Rorug07G0007800

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004426
Physical Location & Seq
Forward (+)
660961 .. 664034
3074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0007800.1

Sequence Viewer

Length: 765 bp
ATGGAGTCGAAGGGAAATGCCCCCAAGATTAAGAATAAGATGAAGCGCAAAGAGATACTTGAGAAGAAGAAGGCTATGGATGAACTGATAAAGGTAGCTTCTGCGGAGAAAGACCATCTCTCTGCCTTTCATGCCTTTCGCCATTACCAAAGAAACGGCTTGTCTGCATGTCTGGAATCAGGAAGAGGGGACAAGCTATCATCTTCTCTTAAGCACTACATTCAAAATCTCCTTAAGGCTAATATGGAGGGGCCATATGGAACCGAGTGGCCAGTGGAAGAGAAGGTGAAGCGTAGGGACATGGTTGCATCAGAAGCACGTTATATATTTGTCTATGAGGCTTTGGATGCAAGTGCAAGTGAATTGTTGACAGTGTCTGAGCAGGAGAGGACTGAAGCTGGTTGTGTGGAGGGGAGGGGATCCATGCTCGGGTTTGTGCATTTTCGCTTTGTCATAGAGGAAGATTTGCCTGTTCTTTATGTGTATGAGTTACAACTTGAGCCTCGTGTACAAGGGAAAGGTCTCGGGAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAATCACATGGATGCTGTTGTTCTAACTGTTCAAAAGGCAAACTTGGTAGCGATGAATTTCTATACAAGTAAGCTGAGATATGTTATCTCAACTATATCACCATCCAAAGTTGATCCATGGTTAGGAACTCAGAAAAGTTATGAAATTCTTTGCAAATCATTCAGTAATGATGCTAAAGCTATCTTGGAGGGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO

Protein Analysis

254

Amino Acids

28.78

Weight (kDa)

