Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Forward (+)

31128633 .. 31131400

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1170600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGCTCCGCAGTATCCGTAATCCCCTGCGTCATCTTCCCGTGCTCTCAAATTCCTCCTACCAAATTAAATCCTCCCAAATTCGCACTTTCTCAGTTCGGAGCTGCCGGTTAGACGTCAGCGAATCACACAAGCTGGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATTATCGAAGTCTTCCTGTAGGGAAAAATGGAAGAGATGATGAGGATATGATCCTCTGGTTTCTCAAGGACCGCAAGTTTTCGGTCGAAGATGCTGTTGAAAGATTGAATAAAGCAATTAAATGGCGTCAAGAATTCAGAGTGTCCGAATTGTCTCAAGATTCAGTGAAGGGTATAGCGGAAACTGGAAAAGCTTATGTACACGACTTTCTCGATGTTAACGGCAGGCCAGTTCTCATAGTGGATGCTTCTAAGCATCTTCCTGCTGTGCATGACCCTGCTGAGAATGAGAAGCTCTGCGTGTTTTTGATTGAGAAGGCGTTGAGTGCCCTTCCAGAAGGGTGCGAAGAAATACTCGGAATCTTCGATCTACGAGGGTTTGGTAGAGAAAATACAGATTTAGATTTCATAACATTTTTGTTTGATATTTTCTACTACTATTATCCAAAGCGATTGGGCCAAGTCCTCTTCGTGGAAGCTCCGTTTATATTCAAGCCAATTTGGCTGCTCGCCAAACCGCTGTTAAAATCGTATTCTTCGCTGGTGAGGTTTTGCTCCGTGGAGACCGTCAGGAAGGAGTACTTTACAGAAGCAACGGTGCCAGCTAAATTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

263

Amino Acids

30.42

Weight (kDa)

