Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004426

Physical Location & Seq

Genomic Coordinates Forward (+)

26944677 .. 26947525

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1176400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGCTCCGCAGTATCTGTAATCCTCTGCGTCATCTTCCTGTGCTCTCCAATTGTTCCCATCAAATTAAATCGTCCCGAATTCGCAGCTTCTCAGTTCGGAGCTGCCGCTTAGACCCCAATGAATCACACAAGTTGCAGCTGGTTTTGGAAGTGAAGGAGAAGCTTGAGAAAGATTATCAGAGTCTTCCTGTAGGGAAAAATGGAAGAGATGATGAAGATATGATCCTATGGTTTCTCAAGGACCGCAAGTTTTCAGTCGAAGATGCTGTCGAAAGATTGAATAAAGCAATCAAATGGCGTCGAGAATTCAGAGTGTCCGAATTGTCTCAAGATTCGGTGAAGGGTATAGCCGAAACTGGAAAAGCTTACGTACATGACTTTCTTGATGTTAACGGCAGACCAGTTCTCATAGTGGATGCTTCTAAGCATCTTCCTGCTGTGCATGATCCTGCTGAGAATGAGAAGCTCTGCGTGTTTTTGATTGAGAAGGCATTGAGTGCCCTTCCAGAAGGGAGCGAAGAAATACTAGGAATATTCAATCTACGAGCGTTTGGTAGAGAAAATGCAGATTTAGATTTCATTACATTTTTGTTTGATGTTTTCTACTACTATTATCCAAAGCGATTGGGCCAAGTCCTCTTCGTGGAAGCTCCATTTATATTCAAGCCAATTTGGCAGCTCGCCAAACCGTTGTTAAAATCTTATTCTTCGCTGGTGAGGTTTTGCTCCGTGGAGACCGTCAGAAAGGAGTATTTTACAGAAGCGACGGTGCCTGCTAAATTTAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

265

Amino Acids

30.6

Weight (kDa)

