Rh7CG136800

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004426
Physical Location & Seq
Forward (+)
11151392 .. 11154406
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG136800.1

Sequence Viewer

Length: 741 bp
ATGAAGCTGATCAGACAAGCGCACGTGTTTCCCACACGTGGAGGCACTCGAAGACTCATCGCCCTCCGCAGAAATGGCGTTGTTCTTCTTCTTCTTTACACCACTTACCCAGAAATGGAGCTCCGCCTGTGTAATCCATTTCGTCACATTATTCCTCTTCCTTCAAATTACTCCAATCAAATTACATCTTACTCCCGAGCTCGTAGCTTATCGGTTCGAAGCTCCCACTTAGGCCCCAGCGAATCACGCAAGCTAGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATCATCGAAGTCTTCCAGTAGGCAAAAATGGAAGAGATGATGAGGACTTGATTCTATGGTTTCTCAAGGACCGAAAATTTTCAGTCCAAGAATCAGTTGAAAAATTGCACAAGGCAATTAAATGGCGTCAAGAATTTGGCGTGTCTGAGCTGTCTCAAGATTCAGTGAAGAACATTGCTGAAACTGGAAAAGCTTATGTGCACGACTTTCTGGATGTTAATGGTAGACCAGTTCTTGTAGTGGATGCTGCTAAGCATTTTCCTGCTGTGCATGATCCTGCTGAGAATGAGAAGCTCTGTGTATTTTTGATTGAGAAGGCATTGAGTGCCCTTCCTGAAGGGAGAGAAGAAATACTCGGAATCTTTGATCTCCGAGGCTTCGGTACAGAGAATTCTGATTTAAAGTTTATAACATTTTTGGTGAGGTTTACAACACTGCTTATTTTTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

246

Amino Acids

28.18

Weight (kDa)

