Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Reverse (-)

56386929 .. 56391034

Gene Structure 4106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCTTCGGCCTCGTCGGCGATCGTCGAGTGCGGCCGGATGGGTTGCGGTGTGAGTGAGCGGCGATTGGGGCTGAATGGGCTCCTTATGCCATGGTTTTGGCTGGCGGCGGGTGTCGACACGGGCGCAGGGTTCGCGGGCGGATGGTGGAGCCCGATCGGGATTCTTTCGGATCTCGCCGCATTCGTCGGGTTTGTGGTCGGGTTTCGTATCCGTGCTTGTGGTTTCTATGGTTTGATCTATTCGGATCTTGCCATAAAATCATTGGAGTTTGGATTGATCTCAATGCTTACGGCGGAGGACGGTGAAGAGCAGTATGGACCGGCTTTCGGTGCGTGCGGTGGAGGGCGGTTTGAGGCACTCGAAGACATCGCCCTCCGCAGAAATGGCGTTGTTCTTCTTCTTCTTTACACCACTTACCCAGAAATGGAGCTCCGCCTGTGTAATCCATTTCGTCACATTATTCCTCTTCCTTCAAATTACTCCAATCAAATTACATCTTGCTCCCGAGCTCGTAGCTTATCGGTTCGAAGCTCCCACTTAGGCCCCAACGAATCACGCAAGCTAGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATCATCAAAGTCTTCCAATAGGCAAAAATGGAAGAGATGATGAGGACTTCATTCTCTGGTTTCTCAAGGACCGAAAATTTTCAGTCCAAGAATCAGTTGAAAAATTGCACAAGGCAATTAAATGGCGTCAAGAATTTGGCGTGTCTGAGTTGTCTCAAGATTCAGTGAAGAACATTGCTGAAACTGGAAAAGCTTATGTGCACGACTTTCTGGATGTTAATGGTAGACCAGTTCTTATAGTGGATGCTGCTAAGCATTTTCCTGCTGTGCATGATCCTGCTGAGAATGAGAAGCTCTGCGTATTTTTGATTGAGAAGGCATTGAGTGCCCTTCCTGAAGGGAGAGAAGAAATACTCGGAATCTTTGATCTCCGCGGCTTCGGTACAGCGAATTCTGATATAAAGTTTATAACATTTTTGTTTGATGTATTCTACTATTATTACCCAAAGCGATTGGGCCAAGTCCTCTTCGTGGATGCTCCATTTATATTCAAACCTATTTGGCAGCTTGCAAAACCCTTGTTGAAATCATATGCTTCGGTGGTGAGGTTTTGCTCTGTGGAGACTGTCAGGAAGGAATATTTTACAGAAGCAACAGTACCGGCCAAATTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

405

Amino Acids

45.34

Weight (kDa)

