Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004710

Physical Location & Seq

Genomic Coordinates Reverse (-)

25683770 .. 25685731

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGTCAACTCATTACGAAAGCAGCTTTACGAGTTCTGCTTGTCTGCGGCAGAGGAAACTGTAACATGTTCGTGAGTTCTGTTTCCTCCACCTCTGTTATGAAAAGTCCGTATGAGATAACGGCACCGATGCGAATTCATGACTGGTGCGGCGGTTTTGGCGATTTCAAGATCGGCTCTAAGCATGTGCAAGGAAATTTTAACTTGAGGTGGATGGGTATGAGTTCTGCATCGGCGATGGAGAAGAAAGATGAAAATTTGACGGTAAAGAAGGGTCAAAACGGCGGGGGGTCAGTAGCGGTTCCAAGTTATTGGGGAATAGAGACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATGCCATGGGAGACTTATCAAGCAAATCTGTCGATAGATTTGAAGAAGCACCACGTTCCGAAGAATATCGCCGACAAAGTCGCTTACCGGATTGTCAAGCTCCTCCGTATTCCCACCGATATATTTTTTCAGAGACGATATGGATGCAGAGCGATGATGCTAGAGACAGTAGCTGCAGTACCAGGAATGGTTGGAGGAATGCTTCTTCACCTAAAATCAATCCGAAAATTCGAACATAGCGGCGGTTGGATCAAAGCATTACTCGAAGAAGCAGAGAACGAGAGGATGCATCTAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTCTAGTGATGCTTGTTCAAGGAATATTCTTCAACTCTTTTTTCGTTTGTTACGTGATTTCCCCGCGGTTAGCTCATAGGGTCGTTGGATATTTAGAGGAAGAAGCTATACATTCTTACACCGAGTTTCTTAAAGATATCGACAATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTATTGATTATTGGAGATTGCCTAAAGATGCTACGTTGAAAGATGTTGTAACGGTGATTCGTGCTGATGAAGCTCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAAAAGAGTTGCGAGAAGCAGCAGCTCCGATTGGTTATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009060 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0010230 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

353

Amino Acids

40.09

Weight (kDa)

