Rh7DG134700

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004426
Physical Location & Seq
Forward (+)
11422905 .. 11425967
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG134700.1

Sequence Viewer

Length: 738 bp
ATGAAGACAAGACAAGCGCACGTGTTTCCCACACGTGGAGGCACTCGAAGACTCATCGCCCTCCGCAGAAGTGGCGTTGTTCTTCTTCGTCTTTACACCACTTACCCAGAAATGGAGCTCCGCCTGTGTAATCCATTTCGTCACATTATTCCTCTTCCTTCAAATTACTCCAATCAAATTACATCTTCCTCCCGAGCTCGTAGCTTATCGGTTCGAAGCTCCCACTTAGGCCCCAACGAATCACGCAAGCTAGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATCATCAAAGTCTTCCGGTAGGCAAAAATGGAAGAGATGATGAGGACTTCATTCTCTGGTTTCTCAAGGACCGAAAATTTTCAGTCCAAGAATCAGTTGAAAAATTGCACAAGGCAATTAAATGGCGTCAAGAATTTGGCGTGTCTGAGTTGTCTCAAGATTCAGTGAAGAACATTGCTGAAACTGGAAAGGCTTATGTGCATGACTTTCTGGATGTTAATGGTAGACCAGTTCTTATAGTGGATGCTGCTAAGCATTTTCCTGCTGTGCATGATCCTGCTGAGAATGAGAAGCTCTGTGTATTTTTGATTGAGAAGGCATTGAGTGCCCTTCCTGAAGGGAGAGAAGAAATACTCGGAATCTTTGATCTCCGAGGCTTCGGTACAGAGAATTCTGATTTAAAGTTTTTAACATTTTTGGTGAGGTTTACAACACTGCTTATTTTTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

245

Amino Acids

28.04

Weight (kDa)

