Rh4DG070500

Belongs to the alternative oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004710
Physical Location & Seq
Reverse (-)
10457027 .. 10458962
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG070500.1

Sequence Viewer

Length: 1005 bp
ATGAACCGGGTTGCGTTGAGGTCCGTGATCGGAGGTCTGCGCAGTGGCGGGAGCTGGAACCGGTACATTTCCACGGCGGCTGTTGCTCGGAATGTTGAGAGAGCGGAGTTTCTGAAGCCGCAAAACGATGGCGTTCTTGGGGCGTTTCAGTGGAGGAGGATGATGAGCACGGGATCGGCTTCTGCTCAAACGTCGGAGGAGAAAGACCAGAAGGAGAGTGGAGTGAATAAAGTGGATGATAGCATGGTGGTTTCGAATTACTGGGGGATTACAACACCCAAGATTACTAGGGAGGATGGGACTGAGTGGCCATGGAATTGCTTTAGGCCATGGGAGAGTTATCAAGCGGACACCTCCATCGATCTGAGCAAGCACCATGTGCCCAAGACGTTTCAGGACAAAATTGCGTTCAGGACTGTCAAGTTTCTTCGAGTTCTATCTGATATTTACTTCAAGGAGCGGCATGGATGCCACGCAATGATGTTGGAAACTGTCGCAGCTGTCCCTGGCATGGTGGGAGGAATGGTGCTACACTTAAGATCTCTCCGCAAGTTTGAGCACAGTGGTGGTTGGATCAAAGCTTTACTTGAAGAAGCAGAGAATGAGAGGATGCACCTAATGACAGTAGCGGAACTTGTGAAGCCCGTGTGGCACGAGAGGCTACTGGTTCTGGCTGCGCAGGGGGTCTTCTTCAATACCTTCTTTGTGCTCTATTTGCTTTCCCCCAAAGTGGCTCATAGGGTTACTGGGTATCTGGAGGAGGAAGCTGTAATCTCTTACACAGACTATTTGAAGGCTATCGAAAATGGCAACATTGAAAATGTGCCGGCTCCTGCAATAGCCATTGACTACTGGAGGCTACCTAAAGATGCAACACTTCATGATGTTATTACTGTGATTCGTGCTGATGAAGCTCACCATCGGGATGTCAACCATTTTGCATCTGATATTCAATTTCAGGGAAAAGAATTGAGCGAAGCACCGGCGCCCATTGGTTATCACTGA

Protein Analysis

334

Amino Acids

37.87

Weight (kDa)