9.3

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 156 - 236 2.5e-10 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
AccI GTMKAC 1 cut(s) 511
AciI CCGC 2 cut(s) 67, 124
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 3 cut(s) 362, 419, 676
AcuI CTGAAG 1 cut(s) 642
AcvI CACGTG 2 cut(s) 25, 38
AcyI GRCGYC 1 cut(s) 412
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 38, 115
AflIII ACRYGT 2 cut(s) 24, 35
AgsI TTSAA 2 cut(s) 165, 386
Alw21I GWGCWC 3 cut(s) 123, 202, 489
Alw26I GTCTC 1 cut(s) 444
Alw44I GTGCAC 1 cut(s) 485
AlwI GGATC 1 cut(s) 554
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 3 cut(s) 362, 419, 676
Asp700I GAANNNNTTC 1 cut(s) 364
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 233, 355
AsuHPI GGTGA 1 cut(s) 718
AsuII TTCGAA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 2 cut(s) 489, 616
BanII GRGCYC 2 cut(s) 123, 202
BbrPI CACGTG 2 cut(s) 25, 38
BbsI GAAGAC 2 cut(s) 58, 290
Bbv12I GWGCWC 3 cut(s) 123, 202, 489
BbvI GCAGC 1 cut(s) 520
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 254
BisI GCNGC 1 cut(s) 534
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 233, 355
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 2 cut(s) 58, 290
Bpu1102I GCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 217
BpuEI CTTGAG 3 cut(s) 299, 335, 426
BsaAI YACGTR 2 cut(s) 25, 38
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 658
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 115
Bse1I ACTGG 3 cut(s) 302, 475, 515
Bse3DI GCAATG 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 658
BseGI GGATG 2 cut(s) 505, 535
BseLI CCNNNNNNNGG 2 cut(s) 38, 115
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 423, 558
BseNI ACTGG 3 cut(s) 302, 475, 515
BseSI GKGCMC 2 cut(s) 489, 616
BseXI GCAGC 1 cut(s) 520
BseYI CCCAGC 1 cut(s) 236
BshFI GGCC 1 cut(s) 234
BsiHKAI GWGCWC 3 cut(s) 123, 202, 489
BsiHKCI CYCGRG 1 cut(s) 195
BslI CCNNNNNNNGG 2 cut(s) 38, 115
BsmAI GTCTC 1 cut(s) 444
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 217
Bsp1286I GDGCHC 4 cut(s) 123, 202, 489, 616
Bsp143I GATC 4 cut(s) 9, 286, 559, 652
Bsp1720I GCTNAGC 1 cut(s) 537
BspACI CCGC 2 cut(s) 67, 124
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 2 cut(s) 424, 559
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 554
BspT104I TTCGAA 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 3 cut(s) 302, 475, 515
BssECI CCNNGG 1 cut(s) 658
BssMI GATC 4 cut(s) 9, 286, 559, 652
BssNI GRCGYC 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 162, 313
BstACI GRCGYC 1 cut(s) 412
BstAPI GCANNNNNTGC 1 cut(s) 611
BstBAI YACGTR 2 cut(s) 25, 38
BstBI TTCGAA 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 4 cut(s) 229, 432, 537, 567
BstF5I GGATG 2 cut(s) 505, 535
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 4 cut(s) 12, 289, 562, 655
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 4 cut(s) 9, 286, 559, 652
BstMWI GCNNNNNNNGC 3 cut(s) 75, 246, 611
BstSLI GKGCMC 2 cut(s) 489, 616
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 2 cut(s) 58, 290
BsuRI GGCC 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 505, 535
BtsI GCAGTG 1 cut(s) 719
BtsIMutI CAGTG 2 cut(s) 456, 719
Cac8I GCNNGC 1 cut(s) 251
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 233, 355
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 669
CviAII CATG 1 cut(s) 557
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 4 cut(s) 229, 432, 537, 567
DpnI GATC 4 cut(s) 11, 288, 561, 654
DpnII GATC 4 cut(s) 9, 286, 559, 652
DraI TTTAAA 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 162, 313
EarI CTCTTC 2 cut(s) 162, 313
EciI GGCGGA 1 cut(s) 113
Ecl136II GAGCTC 2 cut(s) 121, 200
Eco24I GRGCYC 2 cut(s) 123, 202
Eco47I GGWCC 1 cut(s) 355
Eco53kI GAGCTC 2 cut(s) 121, 200
Eco57I CTGAAG 1 cut(s) 642
Eco72I CACGTG 2 cut(s) 25, 38
Eco88I CYCGRG 1 cut(s) 195
EcoICRI GAGCTC 2 cut(s) 121, 200
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 123, 202
FaeI CATG 1 cut(s) 560
FaiI YATR 4 cut(s) 343, 483, 558, 695
FatI CATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 2 cut(s) 512, 542
FriOI GRGCYC 2 cut(s) 123, 202
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 534
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 234
HgaI GACGC 1 cut(s) 401
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 412
Hin1II CATG 1 cut(s) 560
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 2 cut(s) 275, 477
HinfI GANTC 6 cut(s) 54, 242, 337, 377, 446, 645
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 3 cut(s) 487, 512, 714
Hpy188I TCNGA 5 cut(s) 14, 433, 644, 659, 682
Hpy188III TCNNGA 5 cut(s) 195, 416, 443, 497, 620
Hpy8I GTNNAC 3 cut(s) 487, 512, 714
HpyAV CCTTC 5 cut(s) 171, 262, 595, 617, 626
HpyCH4IV ACGT 2 cut(s) 24, 37
HpyCH4V TGCA 3 cut(s) 394, 487, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 246, 611
HpyF3I CTNAG 4 cut(s) 229, 432, 537, 567
HpySE526I ACGT 2 cut(s) 24, 37
Hsp92I GRCGYC 1 cut(s) 412
Hsp92II CATG 1 cut(s) 560
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 4 cut(s) 9, 286, 559, 652
LmnI GCTCC 3 cut(s) 118, 126, 227
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 520
MaeI CTAG 1 cut(s) 254
MaeII ACGT 2 cut(s) 24, 37
MaeIII GTNAC 1 cut(s) 143
MalI GATC 4 cut(s) 11, 288, 561, 654
MboI GATC 4 cut(s) 9, 286, 559, 652
MboII GAAGA 9 cut(s) 63, 77, 80, 83, 149, 290, 330, 466, 644
MhlI GDGCHC 4 cut(s) 123, 202, 489, 616
MluCI AATT 7 cut(s) 166, 180, 362, 389, 402, 419, 676
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 6 cut(s) 35, 74, 165, 322, 653, 702
MroXI GAANNNNTTC 1 cut(s) 364
MseI TTAA 4 cut(s) 405, 504, 686, 739
MwoI GCNNNNNNNGC 3 cut(s) 75, 246, 611
NdeII GATC 4 cut(s) 9, 286, 559, 652
NlaIII CATG 1 cut(s) 560
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 143
NspV TTCGAA 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 5 cut(s) 242, 337, 377, 446, 645
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 1 cut(s) 48
PmaCI CACGTG 2 cut(s) 25, 38
PmlI CACGTG 2 cut(s) 25, 38
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 2 cut(s) 25, 38
PsiI TTATAA 1 cut(s) 695
Psp124BI GAGCTC 2 cut(s) 123, 202
PspCI CACGTG 2 cut(s) 25, 38
PspFI CCCAGC 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 233, 355
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
SacI GAGCTC 2 cut(s) 123, 202
SaqAI TTAA 4 cut(s) 405, 504, 686, 739
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 4 cut(s) 9, 286, 559, 652
Sau96I GGNCC 2 cut(s) 233, 355
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 4 cut(s) 123, 202, 489, 616
SfaNI GCATC 1 cut(s) 520
SfuI TTCGAA 1 cut(s) 217
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 3 cut(s) 278, 350, 441
SmoI CTYRAG 3 cut(s) 278, 350, 441
Sse9I AATT 7 cut(s) 166, 180, 362, 389, 402, 419, 676
SsiI CCGC 2 cut(s) 67, 124
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 2 cut(s) 123, 202
TaiI ACGT 2 cut(s) 27, 40
TaqI TCGA 3 cut(s) 49, 217, 292
TaqII GACCGA 1 cut(s) 372
TasI AATT 7 cut(s) 166, 180, 362, 389, 402, 419, 676
TfiI GAWTC 5 cut(s) 242, 337, 377, 446, 645
Tru1I TTAA 4 cut(s) 405, 504, 686, 739
Tru9I TTAA 4 cut(s) 405, 504, 686, 739
TscAI CASTG 2 cut(s) 456, 726
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 456, 726
VneI GTGCAC 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 3 cut(s) 362, 419, 676
XmiI GTMKAC 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 364
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.