Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000002.1

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Reverse (-)

12368 .. 14963

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000002.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgaagataagacaagcgcacgtgtttcccacacgtggaggcactcgaagactcatcgccctccgcagaagtggtgttgttcttcttcgtctttacaccacttacccagaaatggagctccgcctgtgtaatccatttcgtcacattattcctcttccttcaaattactccaatcaaattacatcttcctcccgagctcgtagcttatcggttcgaagctcccacttaggccccaacgaatcacgcaagctagttttggaagtgaaggagaagcttgagaaagatcatcaaagtcttccggtaggcaaaaatggaagagatgatgaggacttcattctctggtttctcaaggaccgaaaattttcagtccaagaatcagttgaaaaattgcacaaggcaattgtatccttcactctcgaatttggcgtgtctgagttgtctcaagattcagtgaagaacattgctgaaactggaaaggcttatgtgcacgactttctggatgttaatggtagaccagttcttatagtggatgctgctaagcattttcctgctgtgcatgatcctgctgagaatgagaagctctgtgtatttttgattgagaaggcattgagtgcccttcctgaagggagagaagaaatactcggaatctttgatctccgaggcttcggtacagagaattctgatttaaagtttttaacatttttgtttgatgtattctactgttattacccaaagagattgggccaagtcctcttcgtggatgctccttttatattcaaacctatttggcagcttgcaaaacccttgttgaaatcatatgcttcggtggtgaggttttgctctgtggagactgtcaggaaggaatattttacagaagcaacactaccggccaaatttagagactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

301

Amino Acids

34.53

Weight (kDa)

