Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Reverse (-)

66803296 .. 66807875

Gene Structure 4580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTGTTGCACTCCTACGCTGGGTAAACTACGTCCCCACCGCCTCCTCGCTCTTCACGACGTCGTTCAAGATGCCACTAGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATCATCAAAGTCTTCCAGTAGGCAAAAATGGAAGAGATGTGAGGACTTCATTCTCTGGTTTCTCAAGGACCGAAAATTTTCAGTCCAAGAAACAGTTGAAAATTGCATTTGGAGTATCGGAGTTGTCTCAAGATTCAGTGAAGAGCATTGCTGAAACTGGAAAAGCTTATGTGCACGACTTTTTGGATGTTAATGGTAGACCGGTACTCGTAGTGGATGCTGCTAAGCATTTTCCTGCTGTGCATGATCATGCTGAGAATGAGAAGCTCTGCGTATTTTTGATTGAGAAGGCATTGAGTGCCCTTCCTGAAGGGAGAGAAGAAATACTTGGAATCTTTGATCTCCGAGGCTTCGGTACAGAGAATTCTGATTTAAAGTTTATAACATTTTTGTTTGATGTATTTTACTATTATTACCCAAAGCGATTGGGCCAAGTCCTCCTCGTGGATGGTCCATATATATTCAAGCCAATTTGGCAGCTTGCAAAACCCTTGTTGAAATCATATGCTTCGGTTGTATGTATTACCATCCTAGATGAACATTACCTGTTGTCTGGTTTGAAAAATATACTTCTAGATGTATTACTGCATTTTGCTGTTGAACAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

241

Amino Acids

27.14

Weight (kDa)

