Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Reverse (-)

3393577 .. 3396590

Gene Structure 3014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGCTCCGCCTGTGTAATCCATTTCGTCACATTATTCCTCTTTCTTCAAGTTACTCCAATCAAGTGACATCTTCCTCCCGACCTCGTTGCTTGTCTGTTCGAAGCTCCCACTTAGATCACAACGAATCACGCAAGCTAGTTTTGGAAGTGAAGGAGAAGCTTGAGAAGGACCATCAAAGCCTTCCTGTTGGCGAAAATGGAAGAGATGATGAGGATTTGATTCTCTGGTTTCTCAAGGACCGAAAATTTTCGGTACAAGAGTCAGTTGAGAAATTGCACAAAGCAATTAAATGGCGTCAAGAATTTGGAGTGTCTGAGTTGTCTCAAGATTCTGTGAAAAAAATTGCTGAAACTGGAAAAGCTTACGTGCACGACTTTCTGGATGTTAATGGTAGACCAGTTCTCATAGTGGATGCTGCTAAGCATTTTCCTGGTGTGCATGATCCTGTTGAGGATGAGAAGCTCTGCGTATTTTTGATTGAAAGGGCATTGAGTGCACTTCCTGAAGGGAGAGAAGAAATACTTGGAATCTTTGATCTCCGAGGCTTCGGTACAGCGAATACTGATTTGAGGTTTGTAACATTTTTGTTTGATGTATTCTACTATTATTACCCAAGGCGATTGGGCCAAGTCCTGTTTGTGGATGCTCCATTTATATTCAAGCCAATTTGGCAGCTTGCAAAGCCCTTGTTGAAATCATATGCTTCCTTGGTGAGGTTTTGCTCTGTGGAGACTGTCAGGAAGGAATATTTTACAGAAGAAACACTACCTGCCAAATTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

264

Amino Acids

30.51

Weight (kDa)