6.43

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	260 - 399	2.5e-25	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	274 - 386	1.4e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1007
AccBSI	CCGCTC	1 cut(s)	61
AccI	GTMKAC	2 cut(s)	117, 823
AccII	CGCG	2 cut(s)	137, 972
AclWI	GGATC	3 cut(s)	180, 255, 866
AcoI	YGGCCR	2 cut(s)	34, 1200
AcsI	RAATTY	4 cut(s)	674, 731, 988, 1205
AcuI	CTGAAG	1 cut(s)	954
AcyI	GRCGYC	1 cut(s)	724
AfaI	GTAC	2 cut(s)	982, 1197
AfiI	CCNNNNNNNGG	3 cut(s)	329, 427, 1069
AgsI	TTSAA	4 cut(s)	477, 698, 1090, 1123
AluBI	AGCT	9 cut(s)	433, 512, 519, 534, 565, 589, 791, 892, 1105
AluI	AGCT	9 cut(s)	433, 512, 519, 534, 565, 589, 791, 892, 1105
Alw21I	GWGCWC	3 cut(s)	435, 514, 801
Alw26I	GTCTC	3 cut(s)	756, 1154, 1206
Alw44I	GTGCAC	1 cut(s)	797
AlwI	GGATC	3 cut(s)	180, 255, 866
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	5 cut(s)	9, 34, 544, 1054, 1200
ApaLI	GTGCAC	1 cut(s)	797
ApeKI	GCWGC	2 cut(s)	845, 1102
ApoI	RAATTY	4 cut(s)	674, 731, 988, 1205
Asp700I	GAANNNNTTC	1 cut(s)	676
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	4 cut(s)	320, 545, 667, 1054
AsuHPI	GGTGA	2 cut(s)	317, 1153
AsuII	TTCGAA	1 cut(s)	529
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	2 cut(s)	320, 667
BaeGI	GKGCMC	2 cut(s)	801, 928
BanII	GRGCYC	4 cut(s)	84, 155, 435, 514
BarI	GAAGNNNNNNTAC	2 cut(s)	1179, 1211
BbsI	GAAGAC	2 cut(s)	372, 602
Bbv12I	GWGCWC	3 cut(s)	435, 514, 801
BbvI	GCAGC	2 cut(s)	832, 1114
BccI	CCATC	2 cut(s)	34, 138
BceAI	ACGGC	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	756, 1154, 1206
BfaI	CTAG	1 cut(s)	566
BfuI	GTATCC	1 cut(s)	221
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	7 cut(s)	34, 62, 108, 180, 846, 973, 1103
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	7 cut(s)	35, 63, 109, 181, 847, 974, 1104
Bme18I	GGWCC	2 cut(s)	320, 667
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	4 cut(s)	320, 545, 667, 1054
BmiI	GGNNCC	3 cut(s)	83, 152, 547
BmsI	GCATC	2 cut(s)	832, 1063
BpiI	GAAGAC	2 cut(s)	372, 602
Bpu1102I	GCTNAGC	1 cut(s)	849
Bpu14I	TTCGAA	1 cut(s)	529
BpuEI	CTTGAG	3 cut(s)	611, 647, 738
BsaHI	GRCGYC	1 cut(s)	724
BsaJI	CCNNGG	2 cut(s)	92, 970
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 427, 1069
Bse118I	RCCGGY	2 cut(s)	322, 1198
Bse1I	ACTGG	2 cut(s)	787, 827
Bse3DI	GCAATG	1 cut(s)	771
BseDI	CCNNGG	2 cut(s)	92, 970
BseGI	GGATG	5 cut(s)	45, 149, 817, 847, 1078
BseLI	CCNNNNNNNGG	3 cut(s)	329, 427, 1069
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	735, 870
BseNI	ACTGG	2 cut(s)	787, 827
BseSI	GKGCMC	2 cut(s)	801, 928
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	832, 1114
Bsh1236I	CGCG	2 cut(s)	137, 972
Bsh1285I	CGRYCG	3 cut(s)	24, 37, 159
BshFI	GGCC	5 cut(s)	11, 36, 546, 1056, 1202
BsiEI	CGRYCG	3 cut(s)	24, 37, 159
BsiHKAI	GWGCWC	3 cut(s)	435, 514, 801
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	3 cut(s)	37, 323, 1199
BslI	CCNNNNNNNGG	3 cut(s)	329, 427, 1069
BsmAI	GTCTC	3 cut(s)	756, 1154, 1206
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	5 cut(s)	11, 36, 546, 1056, 1202
BsoBI	CYCGRG	1 cut(s)	507
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	6 cut(s)	84, 155, 435, 514, 801, 928
Bsp143I	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
Bsp1720I	GCTNAGC	1 cut(s)	849
Bsp19I	CCATGG	1 cut(s)	92
BspANI	GGCC	5 cut(s)	11, 36, 546, 1056, 1202
BspCNI	CTCAG	2 cut(s)	736, 871
BspFNI	CGCG	2 cut(s)	137, 972
BspLI	GGNNCC	3 cut(s)	83, 152, 547
