Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004710

Physical Location & Seq

Genomic Coordinates Reverse (-)

4377565 .. 4381365

Gene Structure 3801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G061800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAACCGGATCGCGGTGAGGTCGGTTGTCGGTGGCCTGCTCGGTGGCCGCAACTGCAACCGCTACATTTCCACGGCGGTGGCCGTCAGGCCGTTGGACGGCGCCGAGTTTCTGAATCGCCGGAACGGTGACGTTTTGGGGTTTTACTGGAGGAGGATGATGAGCACGGTGCCGCAGTCTGCTGAAACGGCGTCGCTGGGGGAGAAGGAGCAGAAGGAGAGCCAGAGCTCGGTTTCCGACGACGCCAAGAAAGGAAGTGATAGCGTTGTCGTTTCGAATTACTGGGGGATTCAGAGGCCGAAGATCACAAGGGAGGACGGGAGTGAGTGGCCTTGGAATTGCTTCATGCCATGGGAGACTTATAAGTCAGACTTGTCGATTGATCTGAGCAAGCATCATGTGCCGAAGACGTTTCTGGACAGAGTTGCGTATAGGACCGTCAAGCTTCTTCGGATTCCAACTGATGTTTTCTTTCAGAGGCGGTATGGGTGCCGTGCAATGATGCTGGAAACTGTGGCAGCTGTACCTGGTATGGTGGGAGGAATGCTACTGCACTTAAGGTCTCTCCGCAAGTTCCAGCAGAGTGGTGGTTGGATTAAGGCTTTACTTGAAGAGGCAGAGAATGAGAGGATGCACCTCATGACGATGGTGGAACTTGTGAAGCCCGTGTGGTACGAGAGACTACTGGTTCTCGCTGTGCAGGGAGTGTTCTTCAATGCCTTCTTTGTTCTTTATGTGCTTTCCCCAAAACTGGCACATAGGGTTGTTGGGTATCTGGAGGAGGAGGCTATACACTCTTATACAGAGTATTTGAAGGATATCGATAGTGGCAAGATTGAAAATGTACCGGCTCCTGCAATTGCAATTGACTACTGGAGGCTTCCTAAGGATTCTACACTGAAGGATGTTATTACTGTGATTCGTGCCGATGAAGCTCATCATCGAGATGTCAACCATTTTGCATCGGTGAGTATTAAACACCTTTTCCATTATCATGCCTTTCATTGGTTTTTTACAATTTTGTCACTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

345

Amino Acids

39.5

Weight (kDa)

