Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004710

Physical Location & Seq

Genomic Coordinates Reverse (-)

10827937 .. 10830185

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAACCGGGTTGCGTTGAAGTCCGTGATCGGAGGCCTGCGCAGTGGTAGGAGCTGGAACCGGTACATTTCCACGGCCGCTGCTGCTAGGAATGTTGAGAGAGCGGAGTTTCTGAAGCCGCAAAACGATGGCGTTCTTGGGGCGTTTCAGTGGAGGAGGATGATGAGCACGGGATCGGTTTCTGCTCAAACGTCGGAGAAGAAAGACCAGAAGGAGAGTGGAGTGAAGAAAATGGACGATAGTATGGTGGTTTCGAATTACTGGGGGATTACGACGCCCAAGATTACTAGGGAGGATGGGACTGAGTGGCCATGGAATTGCTTTAGGCCATGGGAGAGTTACCAAGCGGACACCTCCATCGATCTGAGCAAGCACCATCTGCCCAAGACATTTCAGGACAAAATTGCGTTCAGGACTGTCAAGTTTCTTCGAGTTCTATCTGATCTTTACTTCAAGGAGCGGCATGGATGCCACGCAATGATGTTGGAAACTATCGCAGCTGTCCCTGGCATGGTGGGAGGAATGGTGCTACACTTAAGATCTCTCCGCAAGTTTGAGCACAGTGGTGGTTGGATCAAAGCTTTACTTGAAGAAGCAGAGAATGAGAGGATGCACCTTATGACAGTAGTGGAACTTGTGAAGCCCGTGTGGCACGAGAGGCTACTGGTTCTGGCTGCGCAGGGGGTCTTCTTCAATGCCTTCTTTGTGCTCTATTTGCTTTCCCCCAAAGTGGCTCATAGGGTTACTGGGTATCTGGAGGAGGAAGCTGTAATCTCTTACACAGACTATTTGAAGGCTATCGAAAATGGCAAAATTGAAAATGTGCCGGCTCCTGCAATAGCCATTGACTACTGGAGGCTACCTAAAGATGCAACACTTCATGATGTTATTACTGTGATTCGTGCCGATGAAGCTCACCATAGGGATGTCAACCATTTTGCATCTGATATTCAATTTCAGGGAAAAGAATTGAGAGAAGCACCGGCGCCCATTGGTTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009060 GO:0009916 GO:0009987 GO:0010230 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

334

Amino Acids

38.1

Weight (kDa)