9.14

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	142 - 334	4.4e-84	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64210
fragaria_vesca	FvH4_4g05920 FvH4_4g05930
malus_domestica	MD13G1231500.v1.1 MD16G1236400.v1.1
prunus_persica	Prupe.1G061400_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061900_v2.0.a1 Prupe.1G061900_v2.0.a1
pyrus_communis	pycom16g19830
rosa_chinensis	RchiOBHm_Chr4g0397091 RchiOBHm_Chr4g0397111
rosa_laevigata	RLG00000009450
rosa_multiflora	Rmu_sc0002312.1_g000026 Rmu_sc0002312.1_g000031 Rmu_sc0007785.1_g000028 Rmu_sc0007785.1_g000034
rosa_roxburghii	Rroxscaffold_5G00342060 Rroxscaffold_5G00342080
rosa_rugosa	Rorug03G0344700 Rorug03G0344800
rosa_samantha	Rh4AG077300 Rh4BG072900 Rh4CG082500 Rh4DG070400 Rh4DG070500
rosa_wichuraiana	Rw0G015790 Rw0G015800 Rw4G006240 Rw4G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccII	CGCG	3 cut(s)	784, 887, 893
AclWI	GGATC	2 cut(s)	364, 638
AcsI	RAATTY	4 cut(s)	135, 196, 256, 608
AfaI	GTAC	2 cut(s)	561, 710
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	5 cut(s)	169, 424, 737, 751, 937
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	7 cut(s)	26, 481, 554, 791, 824, 971, 1043
AluI	AGCT	7 cut(s)	26, 481, 554, 791, 824, 971, 1043
Alw26I	GTCTC	4 cut(s)	317, 386, 508, 539
AlwI	GGATC	2 cut(s)	364, 638
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	4 cut(s)	23, 554, 1037, 1040
ApoI	RAATTY	4 cut(s)	135, 196, 256, 608
AspLEI	GCGC	1 cut(s)	889
AsuHPI	GGTGA	2 cut(s)	581, 964
AsuII	TTCGAA	1 cut(s)	612
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BanI	GGYRCC	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	810, 842
BbsI	GAAGAC	1 cut(s)	710
BbvI	GCAGC	4 cut(s)	35, 541, 1049, 1052
BccI	CCATC	4 cut(s)	208, 232, 347, 679
BceAI	ACGGC	2 cut(s)	138, 298
BcgI	CGANNNNNNTGC	6 cut(s)	393, 427, 507, 541, 863, 897
BciT130I	CCWGG	1 cut(s)	564
BcoDI	GTCTC	4 cut(s)	317, 386, 508, 539
BfaI	CTAG	2 cut(s)	542, 722
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	8 cut(s)	24, 49, 151, 555, 622, 885, 1038, 1041
BlsI	GCNGC	8 cut(s)	25, 50, 152, 556, 623, 886, 1039, 1042
Bme1390I	CCNGG	1 cut(s)	564
BmiI	GGNNCC	2 cut(s)	126, 303
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	8 cut(s)	120, 239, 515, 528, 657, 679, 717, 916
BpiI	GAAGAC	1 cut(s)	710
Bpu14I	TTCGAA	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	772
BsaJI	CCNNGG	3 cut(s)	368, 386, 782
BsaWI	WCCGGW	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	368, 386, 782
BseGI	GGATG	3 cut(s)	219, 530, 672
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	4 cut(s)	35, 541, 1049, 1052
Bsh1236I	CGCG	3 cut(s)	784, 887, 893
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	469
BsmAI	GTCTC	4 cut(s)	317, 386, 508, 539
BsmBI	CGTCTC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	367
Bsp119I	TTCGAA	1 cut(s)	612
Bsp143I	GATC	4 cut(s)	171, 356, 630, 870
Bsp19I	CCATGG	1 cut(s)	386
BspANI	GGCC	1 cut(s)	367
BspFNI	CGCG	3 cut(s)	784, 887, 893
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	126, 303
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	2 cut(s)	364, 638
BspT104I	TTCGAA	1 cut(s)	612
BspT107I	GGYRCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	368, 386, 782
BssMI	GATC	4 cut(s)	171, 356, 630, 870
BssT1I	CCWWGG	2 cut(s)	368, 386
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	5 cut(s)	62, 265, 377, 550, 952
BstBAI	YACGTR	1 cut(s)	772
BstBI	TTCGAA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	2 cut(s)	386, 782
BstF5I	GGATG	3 cut(s)	219, 530, 672
BstFNI	CGCG	3 cut(s)	784, 887, 893
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	4 cut(s)	174, 359, 633, 873
BstMAI	GTCTC	4 cut(s)	317, 386, 508, 539
BstMBI	GATC	4 cut(s)	171, 356, 630, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 890, 968
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	2 cut(s)	70, 188
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	3 cut(s)	784, 887, 893
BstV1I	GCAGC	4 cut(s)	35, 541, 1049, 1052
BstV2I	GAAGAC	1 cut(s)	710
BstXI	CCANNNNNNTGG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	2 cut(s)	386, 782
BtgZI	GCGATG	2 cut(s)	251, 548
BtsCI	GGATG	3 cut(s)	219, 530, 672
Cac8I	GCNNGC	1 cut(s)	891
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	889
Cfr42I	CCGCGG	1 cut(s)	785
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	2 cut(s)	560, 709
CviAII	CATG	4 cut(s)	67, 140, 185, 387
CviJI	RGCY	9 cut(s)	26, 177, 367, 481, 554, 791, 824, 971, 1043
CviKI_1	RGCY	9 cut(s)	26, 177, 367, 481, 554, 791, 824, 971, 1043