8.18

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	119 - 254	3.4e-22	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	133 - 238	7.7e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63060 AT5G63060
fragaria_vesca	FvH4_1g22320 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710 FvH4_5g05710
malus_domestica	MD06G1170600.v1.1 MD14G1176400.v1.1
prunus_persica	Prupe.5G170200_v2.0.a1
pyrus_communis	pycom06g15200 pycom14g14730
rosa_chinensis	RchiOBHm_Chr7g0193121
rosa_laevigata	RLG00000004295 RLG00000020621
rosa_multiflora	Rmu_ssc0000002.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262360
rosa_rugosa	Rorug07G0007600 Rorug07G0007700 Rorug07G0007800
rosa_samantha	Rh3AG325600 Rh7AG132800 Rh7BG133900 Rh7CG136800 Rh7DG134700
rosa_wichuraiana	Rw7G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	772
AciI	CCGC	3 cut(s)	10, 109, 247
AclWI	GGATC	2 cut(s)	220, 443
AcsI	RAATTY	3 cut(s)	81, 308, 782
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	3 cut(s)	283, 541, 667
AluBI	AGCT	9 cut(s)	7, 90, 105, 142, 166, 368, 469, 653, 682
AluI	AGCT	9 cut(s)	7, 90, 105, 142, 166, 368, 469, 653, 682
Alw21I	GWGCWC	2 cut(s)	9, 48
Alw26I	GTCTC	3 cut(s)	333, 731, 783
AlwI	GGATC	2 cut(s)	220, 443
AlwNI	CAGNNNCTG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	4 cut(s)	87, 105, 139, 679
ApoI	RAATTY	3 cut(s)	81, 308, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AspS9I	GGNCC	2 cut(s)	244, 631
AsuHPI	GGTGA	2 cut(s)	352, 730
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	9, 48
BbvI	GCAGC	4 cut(s)	92, 99, 151, 691
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	412
BcoDI	GTCTC	3 cut(s)	333, 731, 783
BfaI	CTAG	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	192
BglI	GCCNNNNNGGC	1 cut(s)	676
BisI	GCNGC	5 cut(s)	88, 106, 109, 140, 680
BlsI	GCNGC	5 cut(s)	89, 107, 110, 141, 681
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	244, 631
BmiI	GGNNCC	1 cut(s)	774
BmsI	GCATC	3 cut(s)	256, 409, 439
BpiI	GAAGAC	1 cut(s)	179
BpuEI	CTTGAG	3 cut(s)	188, 224, 315
BsaAI	YACGTR	1 cut(s)	373
BsaHI	GRCGYC	1 cut(s)	301
BsaI	GGTCTC	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	2 cut(s)	364, 404
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	108, 447
BseNI	ACTGG	2 cut(s)	364, 404
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	4 cut(s)	92, 99, 151, 691
BshFI	GGCC	1 cut(s)	633
BshNI	GGYRCC	1 cut(s)	772
BsiHKAI	GWGCWC	2 cut(s)	9, 48
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	3 cut(s)	333, 731, 783
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	1 cut(s)	731
Bsp1286I	GDGCHC	3 cut(s)	9, 48, 505
Bsp143I	GATC	2 cut(s)	225, 448
BspACI	CCGC	3 cut(s)	10, 109, 247
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	2 cut(s)	107, 448
BspLI	GGNNCC	1 cut(s)	774
BspPI	GGATC	2 cut(s)	220, 443
BspT107I	GGYRCC	1 cut(s)	772
BspTNI	GGTCTC	1 cut(s)	731
BsrI	ACTGG	2 cut(s)	364, 404
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	2 cut(s)	225, 448
BssNI	GRCGYC	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	693, 742, 772
Bst6I	CTCTTC	2 cut(s)	202, 647
BstACI	GRCGYC	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	684, 777
BstDEI	CTNAG	4 cut(s)	94, 112, 426, 456
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	2 cut(s)	228, 451
BstMAI	GTCTC	3 cut(s)	333, 731, 783
BstMBI	GATC	2 cut(s)	225, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 676
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	505
BstSNI	TACGTA	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	92, 99, 151, 691
BstV2I	GAAGAC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	633
BtgI	CCRYGG	1 cut(s)	732
BtsCI	GGATG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	684, 777
CaiI	CAGNNNCTG	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	244, 631
CseI	GACGC	2 cut(s)	20, 290
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	2 cut(s)	377, 446
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	4 cut(s)	94, 112, 426, 456
DpnI	GATC	2 cut(s)	227, 450
DpnII	GATC	2 cut(s)	225, 448
Eam1104I	CTCTTC	2 cut(s)	202, 647
EarI	CTCTTC	2 cut(s)	202, 647
Ecl136II	GAGCTC	1 cut(s)	7
Eco105I	TACGTA	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	81, 308
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	2 cut(s)	380, 449
FaiI	YATR	7 cut(s)	224, 232, 350, 378, 413, 447, 662
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	376, 445
Fnu4HI	GCNGC	5 cut(s)	88, 106, 109, 140, 680
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	5 cut(s)	88, 106, 109, 140, 680
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	5 cut(s)	88, 106, 109, 140, 680
HaeIII	GGCC	1 cut(s)	633
HgaI	GACGC	2 cut(s)	20, 290
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	380, 449
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	164, 366
HinfI	GANTC	3 cut(s)	125, 184, 335
HpaI	GTTAAC	1 cut(s)	394
HphI	GGTGA	2 cut(s)	352, 730
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	5 cut(s)	102, 183, 314, 322, 746
Hpy188III	TCNNGA	5 cut(s)	78, 305, 332, 386, 509
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	2 cut(s)	306, 772
HpyAV	CCTTC	5 cut(s)	151, 337, 484, 506, 515
HpyCH4III	ACNGT	3 cut(s)	693, 742, 772
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	139, 445, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 676
HpyF3I	CTNAG	4 cut(s)	94, 112, 426, 456
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	380, 449
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	225, 448
LmnI	GCTCC	6 cut(s)	4, 12, 102, 516, 658, 734
Lsp1109I	GCAGC	4 cut(s)	92, 99, 151, 691
LweI	GCATC	3 cut(s)	256, 409, 439
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	1 cut(s)	372
MalI	GATC	2 cut(s)	227, 450
MboI	GATC	2 cut(s)	225, 448
MboII	GAAGA	9 cut(s)	29, 179, 219, 230, 275, 425, 533, 634, 702
MfeI	CAATTG	1 cut(s)	52
MhlI	GDGCHC	3 cut(s)	9, 48, 505
MluCI	AATT	7 cut(s)	52, 66, 81, 308, 323, 672, 782
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	36, 650, 714
MseI	TTAA	3 cut(s)	69, 393, 698
MspA1I	CMGCKG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	500, 676
NdeII	GATC	2 cut(s)	225, 448
NlaIII	CATG	2 cut(s)	380, 449
NlaIV	GGNNCC	1 cut(s)	774
PfeI	GAWTC	2 cut(s)	125, 335
PkrI	GCNGC	5 cut(s)	89, 107, 110, 141, 681
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	2 cut(s)	244, 631
PstNI	CAGNNNCTG	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	69, 393, 698
SatI	GCNGC	5 cut(s)	88, 106, 109, 140, 680
Sau3AI	GATC	2 cut(s)	225, 448
Sau96I	GGNCC	2 cut(s)	244, 631
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	3 cut(s)	9, 48, 505
SfaNI	GCATC	3 cut(s)	256, 409, 439
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	244
SmlI	CTYRAG	3 cut(s)	167, 239, 330
SmoI	CTYRAG	3 cut(s)	167, 239, 330
SnaBI	TACGTA	1 cut(s)	373
Sse9I	AATT	7 cut(s)	52, 66, 81, 308, 323, 672, 782
SsiI	CCGC	3 cut(s)	10, 109, 247
SspI	AATATT	1 cut(s)	537
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	693, 742, 772
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	261, 273, 304
TasI	AATT	7 cut(s)	52, 66, 81, 308, 323, 672, 782
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	125, 335
Tru1I	TTAA	3 cut(s)	69, 393, 698
Tru9I	TTAA	3 cut(s)	69, 393, 698
TseI	GCWGC	4 cut(s)	87, 105, 139, 679
TspDTI	ATGAA	3 cut(s)	138, 231, 571
TspGWI	ACGGA	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	3 cut(s)	81, 308, 782
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.