BspPI	GGATC	3 cut(s)	180, 255, 866
BspQI	GCTCTTC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	2 cut(s)	322, 1198
BsrI	ACTGG	2 cut(s)	787, 827
BssAI	RCCGGY	2 cut(s)	322, 1198
BssECI	CCNNGG	2 cut(s)	92, 970
BssMI	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
BssNI	GRCGYC	1 cut(s)	724
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	305, 1165, 1195
Bst6I	CTCTTC	4 cut(s)	303, 474, 625, 1070
BstACI	GRCGYC	1 cut(s)	724
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	5 cut(s)	105, 139, 337, 563, 1107
BstDEI	CTNAG	4 cut(s)	541, 744, 849, 879
BstDSI	CCRYGG	2 cut(s)	92, 970
BstF5I	GGATG	5 cut(s)	45, 149, 817, 847, 1078
BstFNI	CGCG	2 cut(s)	137, 972
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	9 cut(s)	24, 159, 175, 240, 250, 282, 601, 874, 967
BstMAI	GTCTC	3 cut(s)	756, 1154, 1206
BstMBI	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
BstMCI	CGRYCG	3 cut(s)	24, 37, 159
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 70, 79, 88, 134, 332, 387, 923
BstSLI	GKGCMC	2 cut(s)	801, 928
BstUI	CGCG	2 cut(s)	137, 972
BstV1I	GCAGC	2 cut(s)	832, 1114
BstV2I	GAAGAC	2 cut(s)	372, 602
BstX2I	RGATCY	2 cut(s)	172, 247
BstXI	CCANNNNNNTGG	1 cut(s)	99
BstYI	RGATCY	2 cut(s)	172, 247
BstZI	CGGCCG	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	5 cut(s)	11, 36, 546, 1056, 1202
BtgI	CCRYGG	2 cut(s)	92, 970
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	5 cut(s)	45, 149, 817, 847, 1078
BtsIMutI	CAGTG	1 cut(s)	768
Cac8I	GCNNGC	5 cut(s)	105, 139, 337, 563, 1107
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	2 cut(s)	322, 1198
Cfr13I	GGNCC	4 cut(s)	320, 545, 667, 1054
Cfr42I	CCGCGG	1 cut(s)	973
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	2 cut(s)	981, 1196
CviAII	CATG	2 cut(s)	93, 869
CviQI	GTAC	2 cut(s)	981, 1196
DdeI	CTNAG	4 cut(s)	541, 744, 849, 879
DpnI	GATC	9 cut(s)	23, 158, 174, 239, 249, 281, 600, 873, 966
DpnII	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
EaeI	YGGCCR	2 cut(s)	34, 1200
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	4 cut(s)	303, 474, 625, 1070
EarI	CTCTTC	4 cut(s)	303, 474, 625, 1070
EciI	GGCGGA	3 cut(s)	156, 311, 425
Ecl136II	GAGCTC	2 cut(s)	433, 512
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	4 cut(s)	84, 155, 435, 514
Eco47I	GGWCC	2 cut(s)	320, 667
Eco52I	CGGCCG	1 cut(s)	34
Eco53kI	GAGCTC	2 cut(s)	433, 512
Eco57I	CTGAAG	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	507
EcoICRI	GAGCTC	2 cut(s)	433, 512
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	4 cut(s)	84, 155, 435, 514
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	96, 872
FatI	CATG	2 cut(s)	92, 868
FauI	CCCGC	2 cut(s)	103, 130
FauNDI	CATATG	1 cut(s)	1129
FblI	GTMKAC	2 cut(s)	117, 823
Fnu4HI	GCNGC	7 cut(s)	34, 62, 108, 180, 846, 973, 1103
FokI	GGATG	5 cut(s)	52, 156, 824, 854, 1085
FriOI	GRGCYC	4 cut(s)	84, 155, 435, 514
Fsp4HI	GCNGC	7 cut(s)	34, 62, 108, 180, 846, 973, 1103
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	7 cut(s)	34, 62, 108, 180, 846, 973, 1103
HaeIII	GGCC	5 cut(s)	11, 36, 546, 1056, 1202
HapII	CCGG	3 cut(s)	37, 323, 1199
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	724
Hin1II	CATG	2 cut(s)	96, 872
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	587, 789
HinfI	GANTC	5 cut(s)	163, 554, 689, 758, 957
HpaII	CCGG	3 cut(s)	37, 323, 1199
HphI	GGTGA	2 cut(s)	317, 1153
Hpy166II	GTNNAC	3 cut(s)	118, 799, 824
Hpy188I	TCNGA	5 cut(s)	172, 247, 745, 956, 994
Hpy188III	TCNNGA	7 cut(s)	160, 507, 728, 755, 809, 932, 1168