8.67

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AOX	PF01786	124 - 315	1.3e-82	Alternative oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64210
fragaria_vesca	FvH4_4g05920 FvH4_4g05930
malus_domestica	MD13G1231500.v1.1 MD16G1236400.v1.1
prunus_persica	Prupe.1G061400_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061900_v2.0.a1 Prupe.1G061900_v2.0.a1
pyrus_communis	pycom16g19830
rosa_chinensis	RchiOBHm_Chr4g0397091 RchiOBHm_Chr4g0397111
rosa_laevigata	RLG00000009450
rosa_multiflora	Rmu_sc0002312.1_g000026 Rmu_sc0002312.1_g000031 Rmu_sc0007785.1_g000028 Rmu_sc0007785.1_g000034
rosa_roxburghii	Rroxscaffold_5G00342060 Rroxscaffold_5G00342080
rosa_rugosa	Rorug03G0344700 Rorug03G0344800
rosa_samantha	Rh4AG077300 Rh4BG072900 Rh4CG082500 Rh4DG070400 Rh4DG070500
rosa_wichuraiana	Rw0G015790 Rw0G015800 Rw4G006240 Rw4G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	41, 678
AccB1I	GGYRCC	1 cut(s)	985
AccBSI	CCGCTC	2 cut(s)	104, 460
AciI	CCGC	6 cut(s)	78, 104, 119, 347, 460, 547
AclWI	GGATC	2 cut(s)	181, 581
AcoI	YGGCCR	2 cut(s)	75, 308
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	2 cut(s)	275, 986
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	511, 730
AflII	CTTAAG	1 cut(s)	535
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	7 cut(s)	19, 454, 590, 694, 793, 818, 953
AjnI	CCWGG	1 cut(s)	505
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	5 cut(s)	54, 500, 581, 767, 914
AluI	AGCT	5 cut(s)	54, 500, 581, 767, 914
Alw21I	GWGCWC	3 cut(s)	170, 561, 711
AlwI	GGATC	2 cut(s)	181, 581
AoxI	GGCC	4 cut(s)	34, 75, 308, 326
ApeKI	GCWGC	4 cut(s)	80, 83, 497, 674
AsiGI	ACCGGT	1 cut(s)	60
AspLEI	GCGC	3 cut(s)	42, 679, 988
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	908
AsuII	TTCGAA	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	985
BauI	CACGAG	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	679
Bbv12I	GWGCWC	3 cut(s)	170, 561, 711
BbvI	GCAGC	4 cut(s)	67, 70, 509, 661
BccI	CCATC	4 cut(s)	122, 290, 365, 384
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	2 cut(s)	87, 288
BfoI	RGCGCY	1 cut(s)	989
BfrI	CTTAAG	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	7 cut(s)	78, 81, 84, 119, 461, 498, 675
BlsI	GCNGC	7 cut(s)	79, 82, 85, 120, 462, 499, 676
Bme1390I	CCNGG	2 cut(s)	8, 507
BmiI	GGNNCC	3 cut(s)	59, 831, 987
BmrFI	CCNGG	2 cut(s)	8, 507
BmrI	ACTGGG	2 cut(s)	271, 756
BmsI	GCATC	4 cut(s)	458, 600, 859, 950
BmuI	ACTGGG	2 cut(s)	271, 756
BpiI	GAAGAC	1 cut(s)	679
BpmI	CTGGAG	2 cut(s)	776, 874
Bpu14I	TTCGAA	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	360
BsaHI	GRCGYC	2 cut(s)	275, 986
BsaJI	CCNNGG	4 cut(s)	72, 311, 329, 505
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 730
Bse118I	RCCGGY	3 cut(s)	60, 826, 982
Bse1I	ACTGG	4 cut(s)	266, 669, 751, 857
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	72, 311, 329, 505
BseGI	GGATG	5 cut(s)	165, 301, 473, 615, 931
BseLI	CCNNNNNNNGG	2 cut(s)	511, 730
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	294, 356
BseNI	ACTGG	4 cut(s)	266, 669, 751, 857
BseRI	GAGGAG	2 cut(s)	169, 773
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	4 cut(s)	67, 70, 509, 661
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	36, 77, 310, 328
BshNI	GGYRCC	1 cut(s)	985
BshTI	ACCGGT	1 cut(s)	60
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	3 cut(s)	170, 561, 711
BsiSI	CCGG	4 cut(s)	7, 61, 827, 983
BslFI	GGGAC	2 cut(s)	313, 488
BslI	CCNNNNNNNGG	2 cut(s)	511, 730
BsmFI	GGGAC	2 cut(s)	313, 488
BsnI	GGCC	4 cut(s)	36, 77, 310, 328
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	170, 561, 711
Bsp143I	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
Bsp19I	CCATGG	2 cut(s)	311, 329