6.54

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AOX PF01786 124 - 315 2.8e-82 Alternative oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 41, 678
AccB1I GGYRCC 1 cut(s) 985
AccBSI CCGCTC 2 cut(s) 104, 460
AciI CCGC 8 cut(s) 48, 77, 104, 119, 347, 460, 547, 629
AclWI GGATC 2 cut(s) 181, 581
AcoI YGGCCR 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 986
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 511, 730
AflII CTTAAG 1 cut(s) 535
AgeI ACCGGT 1 cut(s) 60
AgsI TTSAA 6 cut(s) 454, 590, 694, 793, 818, 953
AjnI CCWGG 1 cut(s) 505
AleI CACNNNNGTG 1 cut(s) 564
AluBI AGCT 5 cut(s) 54, 500, 581, 767, 914
AluI AGCT 5 cut(s) 54, 500, 581, 767, 914
Alw21I GWGCWC 3 cut(s) 170, 561, 711
AlwI GGATC 2 cut(s) 181, 581
AoxI GGCC 2 cut(s) 308, 326
ApeKI GCWGC 2 cut(s) 497, 674
AsiGI ACCGGT 1 cut(s) 60
AspLEI GCGC 3 cut(s) 42, 679, 988
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 908
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 985
BauI CACGAG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 679
Bbv12I GWGCWC 3 cut(s) 170, 561, 711
BbvI GCAGC 2 cut(s) 509, 661
BccI CCATC 4 cut(s) 122, 290, 365, 927
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 507
BcnI CCSGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 989
BfrI CTTAAG 1 cut(s) 535
BglI GCCNNNNNGGC 1 cut(s) 649
BglII AGATCT 1 cut(s) 539
BisI GCNGC 5 cut(s) 78, 119, 461, 498, 675
BlsI GCNGC 5 cut(s) 79, 120, 462, 499, 676
Bme1390I CCNGG 2 cut(s) 8, 507
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 3 cut(s) 59, 831, 987
BmrFI CCNGG 2 cut(s) 8, 507
BmrI ACTGGG 2 cut(s) 271, 756
BmsI GCATC 4 cut(s) 458, 600, 859, 950
BmuI ACTGGG 2 cut(s) 271, 756
BpiI GAAGAC 1 cut(s) 679
BpmI CTGGAG 2 cut(s) 776, 874
Bpu14I TTCGAA 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 986
BsaJI CCNNGG 4 cut(s) 72, 311, 329, 505
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 511, 730
Bse118I RCCGGY 3 cut(s) 60, 826, 982
Bse1I ACTGG 4 cut(s) 266, 669, 751, 857
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 1 cut(s) 507
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 72, 311, 329, 505
BseGI GGATG 6 cut(s) 165, 241, 301, 473, 615, 931
BseLI CCNNNNNNNGG 2 cut(s) 511, 730
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 294, 356
BseNI ACTGG 4 cut(s) 266, 669, 751, 857
BseRI GAGGAG 3 cut(s) 169, 212, 773
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 2 cut(s) 509, 661
BshFI GGCC 2 cut(s) 310, 328
BshNI GGYRCC 1 cut(s) 985
BshTI ACCGGT 1 cut(s) 60
BshVI ATCGAT 1 cut(s) 360
BsiHKAI GWGCWC 3 cut(s) 170, 561, 711
BsiSI CCGG 4 cut(s) 7, 61, 827, 983
BslFI GGGAC 2 cut(s) 313, 488
BslI CCNNNNNNNGG 2 cut(s) 511, 730
BsmFI GGGAC 2 cut(s) 313, 488
BsnI GGCC 2 cut(s) 310, 328
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 4 cut(s) 170, 384, 561, 711
Bsp143I GATC 5 cut(s) 27, 173, 361, 539, 573
Bsp19I CCATGG 2 cut(s) 311, 329
BspACI CCGC 8 cut(s) 48, 77, 104, 119, 347, 460, 547, 629
BspANI GGCC 2 cut(s) 310, 328
BspCNI CTCAG 2 cut(s) 295, 357
BspDI ATCGAT 1 cut(s) 360
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 3 cut(s) 59, 831, 987
BspPI GGATC 2 cut(s) 181, 581
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 985
BspTI CTTAAG 1 cut(s) 535
BsrBI CCGCTC 2 cut(s) 104, 460