Hpy8I	GTNNAC	3 cut(s)	118, 799, 824
Hpy99I	CGWCG	3 cut(s)	19, 29, 191
HpyAV	CCTTC	6 cut(s)	483, 574, 907, 929, 938, 1165
HpyCH4III	ACNGT	3 cut(s)	305, 1165, 1195
HpyCH4V	TGCA	4 cut(s)	706, 799, 868, 1109
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 70, 79, 88, 134, 332, 387, 923
HpyF3I	CTNAG	4 cut(s)	541, 744, 849, 879
Hsp92I	GRCGYC	1 cut(s)	724
Hsp92II	CATG	2 cut(s)	96, 872
HspAI	GCGC	1 cut(s)	126
KspI	CCGCGG	1 cut(s)	973
Kzo9I	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	7 cut(s)	87, 150, 430, 438, 509, 539, 1081
Lsp1109I	GCAGC	2 cut(s)	832, 1114
LweI	GCATC	2 cut(s)	832, 1063
MaeI	CTAG	1 cut(s)	566
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	9 cut(s)	23, 158, 174, 239, 249, 281, 600, 873, 966
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
MflI	RGATCY	2 cut(s)	172, 247
MhlI	GDGCHC	6 cut(s)	84, 155, 435, 514, 801, 928
MluCI	AATT	8 cut(s)	478, 492, 674, 701, 714, 731, 988, 1205
MnlI	CCTC	9 cut(s)	22, 292, 338, 349, 386, 477, 634, 1073, 1137
MroXI	GAANNNNTTC	1 cut(s)	676
MseI	TTAA	2 cut(s)	717, 816
MspA1I	CMGCKG	1 cut(s)	972
MspI	CCGG	3 cut(s)	37, 323, 1199
Mva1269I	GAATGC	1 cut(s)	182
MvnI	CGCG	2 cut(s)	137, 972
MwoI	GCNNNNNNNGC	8 cut(s)	17, 70, 79, 88, 134, 332, 387, 923
NcoI	CCATGG	1 cut(s)	92
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
NlaIII	CATG	2 cut(s)	96, 872
NlaIV	GGNNCC	3 cut(s)	83, 152, 547
NmuCI	GTSAC	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	529
PciSI	GCTCTTC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	676
PfeI	GAWTC	5 cut(s)	163, 554, 689, 758, 957
PkrI	GCNGC	7 cut(s)	35, 63, 109, 181, 847, 974, 1104
Ple19I	CGATCG	2 cut(s)	24, 159
PsiI	TTATAA	1 cut(s)	1007
Psp124BI	GAGCTC	2 cut(s)	435, 514
PspN4I	GGNNCC	3 cut(s)	83, 152, 547
PspPI	GGNCC	4 cut(s)	320, 545, 667, 1054
PsuI	RGATCY	2 cut(s)	172, 247
PvuI	CGATCG	2 cut(s)	24, 159
RsaI	GTAC	2 cut(s)	982, 1197
RsaNI	GTAC	2 cut(s)	981, 1196
SacI	GAGCTC	2 cut(s)	435, 514
SacII	CCGCGG	1 cut(s)	973
SalI	GTCGAC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	717, 816
SatI	GCNGC	7 cut(s)	34, 62, 108, 180, 846, 973, 1103
Sau3AI	GATC	9 cut(s)	21, 156, 172, 237, 247, 279, 598, 871, 964
Sau96I	GGNCC	4 cut(s)	320, 545, 667, 1054
SduI	GDGCHC	6 cut(s)	84, 155, 435, 514, 801, 928
SfaNI	GCATC	2 cut(s)	832, 1063
Sfr303I	CCGCGG	1 cut(s)	973
SfuI	TTCGAA	1 cut(s)	529
SgrBI	CCGCGG	1 cut(s)	973
SinI	GGWCC	2 cut(s)	320, 667
SmlI	CTYRAG	3 cut(s)	590, 662, 753
SmoI	CTYRAG	3 cut(s)	590, 662, 753
Sse9I	AATT	8 cut(s)	478, 492, 674, 701, 714, 731, 988, 1205
SspI	AATATT	1 cut(s)	1178
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	2 cut(s)	435, 514
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	3 cut(s)	305, 1165, 1195
TaqI	TCGA	4 cut(s)	27, 117, 363, 529
TaqII	GACCGA	1 cut(s)	684
TasI	AATT	8 cut(s)	478, 492, 674, 701, 714, 731, 988, 1205
TauI	GCSGC	5 cut(s)	36, 64, 110, 182, 975
TfiI	GAWTC	5 cut(s)	163, 554, 689, 758, 957
Tru1I	TTAA	2 cut(s)	717, 816
Tru9I	TTAA	2 cut(s)	717, 816
TscAI	CASTG	1 cut(s)	768
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	2 cut(s)	845, 1102
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	637
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	768
VneI	GTGCAC	1 cut(s)	797
VpaK11BI	GGWCC	2 cut(s)	320, 667
XapI	RAATTY	4 cut(s)	674, 731, 988, 1205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	2 cut(s)	117, 823
XmnI	GAANNNNTTC	1 cut(s)	676
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.