BspACI	CCGC	6 cut(s)	78, 104, 119, 347, 460, 547
BspANI	GGCC	4 cut(s)	36, 77, 310, 328
BspCNI	CTCAG	2 cut(s)	295, 357
BspDI	ATCGAT	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	880
BspLI	GGNNCC	3 cut(s)	59, 831, 987
BspPI	GGATC	2 cut(s)	181, 581
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	985
BspTI	CTTAAG	1 cut(s)	535
BsrBI	CCGCTC	2 cut(s)	104, 460
BsrDI	GCAATG	1 cut(s)	483
BsrFI	RCCGGY	3 cut(s)	60, 826, 982
BsrI	ACTGG	4 cut(s)	266, 669, 751, 857
BssAI	RCCGGY	3 cut(s)	60, 826, 982
BssECI	CCNNGG	4 cut(s)	72, 311, 329, 505
BssMI	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
BssNI	GRCGYC	2 cut(s)	275, 986
BssSI	CACGAG	1 cut(s)	653
BssT1I	CCWWGG	2 cut(s)	311, 329
Bst2BI	CACGAG	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	4 cut(s)	418, 563, 625, 895
BstACI	GRCGYC	2 cut(s)	275, 986
BstAFI	CTTAAG	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	38, 371, 828
BstDEI	CTNAG	2 cut(s)	303, 365
BstDSI	CCRYGG	3 cut(s)	72, 311, 329
BstF5I	GGATG	5 cut(s)	165, 301, 473, 615, 931
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	3 cut(s)	42, 679, 988
BstKTI	GATC	6 cut(s)	30, 176, 364, 445, 542, 576
BstMBI	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 379, 649, 658, 715, 911
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	6, 505
BstV1I	GCAGC	4 cut(s)	67, 70, 509, 661
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BstZI	CGGCCG	1 cut(s)	75
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	36, 77, 310, 328
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	3 cut(s)	72, 311, 329
BtsCI	GGATG	5 cut(s)	165, 301, 473, 615, 931
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	49, 155, 568
Cac8I	GCNNGC	3 cut(s)	38, 371, 828
CciI	TCATGA	1 cut(s)	880
CfoI	GCGC	3 cut(s)	42, 679, 988
Cfr10I	RCCGGY	3 cut(s)	60, 826, 982
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	64
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	5 cut(s)	312, 330, 464, 511, 881
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	303, 365
DinI	GGCGCC	1 cut(s)	987
DpnI	GATC	6 cut(s)	29, 175, 363, 444, 541, 575
DpnII	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
EaeI	YGGCCR	2 cut(s)	75, 308
EagI	CGGCCG	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	311, 329
Eco147I	AGGCCT	1 cut(s)	36
Eco52I	CGGCCG	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	2 cut(s)	311, 329
EgeI	GGCGCC	1 cut(s)	987
EheI	GGCGCC	1 cut(s)	987
ErhI	CCWWGG	2 cut(s)	311, 329
FaeI	CATG	5 cut(s)	315, 333, 467, 514, 884
FaiI	YATR	9 cut(s)	245, 313, 331, 465, 512, 620, 738, 882, 921
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	2 cut(s)	313, 488
FatI	CATG	5 cut(s)	311, 329, 463, 510, 880
Fnu4HI	GCNGC	7 cut(s)	78, 81, 84, 119, 461, 498, 675
FokI	GGATG	5 cut(s)	172, 308, 480, 622, 938
Fsp4HI	GCNGC	7 cut(s)	78, 81, 84, 119, 461, 498, 675
FspBI	CTAG	2 cut(s)	87, 288
FspI	TGCGCA	2 cut(s)	41, 678
GlaI	GCGC	3 cut(s)	41, 678, 987
GluI	GCNGC	7 cut(s)	78, 81, 84, 119, 461, 498, 675
GsuI	CTGGAG	2 cut(s)	776, 874
HaeII	RGCGCY	1 cut(s)	989
HaeIII	GGCC	4 cut(s)	36, 77, 310, 328
HapII	CCGG	4 cut(s)	7, 61, 827, 983
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	3 cut(s)	42, 679, 988
Hin1I	GRCGYC	2 cut(s)	275, 986
Hin1II	CATG	5 cut(s)	315, 333, 467, 514, 884
Hin6I	GCGC	3 cut(s)	40, 677, 986
HinP1I	GCGC	3 cut(s)	40, 677, 986
HincII	GTYRAC	1 cut(s)	931
HindII	GTYRAC	1 cut(s)	931
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	1 cut(s)	898
HpaII	CCGG	4 cut(s)	7, 61, 827, 983
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	1 cut(s)	931
Hpy188I	TCNGA	6 cut(s)	32, 114, 196, 366, 442, 946
Hpy188III	TCNNGA	4 cut(s)	395, 412, 755, 881
Hpy8I	GTNNAC	1 cut(s)	931
Hpy99I	CGWCG	2 cut(s)	196, 277