6.66

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	89 - 205	1.8e-22	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	103 - 189	5.4e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AatII	GACGTC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	187, 475
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	318, 469
AfiI	CCNNNNNNNGG	2 cut(s)	22, 556
AgeI	ACCGGT	1 cut(s)	313
AgsI	TTSAA	6 cut(s)	70, 211, 577, 610, 673, 713
AhlI	ACTAGT	1 cut(s)	79
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	4 cut(s)	103, 278, 379, 592
AluI	AGCT	4 cut(s)	103, 278, 379, 592
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	243
Alw44I	GTGCAC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	541
ApaLI	GTGCAC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	332, 589
ApoI	RAATTY	2 cut(s)	187, 475
AsiGI	ACCGGT	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	180, 541, 563
AvaII	GGWCC	2 cut(s)	180, 563
BaeGI	GKGCMC	2 cut(s)	288, 415
BauI	CACGAG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	319, 601
BccI	CCATC	2 cut(s)	554, 647
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	243
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	3 cut(s)	80, 644, 686
BglI	GCCNNNNNGGC	1 cut(s)	586
BisI	GCNGC	2 cut(s)	333, 590
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	2 cut(s)	334, 591
Bme18I	GGWCC	2 cut(s)	180, 563
BmgT120I	GGNCC	3 cut(s)	180, 541, 563
BmsI	GCATC	2 cut(s)	63, 319
BpiI	GAAGAC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	3 cut(s)	125, 160, 225
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 556
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	128, 274
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	4 cut(s)	304, 334, 565, 639
BseLI	CCNNNNNNNGG	2 cut(s)	22, 556
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	128, 274
BseRI	GAGGAG	2 cut(s)	37, 542
BseSI	GKGCMC	2 cut(s)	288, 415
BseXI	GCAGC	2 cut(s)	319, 601
BseYI	CCCAGC	1 cut(s)	21
BshFI	GGCC	1 cut(s)	543
BshTI	ACCGGT	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	22, 556
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	288, 415
Bsp143I	GATC	3 cut(s)	112, 358, 451
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	358
BspQI	GCTCTTC	2 cut(s)	59, 248
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	128, 274
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	3 cut(s)	112, 358, 451
BssNI	GRCGYC	1 cut(s)	62
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	3 cut(s)	59, 139, 248
BstACI	GRCGYC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	336, 366
BstF5I	GGATG	4 cut(s)	304, 334, 565, 639
BstKTI	GATC	3 cut(s)	115, 361, 454
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	3 cut(s)	112, 358, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 586
BstSLI	GKGCMC	2 cut(s)	288, 415
BstV1I	GCAGC	2 cut(s)	319, 601
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	543
BtsCI	GGATG	4 cut(s)	304, 334, 565, 639
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	594
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	3 cut(s)	180, 541, 563
Csp6I	GTAC	2 cut(s)	317, 468
CspAI	ACCGGT	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	2 cut(s)	356, 362
CviJI	RGCY	8 cut(s)	5, 103, 278, 379, 462, 543, 580, 592
CviKI_1	RGCY	8 cut(s)	5, 103, 278, 379, 462, 543, 580, 592
CviQI	GTAC	2 cut(s)	317, 468
DdeI	CTNAG	2 cut(s)	336, 366
DpnI	GATC	3 cut(s)	114, 360, 453
DpnII	GATC	3 cut(s)	112, 358, 451
DraI	TTTAAA	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	59, 139, 248
EarI	CTCTTC	3 cut(s)	59, 139, 248
Eco47I	GGWCC	2 cut(s)	180, 563
Eco57I	CTGAAG	1 cut(s)	441
EcoRI	GAATTC	1 cut(s)	475
FaeI	CATG	2 cut(s)	359, 365
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	355, 361
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	333, 590
FokI	GGATG	4 cut(s)	311, 341, 572, 626
Fsp4HI	GCNGC	2 cut(s)	333, 590
FspBI	CTAG	3 cut(s)	80, 644, 686
GluI	GCNGC	2 cut(s)	333, 590
GsaI	CCCAGC	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	359, 365
HindIII	AAGCTT	2 cut(s)	101, 276
HinfI	GANTC	2 cut(s)	245, 444
HpaII	CCGG	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	28, 286, 311
Hpy188I	TCNGA	3 cut(s)	232, 458, 481
Hpy188III	TCNNGA	5 cut(s)	58, 70, 242, 419, 686
Hpy8I	GTNNAC	3 cut(s)	28, 286, 311
Hpy99I	CGWCG	2 cut(s)	64, 67
HpyAV	CCTTC	4 cut(s)	88, 394, 416, 425
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	2 cut(s)	33, 62
HpyCH4V	TGCA	6 cut(s)	11, 218, 286, 355, 596, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 586
HpyF3I	CTNAG	2 cut(s)	336, 366
HpySE526I	ACGT	2 cut(s)	33, 62
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	359, 365
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	112, 358, 451
LguI	GCTCTTC	2 cut(s)	59, 248
LpnPI	CCDG	9 cut(s)	7, 141, 153, 255, 327, 360, 432, 651, 671
Lsp1109I	GCAGC	2 cut(s)	319, 601
LweI	GCATC	2 cut(s)	63, 319
MaeI	CTAG	3 cut(s)	80, 644, 686
MaeII	ACGT	2 cut(s)	33, 62
MalI	GATC	3 cut(s)	114, 360, 453
MboI	GATC	3 cut(s)	112, 358, 451
MboII	GAAGA	5 cut(s)	46, 116, 156, 265, 443
MhlI	GDGCHC	2 cut(s)	288, 415
MluCI	AATT	4 cut(s)	187, 213, 475, 582
MnlI	CCTC	6 cut(s)	55, 58, 147, 452, 560, 563
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	2 cut(s)	303, 485
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	410, 586
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	3 cut(s)	112, 358, 451
NlaIII	CATG	2 cut(s)	359, 365
PciSI	GCTCTTC	2 cut(s)	59, 248
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	245, 444
PinAI	ACCGGT	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	334, 591
PsiI	TTATAA	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	21
PspPI	GGNCC	3 cut(s)	180, 541, 563
RsaI	GTAC	2 cut(s)	318, 469
RsaNI	GTAC	2 cut(s)	317, 468
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	2 cut(s)	59, 248
SaqAI	TTAA	2 cut(s)	303, 485
SatI	GCNGC	2 cut(s)	333, 590
Sau3AI	GATC	3 cut(s)	112, 358, 451
Sau96I	GGNCC	3 cut(s)	180, 541, 563
SduI	GDGCHC	2 cut(s)	288, 415
SetI	ASST	7 cut(s)	36, 65, 105, 280, 381, 594, 660
SfaNI	GCATC	2 cut(s)	63, 319
SinI	GGWCC	2 cut(s)	180, 563
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	3 cut(s)	104, 175, 240
SmoI	CTYRAG	3 cut(s)	104, 175, 240
SpeI	ACTAGT	1 cut(s)	79
Sse9I	AATT	4 cut(s)	187, 213, 475, 582
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	3 cut(s)	80, 644, 686
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	2 cut(s)	36, 65
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	4 cut(s)	187, 213, 475, 582
TfiI	GAWTC	2 cut(s)	245, 444
Tru1I	TTAA	2 cut(s)	303, 485
Tru9I	TTAA	2 cut(s)	303, 485
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	2 cut(s)	332, 589
TspDTI	ATGAA	2 cut(s)	150, 663
TspRI	CASTG	1 cut(s)	255
VneI	GTGCAC	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	180, 563
XapI	RAATTY	2 cut(s)	187, 475
XbaI	TCTAGA	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	3 cut(s)	80, 644, 686
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.