CviQI	GTAC	2 cut(s)	560, 709
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	4 cut(s)	173, 358, 632, 872
DpnII	GATC	4 cut(s)	171, 356, 630, 870
Eco130I	CCWWGG	2 cut(s)	368, 386
Eco32I	GATATC	1 cut(s)	856
EcoRI	GAATTC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	562
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	368, 386
EcoT22I	ATGCAT	1 cut(s)	672
ErhI	CCWWGG	2 cut(s)	368, 386
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	4 cut(s)	70, 143, 188, 390
FatI	CATG	4 cut(s)	66, 139, 184, 386
FauI	CCCGC	3 cut(s)	278, 789, 898
Fnu4HI	GCNGC	8 cut(s)	24, 49, 151, 555, 622, 885, 1038, 1041
FokI	GGATG	3 cut(s)	226, 537, 679
Fsp4HI	GCNGC	8 cut(s)	24, 49, 151, 555, 622, 885, 1038, 1041
FspBI	CTAG	2 cut(s)	542, 722
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	8 cut(s)	24, 49, 151, 555, 622, 885, 1038, 1041
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	4 cut(s)	70, 143, 188, 390
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	2 cut(s)	8, 988
HindII	GTYRAC	2 cut(s)	8, 988
HinfI	GANTC	2 cut(s)	4, 955
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	2 cut(s)	581, 964
Hpy166II	GTNNAC	2 cut(s)	8, 988
Hpy188I	TCNGA	7 cut(s)	348, 361, 441, 513, 605, 1003, 1047
Hpy188III	TCNNGA	5 cut(s)	73, 140, 169, 874, 980
Hpy8I	GTNNAC	2 cut(s)	8, 988
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	5 cut(s)	62, 265, 377, 550, 952
HpyCH4IV	ACGT	3 cut(s)	435, 771, 932
HpyCH4V	TGCA	5 cut(s)	190, 230, 528, 557, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 890, 968
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	3 cut(s)	435, 771, 932
Hsp92II	CATG	4 cut(s)	70, 143, 188, 390
HspAI	GCGC	1 cut(s)	887
KspI	CCGCGG	1 cut(s)	785
Kzo9I	GATC	4 cut(s)	171, 356, 630, 870
LmnI	GCTCC	2 cut(s)	486, 1048
LpnPI	CCDG	4 cut(s)	130, 482, 549, 576
Lsp1109I	GCAGC	4 cut(s)	35, 541, 1049, 1052
LweI	GCATC	8 cut(s)	120, 239, 515, 528, 657, 679, 717, 916
MaeI	CTAG	2 cut(s)	542, 722
MaeII	ACGT	3 cut(s)	435, 771, 932
MaeIII	GTNAC	3 cut(s)	62, 767, 946
MalI	GATC	4 cut(s)	173, 358, 632, 872
MboI	GATC	4 cut(s)	171, 356, 630, 870
MboII	GAAGA	9 cut(s)	256, 436, 454, 578, 659, 710, 739, 830, 880
MluCI	AATT	5 cut(s)	135, 196, 256, 339, 608
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	3 cut(s)	553, 608, 784
MnlI	CCTC	8 cut(s)	47, 97, 103, 201, 494, 569, 657, 808
Mph1103I	ATGCAT	1 cut(s)	672
MseI	TTAA	2 cut(s)	201, 849
MslI	CAYNNNNRTG	2 cut(s)	71, 981
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	3 cut(s)	784, 887, 893
MwoI	GCNNNNNNNGC	3 cut(s)	159, 890, 968
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	4 cut(s)	171, 356, 630, 870
NlaIII	CATG	4 cut(s)	70, 143, 188, 390
NlaIV	GGNNCC	2 cut(s)	126, 303
NsiI	ATGCAT	1 cut(s)	672
NspI	RCATGY	2 cut(s)	70, 188
NspV	TTCGAA	1 cut(s)	612
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	768
PctI	GAATGC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	955
PflFI	GACNNNGTC	1 cut(s)	458
PkrI	GCNGC	8 cut(s)	25, 50, 152, 556, 623, 886, 1039, 1042
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	772
PscI	ACATGT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	2 cut(s)	126, 303
PstI	CTGCAG	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	2 cut(s)	561, 710
RsaNI	GTAC	2 cut(s)	560, 709
RseI	CAYNNNNRTG	2 cut(s)	71, 981
SacII	CCGCGG	1 cut(s)	785
SaqAI	TTAA	2 cut(s)	201, 849
SatI	GCNGC	8 cut(s)	24, 49, 151, 555, 622, 885, 1038, 1041
Sau3AI	GATC	4 cut(s)	171, 356, 630, 870
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	564
SfaNI	GCATC	8 cut(s)	120, 239, 515, 528, 657, 679, 717, 916
SfcI	CTRYAG	1 cut(s)	555
Sfr303I	CCGCGG	1 cut(s)	785
SfuI	TTCGAA	1 cut(s)	612
SgrBI	CCGCGG	1 cut(s)	785
SmiMI	CAYNNNNRTG	2 cut(s)	71, 981
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	5 cut(s)	135, 196, 256, 339, 608
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	2 cut(s)	542, 722
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	2 cut(s)	368, 386
TaaI	ACNGT	5 cut(s)	62, 265, 377, 550, 952
TaiI	ACGT	3 cut(s)	438, 774, 935
TaqI	TCGA	6 cut(s)	413, 612, 645, 858, 873, 979
TasI	AATT	5 cut(s)	135, 196, 256, 339, 608
TauI	GCSGC	4 cut(s)	51, 153, 624, 887
TfiI	GAWTC	1 cut(s)	955
Tru1I	TTAA	2 cut(s)	201, 849
Tru9I	TTAA	2 cut(s)	201, 849
TseI	GCWGC	4 cut(s)	23, 554, 1037, 1040
TspDTI	ATGAA	5 cut(s)	116, 128, 267, 350, 981
TspGWI	ACGGA	2 cut(s)	99, 476
Tth111I	GACNNNGTC	1 cut(s)	458
XapI	RAATTY	4 cut(s)	135, 196, 256, 608
XceI	RCATGY	2 cut(s)	70, 188
XspI	CTAG	2 cut(s)	542, 722
Zsp2I	ATGCAT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.