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 3 cut(s) 60, 826, 982
BsrI ACTGG 4 cut(s) 266, 669, 751, 857
BssAI RCCGGY 3 cut(s) 60, 826, 982
BssECI CCNNGG 4 cut(s) 72, 311, 329, 505
BssMI GATC 5 cut(s) 27, 173, 361, 539, 573
BssNI GRCGYC 1 cut(s) 986
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 2 cut(s) 311, 329
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 5 cut(s) 418, 493, 563, 625, 895
BstACI GRCGYC 1 cut(s) 986
BstAFI CTTAAG 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 371, 828
BstDEI CTNAG 2 cut(s) 303, 365
BstDSI CCRYGG 3 cut(s) 72, 311, 329
BstF5I GGATG 6 cut(s) 165, 241, 301, 473, 615, 931
BstH2I RGCGCY 1 cut(s) 989
BstHHI GCGC 3 cut(s) 42, 679, 988
BstKTI GATC 5 cut(s) 30, 176, 364, 542, 576
BstMBI GATC 5 cut(s) 27, 173, 361, 539, 573
BstMWI GCNNNNNNNGC 6 cut(s) 83, 379, 649, 658, 715, 911
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 2 cut(s) 6, 505
BstSLI GKGCMC 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 509, 661
BstV2I GAAGAC 1 cut(s) 679
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 2 cut(s) 310, 328
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 3 cut(s) 72, 311, 329
BtsCI GGATG 6 cut(s) 165, 241, 301, 473, 615, 931
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 4 cut(s) 49, 155, 568, 1000
Cac8I GCNNGC 2 cut(s) 371, 828
CciI TCATGA 1 cut(s) 880
CfoI GCGC 3 cut(s) 42, 679, 988
Cfr10I RCCGGY 3 cut(s) 60, 826, 982
Cfr13I GGNCC 1 cut(s) 21
ClaI ATCGAT 1 cut(s) 360
Csp6I GTAC 1 cut(s) 64
CspAI ACCGGT 1 cut(s) 60
CviAII CATG 7 cut(s) 244, 312, 330, 377, 464, 511, 881
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 303, 365
DinI GGCGCC 1 cut(s) 987
DpnI GATC 5 cut(s) 29, 175, 363, 541, 575
DpnII GATC 5 cut(s) 27, 173, 361, 539, 573
DraIII CACNNNGTG 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 311, 329
Eco47I GGWCC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 311, 329
EgeI GGCGCC 1 cut(s) 987
EheI GGCGCC 1 cut(s) 987
ErhI CCWWGG 2 cut(s) 311, 329
FaeI CATG 7 cut(s) 247, 315, 333, 380, 467, 514, 884
FaiI YATR 8 cut(s) 245, 313, 331, 378, 465, 512, 738, 882
FalI AAGNNNNNCTT 2 cut(s) 570, 602
FaqI GGGAC 2 cut(s) 313, 488
FatI CATG 7 cut(s) 243, 311, 329, 376, 463, 510, 880
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 5 cut(s) 78, 119, 461, 498, 675
FokI GGATG 6 cut(s) 172, 248, 308, 480, 622, 938
Fsp4HI GCNGC 5 cut(s) 78, 119, 461, 498, 675
FspBI CTAG 1 cut(s) 288
FspI TGCGCA 2 cut(s) 41, 678
GlaI GCGC 3 cut(s) 41, 678, 987
GluI GCNGC 5 cut(s) 78, 119, 461, 498, 675
GsuI CTGGAG 2 cut(s) 776, 874
HaeII RGCGCY 1 cut(s) 989
HaeIII GGCC 2 cut(s) 310, 328
HapII CCGG 4 cut(s) 7, 61, 827, 983
HhaI GCGC 3 cut(s) 42, 679, 988
Hin1I GRCGYC 1 cut(s) 986
Hin1II CATG 7 cut(s) 247, 315, 333, 380, 467, 514, 884
Hin6I GCGC 3 cut(s) 40, 677, 986
HinP1I GCGC 3 cut(s) 40, 677, 986
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 1 cut(s) 898
HpaII CCGG 4 cut(s) 7, 61, 827, 983
HphI GGTGA 1 cut(s) 908
Hpy166II GTNNAC 1 cut(s) 931
Hpy188I TCNGA 7 cut(s) 32, 90, 114, 196, 366, 442, 946
Hpy188III TCNNGA 5 cut(s) 395, 412, 755, 881, 923
Hpy8I GTNNAC 1 cut(s) 931
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 3 cut(s) 205, 709, 787
HpyCH4III ACNGT 5 cut(s) 418, 493, 563, 625, 895