9.32

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 155 - 235 2.3e-10 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 508
AciI CCGC 2 cut(s) 64, 121
AclWI GGATC 1 cut(s) 551
AcsI RAATTY 3 cut(s) 359, 416, 673
AcuI CTGAAG 1 cut(s) 639
AcvI CACGTG 2 cut(s) 22, 35
AcyI GRCGYC 1 cut(s) 409
AfaI GTAC 1 cut(s) 667
AfiI CCNNNNNNNGG 2 cut(s) 35, 112
AflIII ACRYGT 2 cut(s) 21, 32
AgsI TTSAA 2 cut(s) 162, 383
AluBI AGCT 7 cut(s) 118, 197, 204, 219, 250, 274, 577
AluI AGCT 7 cut(s) 118, 197, 204, 219, 250, 274, 577
Alw21I GWGCWC 2 cut(s) 120, 199
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 3 cut(s) 359, 416, 673
Asp700I GAANNNNTTC 1 cut(s) 361
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 230, 352
AsuHPI GGTGA 1 cut(s) 715
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 352
BaeGI GKGCMC 1 cut(s) 613
BanII GRGCYC 2 cut(s) 120, 199
BbrPI CACGTG 2 cut(s) 22, 35
BbsI GAAGAC 3 cut(s) 11, 55, 287
Bbv12I GWGCWC 2 cut(s) 120, 199
BbvI GCAGC 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 531
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 532
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 230, 352
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 1 cut(s) 517
BpiI GAAGAC 3 cut(s) 11, 55, 287
Bpu1102I GCTNAGC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 214
BpuEI CTTGAG 3 cut(s) 296, 332, 423
BsaAI YACGTR 2 cut(s) 22, 35
BsaHI GRCGYC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 112
Bse1I ACTGG 2 cut(s) 472, 512
Bse3DI GCAATG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 2 cut(s) 502, 532
BseLI CCNNNNNNNGG 2 cut(s) 35, 112
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 420, 555
BseNI ACTGG 2 cut(s) 472, 512
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 1 cut(s) 517
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 2 cut(s) 120, 199
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 35, 112
BsmAI GTCTC 1 cut(s) 441
BsnI GGCC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 192
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 120, 199, 613
Bsp143I GATC 3 cut(s) 283, 556, 649
Bsp1720I GCTNAGC 1 cut(s) 534
BspACI CCGC 2 cut(s) 64, 121
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 2 cut(s) 421, 556
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 551
BspT104I TTCGAA 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 2 cut(s) 472, 512
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 3 cut(s) 283, 556, 649
BssNI GRCGYC 1 cut(s) 409
Bst6I CTCTTC 2 cut(s) 159, 310
BstACI GRCGYC 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 608
BstBAI YACGTR 2 cut(s) 22, 35
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 4 cut(s) 226, 429, 534, 564
BstF5I GGATG 2 cut(s) 502, 532
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 3 cut(s) 286, 559, 652
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 3 cut(s) 283, 556, 649
BstMWI GCNNNNNNNGC 2 cut(s) 72, 608
BstSLI GKGCMC 1 cut(s) 613
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 3 cut(s) 11, 55, 287
BsuRI GGCC 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 2 cut(s) 502, 532
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 2 cut(s) 453, 716
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 230, 352
CseI GACGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 666
CviAII CATG 2 cut(s) 485, 554
CviQI GTAC 1 cut(s) 666
DdeI CTNAG 4 cut(s) 226, 429, 534, 564
DpnI GATC 3 cut(s) 285, 558, 651
DpnII GATC 3 cut(s) 283, 556, 649
DraI TTTAAA 1 cut(s) 684
Eam1104I CTCTTC 2 cut(s) 159, 310
EarI CTCTTC 2 cut(s) 159, 310
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 2 cut(s) 118, 197
Eco24I GRGCYC 2 cut(s) 120, 199
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 2 cut(s) 118, 197
Eco57I CTGAAG 1 cut(s) 639
Eco72I CACGTG 2 cut(s) 22, 35
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 2 cut(s) 118, 197
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 673
EcoT38I GRGCYC 2 cut(s) 120, 199
FaeI CATG 2 cut(s) 488, 557
FaiI YATR 4 cut(s) 480, 486, 521, 555
FatI CATG 2 cut(s) 484, 553
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 2 cut(s) 509, 539
FriOI GRGCYC 2 cut(s) 120, 199
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 531
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 398
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 409
Hin1II CATG 2 cut(s) 488, 557
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 5 cut(s) 51, 239, 374, 443, 642
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 2 cut(s) 509, 711
Hpy188I TCNGA 4 cut(s) 430, 641, 656, 679
Hpy188III TCNNGA 5 cut(s) 192, 413, 440, 494, 617
Hpy8I GTNNAC 2 cut(s) 509, 711
HpyAV CCTTC 5 cut(s) 168, 259, 592, 614, 623
HpyCH4IV ACGT 2 cut(s) 21, 34
HpyCH4V TGCA 3 cut(s) 391, 484, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 608
HpyF3I CTNAG 4 cut(s) 226, 429, 534, 564
HpySE526I ACGT 2 cut(s) 21, 34
Hsp92I GRCGYC 1 cut(s) 409
Hsp92II CATG 2 cut(s) 488, 557
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 3 cut(s) 283, 556, 649
LmnI GCTCC 3 cut(s) 115, 123, 224
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 251
MaeII ACGT 2 cut(s) 21, 34
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 285, 558, 651
MboI GATC 3 cut(s) 283, 556, 649
MhlI GDGCHC 3 cut(s) 120, 199, 613
MluCI AATT 7 cut(s) 163, 177, 359, 386, 399, 416, 673
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 7 cut(s) 32, 71, 162, 199, 319, 650, 699
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 5 cut(s) 402, 501, 683, 692, 736
MspI CCGG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 72, 608
NdeII GATC 3 cut(s) 283, 556, 649
NlaIII CATG 2 cut(s) 488, 557
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 140
NspV TTCGAA 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 361
PfeI GAWTC 4 cut(s) 239, 374, 443, 642
PkrI GCNGC 1 cut(s) 532
PleI GAGTC 1 cut(s) 45
PmaCI CACGTG 2 cut(s) 22, 35
PmlI CACGTG 2 cut(s) 22, 35
PpsI GAGTC 1 cut(s) 45
Ppu21I YACGTR 2 cut(s) 22, 35
Psp124BI GAGCTC 2 cut(s) 120, 199
PspCI CACGTG 2 cut(s) 22, 35
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 230, 352
RsaI GTAC 1 cut(s) 667
RsaNI GTAC 1 cut(s) 666
SacI GAGCTC 2 cut(s) 120, 199
SaqAI TTAA 5 cut(s) 402, 501, 683, 692, 736
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 3 cut(s) 283, 556, 649
Sau96I GGNCC 2 cut(s) 230, 352
SchI GAGTC 1 cut(s) 45
SduI GDGCHC 3 cut(s) 120, 199, 613
SfaNI GCATC 1 cut(s) 517
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 1 cut(s) 352
SmlI CTYRAG 3 cut(s) 275, 347, 438
SmoI CTYRAG 3 cut(s) 275, 347, 438
Sse9I AATT 7 cut(s) 163, 177, 359, 386, 399, 416, 673
SsiI CCGC 2 cut(s) 64, 121
SspMI CTAG 1 cut(s) 251
SstI GAGCTC 2 cut(s) 120, 199
TaiI ACGT 2 cut(s) 24, 37
TaqI TCGA 2 cut(s) 46, 214
TaqII GACCGA 1 cut(s) 369
TasI AATT 7 cut(s) 163, 177, 359, 386, 399, 416, 673
TfiI GAWTC 4 cut(s) 239, 374, 443, 642
Tru1I TTAA 5 cut(s) 402, 501, 683, 692, 736
Tru9I TTAA 5 cut(s) 402, 501, 683, 692, 736
TscAI CASTG 2 cut(s) 453, 723
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 17, 322
TspRI CASTG 2 cut(s) 453, 723
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 3 cut(s) 359, 416, 673
XmiI GTMKAC 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.