6.72

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	118 - 261	6.3e-26	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	132 - 257	2.2e-07	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	781
AccI	GTMKAC	1 cut(s)	397
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	3 cut(s)	248, 305, 779
AcuI	CTGAAG	1 cut(s)	528
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	2 cut(s)	258, 556
AfiI	CCNNNNNNNGG	2 cut(s)	643, 717
AgsI	TTSAA	4 cut(s)	51, 485, 664, 697
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	7 cut(s)	7, 108, 139, 163, 365, 466, 679
AluI	AGCT	7 cut(s)	7, 108, 139, 163, 365, 466, 679
Alw21I	GWGCWC	3 cut(s)	9, 375, 502
Alw26I	GTCTC	3 cut(s)	330, 728, 780
Alw44I	GTGCAC	2 cut(s)	371, 498
AlwI	GGATC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	628
ApaLI	GTGCAC	2 cut(s)	371, 498
ApeKI	GCWGC	2 cut(s)	419, 676
ApoI	RAATTY	3 cut(s)	248, 305, 779
Asp700I	GAANNNNTTC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	172, 241, 628
AsuHPI	GGTGA	1 cut(s)	727
AsuII	TTCGAA	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	172, 241
BaeGI	GKGCMC	2 cut(s)	375, 502
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
Bbv12I	GWGCWC	3 cut(s)	9, 375, 502
BbvI	GCAGC	2 cut(s)	406, 688
BccI	CCATC	1 cut(s)	183
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	330, 728, 780
BfaI	CTAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	781
BglI	GCCNNNNNGGC	1 cut(s)	673
BisI	GCNGC	2 cut(s)	420, 677
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	2 cut(s)	421, 678
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	2 cut(s)	172, 241
BmgT120I	GGNCC	3 cut(s)	172, 241, 628
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	406, 637
Bpu1102I	GCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	3 cut(s)	185, 221, 312
BsaAI	YACGTR	1 cut(s)	370
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	544, 617, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 717
Bse1I	ACTGG	2 cut(s)	361, 401
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	544, 617, 711
BseGI	GGATG	4 cut(s)	391, 421, 463, 652
BseLI	CCNNNNNNNGG	2 cut(s)	643, 717
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	361, 401
BseSI	GKGCMC	2 cut(s)	375, 502
BseXI	GCAGC	2 cut(s)	406, 688
BshFI	GGCC	1 cut(s)	630
BsiHKAI	GWGCWC	3 cut(s)	9, 375, 502
BslI	CCNNNNNNNGG	2 cut(s)	643, 717
BsmAI	GTCTC	3 cut(s)	330, 728, 780
BsnI	GGCC	1 cut(s)	630
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	3 cut(s)	9, 375, 502
Bsp143I	GATC	3 cut(s)	118, 445, 538
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	781
BspPI	GGATC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	361, 401
BssECI	CCNNGG	3 cut(s)	544, 617, 711
BssMI	GATC	3 cut(s)	118, 445, 538
BssNI	GRCGYC	1 cut(s)	298
BssT1I	CCWWGG	2 cut(s)	617, 711
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	137, 681
BstDEI	CTNAG	3 cut(s)	115, 318, 423
BstENI	CCTNNNNNAGG	1 cut(s)	715
BstF5I	GGATG	4 cut(s)	391, 421, 463, 652
BstKTI	GATC	3 cut(s)	121, 448, 541
BstMAI	GTCTC	3 cut(s)	330, 728, 780
BstMBI	GATC	3 cut(s)	118, 445, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 673, 685
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	2 cut(s)	375, 502
BstV1I	GCAGC	2 cut(s)	406, 688
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	4 cut(s)	391, 421, 463, 652
BveI	ACCTGC	1 cut(s)	781
Cac8I	GCNNGC	2 cut(s)	137, 681
Cfr13I	GGNCC	3 cut(s)	172, 241, 628
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	257, 555
CviAII	CATG	1 cut(s)	443
CviQI	GTAC	2 cut(s)	257, 555
DdeI	CTNAG	3 cut(s)	115, 318, 423
DpnI	GATC	3 cut(s)	120, 447, 540
DpnII	GATC	3 cut(s)	118, 445, 538
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	617, 711
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	172, 241
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	617, 711
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	2 cut(s)	617, 711
FaeI	CATG	1 cut(s)	446
FaiI	YATR	5 cut(s)	410, 444, 659, 703, 705
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	420, 677
FokI	GGATG	4 cut(s)	398, 428, 470, 659
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	420, 677
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	2 cut(s)	420, 677
HaeIII	GGCC	1 cut(s)	630
HgaI	GACGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	446
HindIII	AAGCTT	2 cut(s)	161, 363
HinfI	GANTC	5 cut(s)	128, 223, 263, 332, 531
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	3 cut(s)	373, 398, 500
Hpy188I	TCNGA	2 cut(s)	319, 545
Hpy188III	TCNNGA	6 cut(s)	81, 302, 329, 383, 506, 742
Hpy8I	GTNNAC	3 cut(s)	373, 398, 500
HpyAV	CCTTC	5 cut(s)	148, 163, 194, 503, 739
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	280, 373, 442, 500, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 673, 685
HpyF3I	CTNAG	3 cut(s)	115, 318, 423
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	446
Kzo9I	GATC	3 cut(s)	118, 445, 538
LmnI	GCTCC	4 cut(s)	4, 12, 113, 655
Lsp1109I	GCAGC	2 cut(s)	406, 688
LweI	GCATC	2 cut(s)	406, 637
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	4 cut(s)	29, 53, 67, 580
MalI	GATC	3 cut(s)	120, 447, 540
MboI	GATC	3 cut(s)	118, 445, 538
MboII	GAAGA	5 cut(s)	39, 66, 216, 530, 773
MhlI	GDGCHC	3 cut(s)	9, 375, 502
MluCI	AATT	7 cut(s)	248, 275, 288, 305, 345, 669, 779
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	8 cut(s)	51, 88, 96, 208, 448, 539, 567, 711
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	2 cut(s)	291, 390
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	497, 673, 685
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	3 cut(s)	118, 445, 538
NlaIII	CATG	1 cut(s)	446
NmuCI	GTSAC	2 cut(s)	29, 67
NspV	TTCGAA	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	4 cut(s)	128, 223, 332, 531
PkrI	GCNGC	2 cut(s)	421, 678
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspPI	GGNCC	3 cut(s)	172, 241, 628
RsaI	GTAC	2 cut(s)	258, 556
RsaNI	GTAC	2 cut(s)	257, 555
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	291, 390
SatI	GCNGC	2 cut(s)	420, 677
Sau3AI	GATC	3 cut(s)	118, 445, 538
Sau96I	GGNCC	3 cut(s)	172, 241, 628
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	9, 375, 502
SfaNI	GCATC	2 cut(s)	406, 637
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	2 cut(s)	172, 241
SmlI	CTYRAG	3 cut(s)	164, 236, 327
SmoI	CTYRAG	3 cut(s)	164, 236, 327
Sse9I	AATT	7 cut(s)	248, 275, 288, 305, 345, 669, 779
SsiI	CCGC	1 cut(s)	10
SspI	AATATT	1 cut(s)	752
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	617, 711
TaaI	ACNGT	1 cut(s)	739
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	7 cut(s)	248, 275, 288, 305, 345, 669, 779
TfiI	GAWTC	4 cut(s)	128, 223, 332, 531
Tru1I	TTAA	2 cut(s)	291, 390
Tru9I	TTAA	2 cut(s)	291, 390
TseFI	GTSAC	2 cut(s)	29, 67
TseI	GCWGC	2 cut(s)	419, 676
Tsp45I	GTSAC	2 cut(s)	29, 67
VneI	GTGCAC	2 cut(s)	371, 498
VpaK11BI	GGWCC	2 cut(s)	172, 241
XagI	CCTNNNNNAGG	1 cut(s)	715
XapI	RAATTY	3 cut(s)	248, 305, 779
XmiI	GTMKAC	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.