8.96

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64210
fragaria_vesca	FvH4_4g05920 FvH4_4g05930
malus_domestica	MD13G1231500.v1.1 MD16G1236400.v1.1
prunus_persica	Prupe.1G061400_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061900_v2.0.a1 Prupe.1G061900_v2.0.a1
pyrus_communis	pycom16g19830
rosa_chinensis	RchiOBHm_Chr4g0397091 RchiOBHm_Chr4g0397111
rosa_laevigata	RLG00000009450
rosa_multiflora	Rmu_sc0002312.1_g000026 Rmu_sc0002312.1_g000031 Rmu_sc0007785.1_g000028 Rmu_sc0007785.1_g000034
rosa_roxburghii	Rroxscaffold_5G00342060 Rroxscaffold_5G00342080
rosa_rugosa	Rorug03G0344700 Rorug03G0344800
rosa_samantha	Rh4AG077300 Rh4BG072900 Rh4CG082500 Rh4DG070400 Rh4DG070500
rosa_wichuraiana	Rw0G015790 Rw0G015800 Rw4G006240 Rw4G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AasI	GACNNNNNNGTC	1 cut(s)	364
AccB1I	GGYRCC	3 cut(s)	101, 169, 489
AccII	CGCG	1 cut(s)	14
AciI	CCGC	7 cut(s)	14, 49, 61, 77, 173, 481, 568
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	2 cut(s)	46, 81
AcuI	CTGAAG	1 cut(s)	920
AcyI	GRCGYC	3 cut(s)	102, 191, 243
AfaI	GTAC	3 cut(s)	525, 674, 846
AfiI	CCNNNNNNNGG	5 cut(s)	13, 98, 229, 751, 1005
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	611, 715, 814, 839
AjnI	CCWGG	1 cut(s)	526
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	4 cut(s)	228, 445, 521, 935
AluI	AGCT	4 cut(s)	228, 445, 521, 935
Alw21I	GWGCWC	2 cut(s)	167, 230
Alw26I	GTCTC	3 cut(s)	350, 567, 673
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	6 cut(s)	34, 46, 81, 89, 296, 329
ApeKI	GCWGC	1 cut(s)	518
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	28, 140, 979
AsuII	TTCGAA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	435
AxyI	CCTNAGG	1 cut(s)	885
BanI	GGYRCC	3 cut(s)	101, 169, 489
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	2 cut(s)	167, 230
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	1 cut(s)	640
BceAI	ACGGC	6 cut(s)	68, 76, 90, 115, 204, 477
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	3 cut(s)	350, 567, 673
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	556
BisI	GCNGC	3 cut(s)	49, 173, 519
BlsI	GCNGC	3 cut(s)	50, 174, 520
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	4 cut(s)	103, 171, 491, 852
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	4 cut(s)	403, 492, 621, 971
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	3 cut(s)	169, 797, 895
Bpu14I	TTCGAA	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	822
BsaHI	GRCGYC	3 cut(s)	102, 191, 243
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	72, 332, 350
BsaWI	WCCGGW	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 98, 229, 751, 1005
Bse118I	RCCGGY	1 cut(s)	847
Bse1I	ACTGG	5 cut(s)	152, 287, 690, 756, 878
Bse21I	CCTNAGG	1 cut(s)	885
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	822
BseDI	CCNNGG	3 cut(s)	72, 332, 350
BseGI	GGATG	3 cut(s)	162, 636, 910
BseLI	CCNNNNNNNGG	5 cut(s)	13, 98, 229, 751, 1005
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	377
BseNI	ACTGG	5 cut(s)	152, 287, 690, 756, 878
BseRI	GAGGAG	3 cut(s)	166, 794, 797
BseXI	GCAGC	1 cut(s)	530
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	2 cut(s)	536, 719
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	6 cut(s)	36, 48, 83, 91, 298, 331
BshNI	GGYRCC	3 cut(s)	101, 169, 489
BshVI	ATCGAT	1 cut(s)	822
BsiHKAI	GWGCWC	2 cut(s)	167, 230
BsiSI	CCGG	3 cut(s)	7, 121, 848
BslI	CCNNNNNNNGG	5 cut(s)	13, 98, 229, 751, 1005
BsmAI	GTCTC	3 cut(s)	350, 567, 673
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	6 cut(s)	36, 48, 83, 91, 298, 331
Bso31I	GGTCTC	1 cut(s)	567
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	167, 230
Bsp143I	GATC	3 cut(s)	9, 303, 382
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	7 cut(s)	14, 49, 61, 77, 173, 481, 568
BspANI	GGCC	6 cut(s)	36, 48, 83, 91, 298, 331
BspCNI	CTCAG	1 cut(s)	378
BspDI	ATCGAT	1 cut(s)	822
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	4 cut(s)	103, 171, 491, 852
BspPI	GGATC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	275
BspT107I	GGYRCC	3 cut(s)	101, 169, 489
BspTI	CTTAAG	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	847
BsrI	ACTGG	5 cut(s)	152, 287, 690, 756, 878
BssAI	RCCGGY	1 cut(s)	847
BssECI	CCNNGG	3 cut(s)	72, 332, 350
BssMI	GATC	3 cut(s)	9, 303, 382
BssNI	GRCGYC	3 cut(s)	102, 191, 243
BssT1I	CCWWGG	2 cut(s)	332, 350
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	5 cut(s)	128, 169, 439, 514, 916
Bst6I	CTCTTC	1 cut(s)	606
BstACI	GRCGYC	3 cut(s)	102, 191, 243
BstAFI	CTTAAG	1 cut(s)	556
BstAPI	GCANNNNNTGC	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	38, 392
BstDEI	CTNAG	2 cut(s)	386, 885
BstDSI	CCRYGG	2 cut(s)	72, 350
BstF5I	GGATG	3 cut(s)	162, 636, 910
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	12, 306, 385
BstMAI	GTCTC	3 cut(s)	350, 567, 673
BstMBI	GATC	3 cut(s)	9, 303, 382
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 188, 400, 932
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	530
BstV2I	GAAGAC	1 cut(s)	413
BstXI	CCANNNNNNTGG	2 cut(s)	79, 584
Bsu15I	ATCGAT	1 cut(s)	822
Bsu36I	CCTNAGG	1 cut(s)	885
BsuRI	GGCC	6 cut(s)	36, 48, 83, 91, 298, 331
BsuTUI	ATCGAT	1 cut(s)	822
BtgI	CCRYGG	2 cut(s)	72, 350
