Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Forward (+)

17427203 .. 17429837

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGCTCCGCAGTATCTGTAATCCTCTGCGTCATCTTTCTGTGCTCTCCAATTGTTCCCATCAAATTAAATCGTCCCGAATTCGCAGCTTCTCAGTTCGGAGCTGCCGCTTAGACCCCAATGAATCACACAAGCTGGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATTTTCAGAGTCTTCCTGTAGGGAAAAATGGAAGAGATGATGAAGATATGATCCTATGGTTTCTCAAGGACCGCAAGTTTTCAGTCAAAAATGCTGTCGAAAGATTGAATAAAGCAATCAAATGGCGTCGAGAATTCAGAGTGTCAGAATTGTCTCAAGATTCGGTGAAGGGTATAGCCAAAACTGGAAAAGCTTATGTACACGACTTTCTTGATGTTAACGGCAGACCCGTTCTCATAGTGGATGTTTCTAAGCATCTTCCTGCTGTGCATGATCCTGCTGAGAATGAGAAGCTCTGCGTGTTTTTGATTGAGAAGGCGTTGAGTGCCCTTCCAGAAGGGAGCGAAGAAATACTAGGAATCTTCGATCTACGAGGGTTCGGTAGAGAAAATGCAGATTTAGATTTCATAACATTTTTGTTTGATGTTTTCTACTACTATTATCCAAAGCGATTGGGCCAAGTCCTCTTCGTGGAAGCTCCATTTATATTCAAGCCAATTTGGCAGCTCGCCAAACCGTTGTTAAAATCTTATTCTTCGCTGGTGAGGTTTTGCTCCGTGGAGACCGTCAGAAAGGAGTATTTTACAGAAGCGACGGTGCCTGCTAAATTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

263

Amino Acids

30.35

Weight (kDa)