7.65

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	117 - 252	4.8e-24	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	131 - 224	9.7e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	766
AciI	CCGC	4 cut(s)	10, 241, 347, 686
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	4 cut(s)	52, 81, 302, 776
AcyI	GRCGYC	2 cut(s)	117, 295
AfaI	GTAC	2 cut(s)	369, 749
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	269, 277, 661
AluBI	AGCT	8 cut(s)	7, 105, 136, 160, 362, 463, 647, 773
AluI	AGCT	8 cut(s)	7, 105, 136, 160, 362, 463, 647, 773
Alw21I	GWGCWC	2 cut(s)	9, 48
Alw26I	GTCTC	3 cut(s)	327, 725, 777
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	2 cut(s)	395, 625
ApeKI	GCWGC	2 cut(s)	105, 673
ApoI	RAATTY	4 cut(s)	52, 81, 302, 776
AspS9I	GGNCC	2 cut(s)	238, 625
AsuHPI	GGTGA	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	9, 48
BbvI	GCAGC	2 cut(s)	92, 660
BceAI	ACGGC	1 cut(s)	406
BciVI	GTATCC	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	327, 725, 777
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	670
BisI	GCNGC	2 cut(s)	106, 674
BlsI	GCNGC	2 cut(s)	107, 675
BmcAI	AGTACT	1 cut(s)	749
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	238, 625
BmiI	GGNNCC	1 cut(s)	768
BmsI	GCATC	3 cut(s)	250, 403, 433
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	182, 218, 309
BsaHI	GRCGYC	2 cut(s)	117, 295
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	358, 398
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	108, 441
BseNI	ACTGG	2 cut(s)	358, 398
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	92, 660
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	397, 627
BshNI	GGYRCC	1 cut(s)	766
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	9, 48
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	3 cut(s)	327, 725, 777
BsnI	GGCC	2 cut(s)	397, 627
Bso31I	GGTCTC	1 cut(s)	725
Bsp1286I	GDGCHC	3 cut(s)	9, 48, 499
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	219, 535
BspACI	CCGC	4 cut(s)	10, 241, 347, 686
BspANI	GGCC	2 cut(s)	397, 627
BspCNI	CTCAG	2 cut(s)	107, 442
BspLI	GGNNCC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	766
BspTNI	GGTCTC	1 cut(s)	725
BsrFI	RCCGGY	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	358, 398
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	726
BssMI	GATC	2 cut(s)	219, 535
BssNI	GRCGYC	2 cut(s)	117, 295
Bst4CI	ACNGT	2 cut(s)	736, 766
Bst6I	CTCTTC	2 cut(s)	196, 641
BstACI	GRCGYC	2 cut(s)	117, 295
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	395, 678, 771
BstDEI	CTNAG	3 cut(s)	94, 420, 450
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	2 cut(s)	222, 538
BstMAI	GTCTC	3 cut(s)	327, 725, 777
BstMBI	GATC	2 cut(s)	219, 535
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 670
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	92, 660
BstV2I	GAAGAC	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	397, 627
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	3 cut(s)	395, 678, 771
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	238, 625
CseI	GACGC	2 cut(s)	20, 284
Csp6I	GTAC	2 cut(s)	368, 748
CviAII	CATG	1 cut(s)	440
CviQI	GTAC	2 cut(s)	368, 748
DdeI	CTNAG	3 cut(s)	94, 420, 450
DpnI	GATC	2 cut(s)	221, 537
DpnII	GATC	2 cut(s)	219, 535
Eam1104I	CTCTTC	2 cut(s)	196, 641
EarI	CTCTTC	2 cut(s)	196, 641
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	443
FaiI	YATR	7 cut(s)	218, 344, 366, 407, 441, 578, 656
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	106, 674
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	106, 674
GluI	GCNGC	2 cut(s)	106, 674
HaeIII	GGCC	2 cut(s)	397, 627
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	2 cut(s)	20, 284
Hin1I	GRCGYC	2 cut(s)	117, 295
Hin1II	CATG	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	158, 360
HinfI	GANTC	3 cut(s)	125, 329, 528
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	2 cut(s)	370, 388
Hpy188I	TCNGA	4 cut(s)	102, 308, 316, 527
Hpy188III	TCNNGA	5 cut(s)	299, 326, 380, 503, 739
Hpy8I	GTNNAC	2 cut(s)	370, 388
HpyAV	CCTTC	6 cut(s)	145, 331, 478, 500, 509, 736
HpyCH4III	ACNGT	2 cut(s)	736, 766
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 670
HpyF3I	CTNAG	3 cut(s)	94, 420, 450
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	2 cut(s)	117, 295
Hsp92II	CATG	1 cut(s)	443
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	219, 535
LmnI	GCTCC	5 cut(s)	4, 12, 102, 652, 728
Lsp1109I	GCAGC	2 cut(s)	92, 660
LweI	GCATC	3 cut(s)	250, 403, 433
MaeII	ACGT	1 cut(s)	117
MalI	GATC	2 cut(s)	221, 537
MboI	GATC	2 cut(s)	219, 535
MboII	GAAGA	9 cut(s)	29, 173, 213, 269, 419, 523, 527, 628, 696
MhlI	GDGCHC	3 cut(s)	9, 48, 499
MluCI	AATT	8 cut(s)	52, 66, 81, 285, 302, 317, 666, 776
MnlI	CCTC	7 cut(s)	67, 85, 205, 233, 536, 644, 708
MseI	TTAA	4 cut(s)	69, 288, 387, 692
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	494, 670
NdeII	GATC	2 cut(s)	219, 535
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 531
PfeI	GAWTC	3 cut(s)	125, 329, 528
PkrI	GCNGC	2 cut(s)	107, 675
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	2 cut(s)	238, 625
RsaI	GTAC	2 cut(s)	369, 749
RsaNI	GTAC	2 cut(s)	368, 748
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	69, 288, 387, 692
SatI	GCNGC	2 cut(s)	106, 674
Sau3AI	GATC	2 cut(s)	219, 535
Sau96I	GGNCC	2 cut(s)	238, 625
ScaI	AGTACT	1 cut(s)	749
SduI	GDGCHC	3 cut(s)	9, 48, 499
SfaNI	GCATC	3 cut(s)	250, 403, 433
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	3 cut(s)	161, 233, 324
SmoI	CTYRAG	3 cut(s)	161, 233, 324
Sse9I	AATT	8 cut(s)	52, 66, 81, 285, 302, 317, 666, 776
SsiI	CCGC	4 cut(s)	10, 241, 347, 686
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	736, 766
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	4 cut(s)	175, 255, 381, 534
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	8 cut(s)	52, 66, 81, 285, 302, 317, 666, 776
TatI	WGTACW	2 cut(s)	367, 747
TfiI	GAWTC	3 cut(s)	125, 329, 528
Tru1I	TTAA	4 cut(s)	69, 288, 387, 692
Tru9I	TTAA	4 cut(s)	69, 288, 387, 692
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	2 cut(s)	105, 673
TspDTI	ATGAA	1 cut(s)	565
TspGWI	ACGGA	3 cut(s)	8, 639, 715
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	4 cut(s)	52, 81, 302, 776
ZraI	GACGTC	1 cut(s)	118
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.