HpyAV	CCTTC	3 cut(s)	205, 709, 787
HpyCH4III	ACNGT	4 cut(s)	418, 563, 625, 895
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	613, 836, 872, 941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 379, 649, 658, 715, 911
HpyF3I	CTNAG	2 cut(s)	303, 365
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	2 cut(s)	275, 986
Hsp92II	CATG	5 cut(s)	315, 333, 467, 514, 884
HspAI	GCGC	3 cut(s)	40, 677, 986
KasI	GGCGCC	1 cut(s)	985
KroI	GCCGGC	1 cut(s)	826
KroNI	GCCGGC	1 cut(s)	828
Kzo9I	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
LmnI	GCTCC	3 cut(s)	51, 457, 835
Lsp1109I	GCAGC	4 cut(s)	67, 70, 509, 661
LweI	GCATC	4 cut(s)	458, 600, 859, 950
MaeI	CTAG	2 cut(s)	87, 288
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	2 cut(s)	338, 742
MalI	GATC	6 cut(s)	29, 175, 363, 444, 541, 575
MbiI	CCGCTC	2 cut(s)	104, 460
MboI	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
MboII	GAAGA	6 cut(s)	211, 238, 419, 602, 679, 682
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	3 cut(s)	170, 561, 711
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	6 cut(s)	256, 316, 402, 813, 953, 968
MluNI	TGGCCA	1 cut(s)	310
Mly113I	GGCGCC	1 cut(s)	986
MmeI	TCCRAC	3 cut(s)	174, 465, 551
Mox20I	TGGCCA	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	826
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	1 cut(s)	536
MslI	CAYNNNNRTG	2 cut(s)	564, 924
Msp20I	TGGCCA	1 cut(s)	310
MspA1I	CMGCKG	2 cut(s)	80, 500
MspCI	CTTAAG	1 cut(s)	535
MspI	CCGG	4 cut(s)	7, 61, 827, 983
MspR9I	CCNGG	2 cut(s)	8, 507
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	6 cut(s)	83, 379, 649, 658, 715, 911
NaeI	GCCGGC	1 cut(s)	828
NarI	GGCGCC	1 cut(s)	986
NciI	CCSGG	1 cut(s)	8
NcoI	CCATGG	2 cut(s)	311, 329
NdeII	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
NgoMIV	GCCGGC	1 cut(s)	826
NlaIII	CATG	5 cut(s)	315, 333, 467, 514, 884
NlaIV	GGNNCC	3 cut(s)	59, 831, 987
NsbI	TGCGCA	2 cut(s)	41, 678
NspV	TTCGAA	1 cut(s)	254
OliI	CACNNNNGTG	1 cut(s)	564
PagI	TCATGA	1 cut(s)	880
PceI	AGGCCT	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	898
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	7 cut(s)	79, 82, 85, 120, 462, 499, 676
PluTI	GGCGCC	1 cut(s)	989
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	59, 831, 987
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	2 cut(s)	564, 924
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	7 cut(s)	78, 81, 84, 119, 461, 498, 675
Sau3AI	GATC	6 cut(s)	27, 173, 361, 442, 539, 573
ScrFI	CCNGG	2 cut(s)	8, 507
SduI	GDGCHC	3 cut(s)	170, 561, 711
SetI	ASST	9 cut(s)	56, 194, 356, 502, 583, 618, 769, 865, 916
SfaNI	GCATC	4 cut(s)	458, 600, 859, 950
SfoI	GGCGCC	1 cut(s)	987
SfuI	TTCGAA	1 cut(s)	254
SgrAI	CRCCGGYG	1 cut(s)	982
SmiMI	CAYNNNNRTG	2 cut(s)	564, 924
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	6 cut(s)	256, 316, 402, 813, 953, 968
SseBI	AGGCCT	1 cut(s)	36
SsiI	CCGC	6 cut(s)	78, 104, 119, 347, 460, 547
SspDI	GGCGCC	1 cut(s)	985
SspMI	CTAG	2 cut(s)	87, 288
StuI	AGGCCT	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	6, 505
StyI	CCWWGG	2 cut(s)	311, 329
TaaI	ACNGT	4 cut(s)	418, 563, 625, 895
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	254, 360, 430, 801
TasI	AATT	6 cut(s)	256, 316, 402, 813, 953, 968
TauI	GCSGC	3 cut(s)	80, 121, 463
TfiI	GAWTC	1 cut(s)	898
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TscAI	CASTG	3 cut(s)	49, 155, 568
TseI	GCWGC	4 cut(s)	80, 83, 497, 674
TspDTI	ATGAA	3 cut(s)	17, 869, 924
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	3 cut(s)	49, 155, 568
Vha464I	CTTAAG	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	2 cut(s)	87, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.