8.97

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	766
AciI	CCGC	3 cut(s)	10, 109, 241
AclWI	GGATC	2 cut(s)	214, 437
AcsI	RAATTY	3 cut(s)	81, 302, 776
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgsI	TTSAA	2 cut(s)	277, 661
AluBI	AGCT	9 cut(s)	7, 90, 105, 136, 160, 362, 463, 647, 676
AluI	AGCT	9 cut(s)	7, 90, 105, 136, 160, 362, 463, 647, 676
Alw21I	GWGCWC	2 cut(s)	9, 48
Alw26I	GTCTC	3 cut(s)	327, 725, 777
AlwI	GGATC	2 cut(s)	214, 437
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	625
ApeKI	GCWGC	3 cut(s)	87, 105, 673
ApoI	RAATTY	3 cut(s)	81, 302, 776
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AspS9I	GGNCC	2 cut(s)	238, 625
AsuHPI	GGTGA	2 cut(s)	346, 724
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	9, 48
BbvI	GCAGC	3 cut(s)	92, 99, 685
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	327, 725, 777
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	670
BisI	GCNGC	4 cut(s)	88, 106, 109, 674
BlsI	GCNGC	4 cut(s)	89, 107, 110, 675
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	238, 625
BmiI	GGNNCC	1 cut(s)	768
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	182, 218, 309
BsaHI	GRCGYC	1 cut(s)	295
BsaI	GGTCTC	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	108, 441
BseNI	ACTGG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	92, 99, 685
BshFI	GGCC	1 cut(s)	627
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	2 cut(s)	9, 48
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	3 cut(s)	327, 725, 777
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	627
Bso31I	GGTCTC	1 cut(s)	725
Bsp1286I	GDGCHC	3 cut(s)	9, 48, 499
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	219, 442, 535
BspACI	CCGC	3 cut(s)	10, 109, 241
BspANI	GGCC	1 cut(s)	627
BspCNI	CTCAG	2 cut(s)	107, 442
BspLI	GGNNCC	1 cut(s)	768
BspPI	GGATC	2 cut(s)	214, 437
BspT107I	GGYRCC	1 cut(s)	766
BspTNI	GGTCTC	1 cut(s)	725
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	726
BssMI	GATC	3 cut(s)	219, 442, 535
BssNI	GRCGYC	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	687, 736, 766
Bst6I	CTCTTC	2 cut(s)	196, 641
BstACI	GRCGYC	1 cut(s)	295
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	678, 771
BstDEI	CTNAG	4 cut(s)	94, 112, 420, 450
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	3 cut(s)	222, 445, 538
BstMAI	GTCTC	3 cut(s)	327, 725, 777
BstMBI	GATC	3 cut(s)	219, 442, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 670
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	92, 99, 685
BstV2I	GAAGAC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	627
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	678, 771
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	238, 625
CseI	GACGC	2 cut(s)	20, 284
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	1 cut(s)	440
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	4 cut(s)	94, 112, 420, 450
DpnI	GATC	3 cut(s)	221, 444, 537
DpnII	GATC	3 cut(s)	219, 442, 535
Eam1104I	CTCTTC	2 cut(s)	196, 641
EarI	CTCTTC	2 cut(s)	196, 641
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	81, 302
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	443
FaiI	YATR	8 cut(s)	218, 226, 344, 366, 407, 441, 578, 656
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	4 cut(s)	88, 106, 109, 674
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	88, 106, 109, 674
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	4 cut(s)	88, 106, 109, 674
HaeIII	GGCC	1 cut(s)	627
HgaI	GACGC	2 cut(s)	20, 284
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	158, 360
HinfI	GANTC	4 cut(s)	125, 178, 329, 528
HpaI	GTTAAC	1 cut(s)	388
HphI	GGTGA	2 cut(s)	346, 724
Hpy166II	GTNNAC	2 cut(s)	370, 388
Hpy188I	TCNGA	5 cut(s)	102, 177, 308, 316, 740
Hpy188III	TCNNGA	5 cut(s)	78, 299, 326, 380, 503
Hpy8I	GTNNAC	2 cut(s)	370, 388
Hpy99I	CGWCG	2 cut(s)	300, 766
HpyAV	CCTTC	5 cut(s)	145, 331, 478, 500, 509
HpyCH4III	ACNGT	3 cut(s)	687, 736, 766
HpyCH4V	TGCA	2 cut(s)	439, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 670
HpyF3I	CTNAG	4 cut(s)	94, 112, 420, 450
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	1 cut(s)	443
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	219, 442, 535
LmnI	GCTCC	6 cut(s)	4, 12, 102, 510, 652, 728
LpnPI	CCDG	8 cut(s)	122, 198, 339, 444, 459, 516, 695, 783
Lsp1109I	GCAGC	3 cut(s)	92, 99, 685
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	524
MalI	GATC	3 cut(s)	221, 444, 537
MboI	GATC	3 cut(s)	219, 442, 535
MboII	GAAGA	8 cut(s)	173, 213, 224, 419, 523, 527, 628, 696
MfeI	CAATTG	1 cut(s)	52
MhlI	GDGCHC	3 cut(s)	9, 48, 499
MluCI	AATT	7 cut(s)	52, 66, 81, 302, 317, 666, 776
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	36, 536, 644, 708
MseI	TTAA	3 cut(s)	69, 387, 692
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	494, 670
NdeII	GATC	3 cut(s)	219, 442, 535
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	125, 329, 528
PkrI	GCNGC	4 cut(s)	89, 107, 110, 675
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	2 cut(s)	238, 625
PstNI	CAGNNNCTG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	69, 387, 692
SatI	GCNGC	4 cut(s)	88, 106, 109, 674
Sau3AI	GATC	3 cut(s)	219, 442, 535
Sau96I	GGNCC	2 cut(s)	238, 625
SchI	GAGTC	1 cut(s)	187
SduI	GDGCHC	3 cut(s)	9, 48, 499
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	3 cut(s)	161, 233, 324
SmoI	CTYRAG	3 cut(s)	161, 233, 324
Sse9I	AATT	7 cut(s)	52, 66, 81, 302, 317, 666, 776
SsiI	CCGC	3 cut(s)	10, 109, 241
SspMI	CTAG	1 cut(s)	524
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	687, 736, 766
TaqI	TCGA	3 cut(s)	267, 298, 534
TasI	AATT	7 cut(s)	52, 66, 81, 302, 317, 666, 776
TatI	WGTACW	1 cut(s)	367
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	3 cut(s)	125, 329, 528
Tru1I	TTAA	3 cut(s)	69, 387, 692
Tru9I	TTAA	3 cut(s)	69, 387, 692
TseI	GCWGC	3 cut(s)	87, 105, 673
TspDTI	ATGAA	3 cut(s)	138, 225, 565
TspGWI	ACGGA	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	3 cut(s)	81, 302, 776
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.