 545, 568
Hpy188III	TCNNGA	6 cut(s)	81, 302, 329, 383, 506, 742
Hpy8I	GTNNAC	2 cut(s)	373, 398
HpyAV	CCTTC	5 cut(s)	57, 148, 481, 512, 739
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4V	TGCA	5 cut(s)	254, 280, 373, 442, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 685
HpyF3I	CTNAG	4 cut(s)	115, 318, 423, 453
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	446
Kzo9I	GATC	3 cut(s)	172, 445, 538
LmnI	GCTCC	4 cut(s)	4, 12, 113, 655
Lsp1109I	GCAGC	2 cut(s)	406, 688
LweI	GCATC	2 cut(s)	406, 637
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	174, 447, 540
MboI	GATC	3 cut(s)	172, 445, 538
MboII	GAAGA	7 cut(s)	35, 66, 176, 216, 352, 530, 631
MhlI	GDGCHC	4 cut(s)	9, 88, 375, 502
MluCI	AATT	8 cut(s)	52, 66, 248, 275, 288, 305, 562, 779
MnlI	CCTC	6 cut(s)	51, 88, 208, 539, 647, 711
MseI	TTAA	2 cut(s)	291, 390
MspI	CCGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	2 cut(s)	497, 685
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	3 cut(s)	172, 445, 538
NlaIII	CATG	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	103
PfeI	GAWTC	4 cut(s)	128, 263, 332, 531
PkrI	GCNGC	2 cut(s)	421, 678
PsiI	TTATAA	1 cut(s)	581
Psp124BI	GAGCTC	2 cut(s)	9, 88
PspPI	GGNCC	2 cut(s)	241, 628
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SacI	GAGCTC	2 cut(s)	9, 88
SaqAI	TTAA	2 cut(s)	291, 390
SatI	GCNGC	2 cut(s)	420, 677
Sau3AI	GATC	3 cut(s)	172, 445, 538
Sau96I	GGNCC	2 cut(s)	241, 628
SduI	GDGCHC	4 cut(s)	9, 88, 375, 502
SfaNI	GCATC	2 cut(s)	406, 637
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	3 cut(s)	164, 236, 327
SmoI	CTYRAG	3 cut(s)	164, 236, 327
Sse9I	AATT	8 cut(s)	52, 66, 248, 275, 288, 305, 562, 779
SsiI	CCGC	3 cut(s)	10, 112, 731
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	2 cut(s)	9, 88
TaaI	ACNGT	1 cut(s)	739
TaqI	TCGA	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	8 cut(s)	52, 66, 248, 275, 288, 305, 562, 779
TfiI	GAWTC	4 cut(s)	128, 263, 332, 531
Tru1I	TTAA	2 cut(s)	291, 390
Tru9I	TTAA	2 cut(s)	291, 390
TscAI	CASTG	1 cut(s)	717
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	419, 676
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	717
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	4 cut(s)	248, 305, 562, 779
XmiI	GTMKAC	1 cut(s)	397
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.