9.13

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	511
AciI	CCGC	2 cut(s)	64, 121
AclWI	GGATC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	4 cut(s)	359, 419, 676, 893
AcuI	CTGAAG	1 cut(s)	642
AcvI	CACGTG	2 cut(s)	22, 35
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	3 cut(s)	35, 112, 757
AflIII	ACRYGT	2 cut(s)	21, 32
AgsI	TTSAA	4 cut(s)	162, 383, 778, 811
AluBI	AGCT	8 cut(s)	118, 197, 204, 219, 250, 274, 580, 793
AluI	AGCT	8 cut(s)	118, 197, 204, 219, 250, 274, 580, 793
Alw21I	GWGCWC	3 cut(s)	120, 199, 489
Alw26I	GTCTC	3 cut(s)	444, 842, 894
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	3 cut(s)	229, 742, 888
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	2 cut(s)	533, 790
ApoI	RAATTY	4 cut(s)	359, 419, 676, 893
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	230, 352, 742
AsuHPI	GGTGA	1 cut(s)	841
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	2 cut(s)	489, 616
BanII	GRGCYC	2 cut(s)	120, 199
BarI	GAAGNNNNNNTAC	2 cut(s)	867, 899
BbrPI	CACGTG	2 cut(s)	22, 35
BbsI	GAAGAC	2 cut(s)	55, 287
Bbv12I	GWGCWC	3 cut(s)	120, 199, 489
BbvI	GCAGC	2 cut(s)	520, 802
BciVI	GTATCC	1 cut(s)	415
BcoDI	GTCTC	3 cut(s)	444, 842, 894
BfaI	CTAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	415
BisI	GCNGC	2 cut(s)	534, 791
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	2 cut(s)	535, 792
Bme18I	GGWCC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	230, 352, 742
BmiI	GGNNCC	1 cut(s)	232
BmsI	GCATC	2 cut(s)	520, 751
BpiI	GAAGAC	2 cut(s)	55, 287
Bpu1102I	GCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	3 cut(s)	296, 332, 426
BsaAI	YACGTR	2 cut(s)	22, 35
BsaJI	CCNNGG	1 cut(s)	658
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 112, 757
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	2 cut(s)	475, 515
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	3 cut(s)	505, 535, 766
BseLI	CCNNNNNNNGG	3 cut(s)	35, 112, 757
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	423, 558
BseNI	ACTGG	2 cut(s)	475, 515
BseSI	GKGCMC	2 cut(s)	489, 616
BseXI	GCAGC	2 cut(s)	520, 802
BshFI	GGCC	3 cut(s)	231, 744, 890
BsiHKAI	GWGCWC	3 cut(s)	120, 199, 489
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	299, 887
BslI	CCNNNNNNNGG	3 cut(s)	35, 112, 757
BsmAI	GTCTC	3 cut(s)	444, 842, 894
BsnI	GGCC	3 cut(s)	231, 744, 890
BsoBI	CYCGRG	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	4 cut(s)	120, 199, 489, 616
Bsp143I	GATC	3 cut(s)	283, 559, 652
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	2 cut(s)	64, 121
BspANI	GGCC	3 cut(s)	231, 744, 890
BspCNI	CTCAG	2 cut(s)	424, 559
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	554
BspT104I	TTCGAA	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	886
BsrI	ACTGG	2 cut(s)	475, 515
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	3 cut(s)	283, 559, 652
Bst4CI	ACNGT	2 cut(s)	722, 853
Bst6I	CTCTTC	3 cut(s)	159, 310, 758
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	2 cut(s)	22, 35
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	248, 795
BstDEI	CTNAG	4 cut(s)	226, 432, 537, 567
BstF5I	GGATG	3 cut(s)	505, 535, 766
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	286, 562, 655
BstMAI	GTCTC	3 cut(s)	444, 842, 894
BstMBI	GATC	3 cut(s)	283, 559, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstSLI	GKGCMC	2 cut(s)	489, 616
BstV1I	GCAGC	2 cut(s)	520, 802
BstV2I	GAAGAC	2 cut(s)	55, 287
BsuI	GTATCC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	231, 744, 890
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	505, 535, 766
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	248, 795
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	886
Cfr13I	GGNCC	3 cut(s)	230, 352, 742
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	1 cut(s)	557
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	4 cut(s)	226, 432, 537, 567
DpnI	GATC	3 cut(s)	285, 561, 654
DpnII	GATC	3 cut(s)	283, 559, 652
DraI	TTTAAA	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	3 cut(s)	159, 310, 758
EarI	CTCTTC	3 cut(s)	159, 310, 758
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	2 cut(s)	118, 197
Eco24I	GRGCYC	2 cut(s)	120, 199
Eco47I	GGWCC	1 cut(s)	352
Eco53kI	GAGCTC	2 cut(s)	118, 197
Eco57I	CTGAAG	1 cut(s)	642
Eco72I	CACGTG	2 cut(s)	22, 35
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	2 cut(s)	118, 197
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	120, 199
FaeI	CATG	1 cut(s)	560
FaiI	YATR	6 cut(s)	483, 524, 558, 773, 817, 819
FatI	CATG	1 cut(s)	556
FauNDI	CATATG	1 cut(s)	817
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	534, 791
FokI	GGATG	3 cut(s)	512, 542, 773
FriOI	GRGCYC	2 cut(s)	120, 199
Fsp4HI	GCNGC	2 cut(s)	534, 791
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	534, 791
HaeIII	GGCC	3 cut(s)	231, 744, 890
HapII	CCGG	2 cut(s)	299, 887
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	560
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	5 cut(s)	51, 239, 374, 446, 645
HpaII	CCGG	2 cut(s)	299, 887
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	2 cut(s)	487, 512
Hpy188I	TCNGA	4 cut(s)	433, 644, 659, 682
Hpy188III	TCNNGA	6 cut(s)	192, 416, 443, 497, 620, 856
Hpy8I	GTNNAC	2 cut(s)	487, 512
HpyAV	CCTTC	7 cut(s)	168, 259, 418, 595, 617, 626, 853
HpyCH4III	ACNGT	2 cut(s)	722, 853
HpyCH4IV	ACGT	2 cut(s)	21, 34
HpyCH4V	TGCA	4 cut(s)	391, 487, 556, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	4 cut(s)	226, 432, 537, 567
HpySE526I	ACGT	2 cut(s)	21, 34
Hsp92II	CATG	1 cut(s)	560
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	283, 559, 652
LmnI	GCTCC	4 cut(s)	115, 123, 224, 769
Lsp1109I	GCAGC	2 cut(s)	520, 802
LweI	GCATC	2 cut(s)	520, 751
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	21, 34
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	285, 561, 654
MboI	GATC	3 cut(s)	283, 559, 652
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	4 cut(s)	120, 199, 489, 616
MluCI	AATT	8 cut(s)	163, 177, 359, 386, 399, 419, 676, 893
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	8 cut(s)	32, 71, 162, 199, 319, 653, 761, 825
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	3 cut(s)	504, 686, 695
MspI	CCGG	2 cut(s)	299, 887
MunI	CAATTG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	3 cut(s)	283, 559, 652
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	239, 374, 446, 645
PkrI	GCNGC	2 cut(s)	535, 792
PleI	GAGTC	1 cut(s)	45
PmaCI	CACGTG	2 cut(s)	22, 35
PmlI	CACGTG	2 cut(s)	22, 35
PpsI	GAGTC	1 cut(s)	45
Ppu21I	YACGTR	2 cut(s)	22, 35
Psp124BI	GAGCTC	2 cut(s)	120, 199
PspCI	CACGTG	2 cut(s)	22, 35
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	230, 352, 742
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
SacI	GAGCTC	2 cut(s)	120, 199
SaqAI	TTAA	3 cut(s)	504, 686, 695
SatI	GCNGC	2 cut(s)	534, 791
Sau3AI	GATC	3 cut(s)	283, 559, 652
Sau96I	GGNCC	3 cut(s)	230, 352, 742
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	4 cut(s)	120, 199, 489, 616
SfaNI	GCATC	2 cut(s)	520, 751
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	3 cut(s)	275, 347, 441
SmoI	CTYRAG	3 cut(s)	275, 347, 441
Sse9I	AATT	8 cut(s)	163, 177, 359, 386, 399, 419, 676, 893
SsiI	CCGC	2 cut(s)	64, 121
SspI	AATATT	1 cut(s)	866
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	2 cut(s)	120, 199
TaaI	ACNGT	2 cut(s)	722, 853
TaiI	ACGT	2 cut(s)	24, 37
TaqI	TCGA	3 cut(s)	46, 214, 417
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	8 cut(s)	163, 177, 359, 386, 399, 419, 676, 893
TfiI	GAWTC	4 cut(s)	239, 374, 446, 645
Tru1I	TTAA	3 cut(s)	504, 686, 695
Tru9I	TTAA	3 cut(s)	504, 686, 695
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	533, 790
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	17, 322
TspRI	CASTG	1 cut(s)	456
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	4 cut(s)	359, 419, 676, 893
XmiI	GTMKAC	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.