8.91

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 136 - 211 9.1e-10 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AclWI GGATC 3 cut(s) 414, 427, 674
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 2 cut(s) 622, 711
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 429, 689
AflII CTTAAG 2 cut(s) 209, 233
AgsI TTSAA 2 cut(s) 224, 599
AluBI AGCT 6 cut(s) 98, 196, 398, 553, 640, 746
AluI AGCT 6 cut(s) 98, 196, 398, 553, 640, 746
Alw26I GTCTC 1 cut(s) 527
AlwI GGATC 3 cut(s) 414, 427, 674
AlwNI CAGNNNCTG 1 cut(s) 377
Ama87I CYCGRG 2 cut(s) 428, 524
AoxI GGCC 3 cut(s) 251, 269, 757
ApaI GGGCCC 1 cut(s) 761
ApoI RAATTY 2 cut(s) 622, 711
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 3 cut(s) 251, 757, 758
AsuHPI GGTGA 2 cut(s) 298, 657
AvaI CYCGRG 2 cut(s) 428, 524
BaeGI GKGCMC 1 cut(s) 761
BalI TGGCCA 1 cut(s) 271
BamHI GGATCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 761
BauI CACGAG 1 cut(s) 504
BccI CCATC 2 cut(s) 123, 676
BceAI ACGGC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 527
BfrI CTTAAG 2 cut(s) 209, 233
BmeT110I CYCGRG 2 cut(s) 428, 524
BmgT120I GGNCC 3 cut(s) 251, 757, 758
BmiI GGNNCC 4 cut(s) 252, 262, 421, 759
BmsI GCATC 4 cut(s) 317, 337, 568, 727
BpuEI CTTGAG 2 cut(s) 80, 518
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 683
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 689
Bse1I ACTGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 683
BseGI GGATG 4 cut(s) 85, 352, 583, 668
BseLI CCNNNNNNNGG 2 cut(s) 429, 689
BseMII CTCAG 3 cut(s) 369, 632, 710
BseNI ACTGG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 761
BshFI GGCC 3 cut(s) 253, 271, 759
BsiHKCI CYCGRG 2 cut(s) 428, 524
BslFI GGGAC 2 cut(s) 203, 311
BslI CCNNNNNNNGG 2 cut(s) 429, 689
BsmAI GTCTC 1 cut(s) 527
BsmFI GGGAC 2 cut(s) 203, 311
BsnI GGCC 3 cut(s) 253, 271, 759
Bso31I GGTCTC 1 cut(s) 527
BsoBI CYCGRG 2 cut(s) 428, 524
Bsp120I GGGCCC 1 cut(s) 757
Bsp1286I GDGCHC 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 2 cut(s) 419, 679
Bsp19I CCATGG 1 cut(s) 683
BspACI CCGC 1 cut(s) 104
BspANI GGCC 3 cut(s) 253, 271, 759
BspCNI CTCAG 3 cut(s) 370, 633, 709
BspLI GGNNCC 4 cut(s) 252, 262, 421, 759
BspPI GGATC 3 cut(s) 414, 427, 674
BspTI CTTAAG 2 cut(s) 209, 233
BspTNI GGTCTC 1 cut(s) 527
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 683
BssMI GATC 2 cut(s) 419, 679
BssSI CACGAG 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 683
Bst2BI CACGAG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 373, 595
Bst6I CTCTTC 2 cut(s) 178, 273
BstAFI CTTAAG 2 cut(s) 209, 233
BstAUI TGTACA 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 562
BstDEI CTNAG 3 cut(s) 378, 641, 696
BstDSI CCRYGG 1 cut(s) 683
BstF5I GGATG 4 cut(s) 85, 352, 583, 668
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 422, 682
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 2 cut(s) 419, 679
BstMWI GCNNNNNNNGC 3 cut(s) 131, 314, 347
BstNSI RCATGY 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 761
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BsuRI GGCC 3 cut(s) 253, 271, 759
BtgI CCRYGG 1 cut(s) 683
BtgZI GCGATG 1 cut(s) 632
BtsCI GGATG 4 cut(s) 85, 352, 583, 668
BtsIMutI CAGTG 2 cut(s) 279, 378
Cac8I GCNNGC 1 cut(s) 562
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 3 cut(s) 251, 757, 758
Csp6I GTAC 1 cut(s) 509
CviAII CATG 7 cut(s) 131, 168, 301, 424, 574, 684, 762
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 3 cut(s) 378, 641, 696
DpnI GATC 2 cut(s) 421, 681
DpnII GATC 2 cut(s) 419, 679
EaeI YGGCCR 1 cut(s) 269
Eam1104I CTCTTC 2 cut(s) 178, 273
EarI CTCTTC 2 cut(s) 178, 273
Eco130I CCWWGG 1 cut(s) 683
Eco24I GRGCYC 1 cut(s) 761
Eco31I GGTCTC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 2 cut(s) 428, 524
EcoO109I RGGNCCY 1 cut(s) 757
EcoT14I CCWWGG 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 683
FaeI CATG 7 cut(s) 134, 171, 304, 427, 577, 687, 765
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 593, 625
FaqI GGGAC 2 cut(s) 203, 311
FatI CATG 7 cut(s) 130, 167, 300, 423, 573, 683, 761
FauNDI CATATG 1 cut(s) 256
FokI GGATG 4 cut(s) 92, 359, 590, 655
FriOI GRGCYC 1 cut(s) 761
GlaI GCGC 1 cut(s) 47
HaeIII GGCC 3 cut(s) 253, 271, 759
HhaI GCGC 1 cut(s) 48
Hin1II CATG 7 cut(s) 134, 171, 304, 427, 577, 687, 765
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 3 cut(s) 5, 176, 568
HphI GGTGA 2 cut(s) 298, 657
Hpy166II GTNNAC 2 cut(s) 369, 509
Hpy188I TCNGA 3 cut(s) 313, 379, 699
Hpy188III TCNNGA 3 cut(s) 173, 180, 526
Hpy8I GTNNAC 2 cut(s) 369, 509
HpyAV CCTTC 3 cut(s) 4, 64, 277
HpyCH4III ACNGT 2 cut(s) 373, 595
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 7 cut(s) 167, 308, 350, 356, 439, 541, 720
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 314, 347
HpyF3I CTNAG 3 cut(s) 378, 641, 696
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 7 cut(s) 134, 171, 304, 427, 577, 687, 765
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 419, 679
LpnPI CCDG 6 cut(s) 158, 165, 285, 368, 384, 483
LweI GCATC 4 cut(s) 317, 337, 568, 727
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 489
MalI GATC 2 cut(s) 421, 681
MboI GATC 2 cut(s) 419, 679
MboII GAAGA 6 cut(s) 76, 79, 195, 195, 290, 473
MflI RGATCY 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 761
MlsI TGGCCA 1 cut(s) 271
MluCI AATT 5 cut(s) 362, 546, 555, 622, 711
MluNI TGGCCA 1 cut(s) 271
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 9 cut(s) 179, 241, 331, 381, 403, 408, 451, 513, 748
Mox20I TGGCCA 1 cut(s) 271
MscI TGGCCA 1 cut(s) 271
MseI TTAA 3 cut(s) 30, 210, 234
MslI CAYNNNNRTG 1 cut(s) 576
Msp20I TGGCCA 1 cut(s) 271
MspCI CTTAAG 2 cut(s) 209, 233
MwoI GCNNNNNNNGC 3 cut(s) 131, 314, 347
NcoI CCATGG 1 cut(s) 683
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 419, 679
NlaIII CATG 7 cut(s) 134, 171, 304, 427, 577, 687, 765
NlaIV GGNNCC 4 cut(s) 252, 262, 421, 759
NspI RCATGY 1 cut(s) 171
PfeI GAWTC 2 cut(s) 176, 568
PflFI GACNNNGTC 1 cut(s) 373
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 4 cut(s) 252, 262, 421, 759
PspOMI GGGCCC 1 cut(s) 757
PspPI GGNCC 3 cut(s) 251, 757, 758
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 373
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 3 cut(s) 30, 210, 234
Sau3AI GATC 2 cut(s) 419, 679
Sau96I GGNCC 3 cut(s) 251, 757, 758
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 761
SfaNI GCATC 4 cut(s) 317, 337, 568, 727
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 4 cut(s) 59, 209, 233, 497
SmoI CTYRAG 4 cut(s) 59, 209, 233, 497
Sse9I AATT 5 cut(s) 362, 546, 555, 622, 711
SsiI CCGC 1 cut(s) 104
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 2 cut(s) 373, 595
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 8
TasI AATT 5 cut(s) 362, 546, 555, 622, 711
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 2 cut(s) 176, 568
Tru1I TTAA 3 cut(s) 30, 210, 234
Tru9I TTAA 3 cut(s) 30, 210, 234
TscAI CASTG 2 cut(s) 279, 378
TspDTI ATGAA 5 cut(s) 56, 96, 119, 635, 723
TspRI CASTG 2 cut(s) 279, 378
Tth111I GACNNNGTC 1 cut(s) 373
Vha464I CTTAAG 2 cut(s) 209, 233
XapI RAATTY 2 cut(s) 622, 711
XceI RCATGY 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.