HpyCH4IV ACGT 2 cut(s) 191, 389
HpyCH4V TGCA 4 cut(s) 613, 836, 872, 941
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 379, 649, 658, 715, 911
HpyF3I CTNAG 2 cut(s) 303, 365
HpySE526I ACGT 2 cut(s) 191, 389
Hsp92I GRCGYC 1 cut(s) 986
Hsp92II CATG 7 cut(s) 247, 315, 333, 380, 467, 514, 884
HspAI GCGC 3 cut(s) 40, 677, 986
KasI GGCGCC 1 cut(s) 985
KroI GCCGGC 1 cut(s) 826
KroNI GCCGGC 1 cut(s) 828
Kzo9I GATC 5 cut(s) 27, 173, 361, 539, 573
LmnI GCTCC 3 cut(s) 51, 457, 835
Lsp1109I GCAGC 2 cut(s) 509, 661
LweI GCATC 4 cut(s) 458, 600, 859, 950
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 191, 389
MaeIII GTNAC 1 cut(s) 742
MalI GATC 5 cut(s) 29, 175, 363, 541, 575
MbiI CCGCTC 2 cut(s) 104, 460
MboI GATC 5 cut(s) 27, 173, 361, 539, 573
MboII GAAGA 4 cut(s) 419, 602, 679, 682
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 4 cut(s) 170, 384, 561, 711
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 5 cut(s) 256, 316, 402, 953, 968
MluNI TGGCCA 1 cut(s) 310
Mly113I GGCGCC 1 cut(s) 986
MmeI TCCRAC 3 cut(s) 174, 465, 551
Mox20I TGGCCA 1 cut(s) 310
MroNI GCCGGC 1 cut(s) 826
MscI TGGCCA 1 cut(s) 310
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 2 cut(s) 564, 924
Msp20I TGGCCA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 4 cut(s) 7, 61, 827, 983
MspR9I CCNGG 2 cut(s) 8, 507
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 6 cut(s) 83, 379, 649, 658, 715, 911
NaeI GCCGGC 1 cut(s) 828
NarI GGCGCC 1 cut(s) 986
NciI CCSGG 1 cut(s) 8
NcoI CCATGG 2 cut(s) 311, 329
NdeII GATC 5 cut(s) 27, 173, 361, 539, 573
NgoMIV GCCGGC 1 cut(s) 826
NlaIII CATG 7 cut(s) 247, 315, 333, 380, 467, 514, 884
NlaIV GGNNCC 3 cut(s) 59, 831, 987
NsbI TGCGCA 2 cut(s) 41, 678
NspV TTCGAA 1 cut(s) 254
OliI CACNNNNGTG 1 cut(s) 564
PagI TCATGA 1 cut(s) 880
PdiI GCCGGC 1 cut(s) 828
PfeI GAWTC 1 cut(s) 898
PinAI ACCGGT 1 cut(s) 60
PkrI GCNGC 5 cut(s) 79, 120, 462, 499, 676
PluTI GGCGCC 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 3 cut(s) 59, 831, 987
PspPI GGNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 564, 924
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 5 cut(s) 78, 119, 461, 498, 675
Sau3AI GATC 5 cut(s) 27, 173, 361, 539, 573
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 8, 507
SduI GDGCHC 4 cut(s) 170, 384, 561, 711
SfaNI GCATC 4 cut(s) 458, 600, 859, 950
SfoI GGCGCC 1 cut(s) 987
SfuI TTCGAA 1 cut(s) 254
SgrAI CRCCGGYG 1 cut(s) 982
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 564, 924
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 5 cut(s) 256, 316, 402, 953, 968
SsiI CCGC 8 cut(s) 48, 77, 104, 119, 347, 460, 547, 629
SspDI GGCGCC 1 cut(s) 985
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 6, 505
StyI CCWWGG 2 cut(s) 311, 329
TaaI ACNGT 5 cut(s) 418, 493, 563, 625, 895
TaiI ACGT 2 cut(s) 194, 392
TaqI TCGA 4 cut(s) 254, 360, 430, 801
TasI AATT 5 cut(s) 256, 316, 402, 953, 968
TauI GCSGC 3 cut(s) 80, 121, 463
TfiI GAWTC 1 cut(s) 898
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 3 cut(s) 49, 155, 568
TseI GCWGC 2 cut(s) 497, 674
TspDTI ATGAA 3 cut(s) 17, 869, 924
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 3 cut(s) 49, 155, 568
Vha464I CTTAAG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.