BtsCI	GGATG	3 cut(s)	162, 636, 910
BtsIMutI	CAGTG	1 cut(s)	896
Cac8I	GCNNGC	2 cut(s)	38, 392
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	435
ClaI	ATCGAT	1 cut(s)	822
CseI	GACGC	2 cut(s)	180, 251
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	524, 673, 845
CviAII	CATG	5 cut(s)	346, 351, 398, 640, 995
CviQI	GTAC	3 cut(s)	524, 673, 845
DdeI	CTNAG	2 cut(s)	386, 885
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	3 cut(s)	11, 305, 384
DpnII	GATC	3 cut(s)	9, 303, 382
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	2 cut(s)	46, 81
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	332, 350
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	920
Eco81I	CCTNAGG	1 cut(s)	885
EcoICRI	GAGCTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	332, 350
EcoT38I	GRGCYC	1 cut(s)	230
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
ErhI	CCWWGG	2 cut(s)	332, 350
FaeI	CATG	5 cut(s)	349, 354, 401, 643, 998
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	5 cut(s)	345, 350, 397, 639, 994
Fnu4HI	GCNGC	3 cut(s)	49, 173, 519
FokI	GGATG	3 cut(s)	169, 643, 917
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	49, 173, 519
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	49, 173, 519
GsaI	CCCAGC	1 cut(s)	200
GsuI	CTGGAG	3 cut(s)	169, 797, 895
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	6 cut(s)	36, 48, 83, 91, 298, 331
HapII	CCGG	3 cut(s)	7, 121, 848
HgaI	GACGC	2 cut(s)	180, 251
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	3 cut(s)	102, 191, 243
Hin1II	CATG	5 cut(s)	349, 354, 401, 643, 998
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	5 cut(s)	115, 289, 454, 890, 919
HpaII	CCGG	3 cut(s)	7, 121, 848
HphI	GGTGA	3 cut(s)	28, 140, 979
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	7 cut(s)	114, 238, 294, 370, 387, 453, 477
Hpy188III	TCNNGA	4 cut(s)	416, 640, 776, 944
Hpy8I	GTNNAC	1 cut(s)	952
Hpy99I	CGWCG	3 cut(s)	196, 242, 245
HpyAV	CCTTC	5 cut(s)	199, 208, 730, 808, 895
HpyCH4III	ACNGT	5 cut(s)	128, 169, 439, 514, 916
HpyCH4IV	ACGT	2 cut(s)	132, 410
HpyCH4V	TGCA	8 cut(s)	57, 497, 553, 634, 700, 857, 863, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 188, 400, 932
HpyF3I	CTNAG	2 cut(s)	386, 885
HpySE526I	ACGT	2 cut(s)	132, 410
Hsp92I	GRCGYC	3 cut(s)	102, 191, 243
Hsp92II	CATG	5 cut(s)	349, 354, 401, 643, 998
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	9, 303, 382
LmnI	GCTCC	2 cut(s)	208, 856
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	4 cut(s)	403, 492, 621, 971
MabI	ACCWGGT	1 cut(s)	526
MaeII	ACGT	2 cut(s)	132, 410
MaeIII	GTNAC	2 cut(s)	128, 1023
MalI	GATC	3 cut(s)	11, 305, 384
MboI	GATC	3 cut(s)	9, 303, 382
MboII	GAAGA	5 cut(s)	313, 418, 440, 623, 703
MfeI	CAATTG	2 cut(s)	858, 864
MhlI	GDGCHC	2 cut(s)	167, 230
MluCI	AATT	5 cut(s)	277, 337, 858, 864, 1017
Mly113I	GGCGCC	1 cut(s)	102
MmeI	TCCRAC	4 cut(s)	75, 261, 482, 572
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	3 cut(s)	557, 597, 975
MslI	CAYNNNNRTG	4 cut(s)	77, 644, 945, 993
MspA1I	CMGCKG	1 cut(s)	521
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	3 cut(s)	7, 121, 848
MspR9I	CCNGG	1 cut(s)	528
MunI	CAATTG	2 cut(s)	858, 864
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	54, 188, 400, 932
NarI	GGCGCC	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	350
NdeII	GATC	3 cut(s)	9, 303, 382
NlaIII	CATG	5 cut(s)	349, 354, 401, 643, 998
NlaIV	GGNNCC	4 cut(s)	103, 171, 491, 852
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	128, 1023
NspV	TTCGAA	1 cut(s)	275
OliI	CACNNNNGTG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	639
PctI	GAATGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	5 cut(s)	115, 289, 454, 890, 919
PkrI	GCNGC	3 cut(s)	50, 174, 520
PluTI	GGCGCC	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	4 cut(s)	103, 171, 491, 852
PspPI	GGNCC	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	525, 674, 846
RsaNI	GTAC	3 cut(s)	524, 673, 845
RseI	CAYNNNNRTG	4 cut(s)	77, 644, 945, 993
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	557, 597, 975
SatI	GCNGC	3 cut(s)	49, 173, 519
Sau3AI	GATC	3 cut(s)	9, 303, 382
Sau96I	GGNCC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	2 cut(s)	167, 230
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	4 cut(s)	403, 492, 621, 971
SfoI	GGCGCC	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	275
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	4 cut(s)	77, 644, 945, 993
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	5 cut(s)	277, 337, 858, 864, 1017
SsiI	CCGC	7 cut(s)	14, 49, 61, 77, 173, 481, 568
SspDI	GGCGCC	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	332, 350
TaaI	ACNGT	5 cut(s)	128, 169, 439, 514, 916
TaiI	ACGT	2 cut(s)	135, 413
TaqI	TCGA	4 cut(s)	275, 377, 822, 943
TasI	AATT	5 cut(s)	277, 337, 858, 864, 1017
TauI	GCSGC	2 cut(s)	51, 175
TfiI	GAWTC	5 cut(s)	115, 289, 454, 890, 919
Tru1I	TTAA	3 cut(s)	557, 597, 975
Tru9I	TTAA	3 cut(s)	557, 597, 975
TscAI	CASTG	1 cut(s)	903
TseFI	GTSAC	2 cut(s)	128, 1023
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	128, 1023
TspDTI	ATGAA	4 cut(s)	17, 334, 945, 992
TspRI	CASTG	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmnI	GAANNNNTTC	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.