Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004710

Physical Location & Seq

Genomic Coordinates Reverse (-)

41600579 .. 41601398

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0344700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTGATCAGCCACAACCACAAGGGAATCATCGTGGCACTTCTGAAAGCTGCCGTCGAAAGGCCACATCCGCAGCCACTGGAAAGCAGCAGCAGCAGCGAACAGAGGTAGATCATCATCTTCATCATCATCAATCCAGTAGTACTGCAGCTTCAGCTCCGTGTGGGGCATGCAAGTTTTTGAGAAGGAAGTGCATTAGTGGTTGCATCTTTGCTCCCCATTTTGGATCAGACCAGGGAGCCGCGAGGTTTGCTGCGGTGCACAAGGTGTTTGGCGCAAGTAATGTCTCAAAGCTTTTGCTGCACATACCTTTGAACCGCAGGAATGATACTGTCGTTACAATATCCTACGAGGCTCAAGCTCGCCTCTCCGACCCGGTTTATGGTTGTGTATCCACCATTCTTGCTTTACAACAACAGGTTGCATCTTTACAAACCGAGCTCGCAATGGTGCAAACTCAGCTGATAAACAGTAGATTTGCATTTGCAAATGCCATTCAAAGCTCGCAGCATCAGGAACAACAGCAAAACATGGCATTGCTGCAGCCTGCCTACTCCAACAACTCATCTGCTTCAACTAACCCGATCAACATGAGCAGCTTCACCTCCAATTTTAATCATGACCTCGCAGCTGAGACAGCACCATGTTCCCACAGCTTGGAGCCTCTTCTGCTCTCAAGGCCTTCTCAAGATGAAGAAGAAGATGAGCAACAAAGTCAAGTGCCCCACCATTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009060 GO:0009916 GO:0009987 GO:0010230 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

246

Amino Acids

26.92

Weight (kDa)

6.91

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	54 - 152	1.8e-34	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64210
fragaria_vesca	FvH4_4g05920 FvH4_4g05930
malus_domestica	MD13G1231500.v1.1 MD16G1236400.v1.1
prunus_persica	Prupe.1G061400_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061800_v2.0.a1 Prupe.1G061900_v2.0.a1 Prupe.1G061900_v2.0.a1
pyrus_communis	pycom16g19830
rosa_chinensis	RchiOBHm_Chr4g0397091 RchiOBHm_Chr4g0397111
rosa_laevigata	RLG00000009450
rosa_multiflora	Rmu_sc0002312.1_g000026 Rmu_sc0002312.1_g000031 Rmu_sc0007785.1_g000028 Rmu_sc0007785.1_g000034
rosa_roxburghii	Rroxscaffold_5G00342060 Rroxscaffold_5G00342080
rosa_rugosa	Rorug03G0344700 Rorug03G0344800
rosa_samantha	Rh4AG077300 Rh4BG072900 Rh4CG082500 Rh4DG070400 Rh4DG070500
rosa_wichuraiana	Rw0G015790 Rw0G015800 Rw4G006240 Rw4G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccII	CGCG	1 cut(s)	245
AciI	CCGC	4 cut(s)	72, 243, 257, 319
AclWI	GGATC	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	4 cut(s)	61, 224, 383, 658
AgsI	TTSAA	3 cut(s)	316, 500, 576
AjnI	CCWGG	1 cut(s)	234
Alw21I	GWGCWC	2 cut(s)	264, 444
Alw26I	GTCTC	2 cut(s)	292, 629
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	63, 680
ApaLI	GTGCAC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	595
BaeGI	GKGCMC	2 cut(s)	264, 726
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BanII	GRGCYC	1 cut(s)	444
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
Bbv12I	GWGCWC	2 cut(s)	264, 444
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	236
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	292, 629
BfaI	CTAG	1 cut(s)	739
BfmI	CTRYAG	2 cut(s)	147, 542
BfuI	GTATCC	1 cut(s)	403
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	236, 377
BmiI	GGNNCC	2 cut(s)	241, 663
BmrFI	CCNGG	2 cut(s)	236, 377
BmsI	GCATC	3 cut(s)	216, 434, 520
BpuEI	CTTGAG	3 cut(s)	342, 661, 672
BpuMI	CCSGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 224, 383, 658
Bse1I	ACTGG	2 cut(s)	85, 138
Bse3DI	GCAATG	2 cut(s)	453, 536
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	4 cut(s)	61, 224, 383, 658
BseMI	GCAATG	2 cut(s)	453, 536
BseMII	CTCAG	2 cut(s)	473, 624
BseNI	ACTGG	2 cut(s)	85, 138
BseSI	GKGCMC	2 cut(s)	264, 726
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	65, 682
BsiHKAI	GWGCWC	2 cut(s)	264, 444
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	4 cut(s)	61, 224, 383, 658
BsmAI	GTCTC	2 cut(s)	292, 629
BsnI	GGCC	2 cut(s)	65, 682
Bsp1286I	GDGCHC	3 cut(s)	264, 444, 726
Bsp143I	GATC	4 cut(s)	7, 112, 227, 585
BspACI	CCGC	4 cut(s)	72, 243, 257, 319
BspANI	GGCC	2 cut(s)	65, 682
BspCNI	CTCAG	2 cut(s)	472, 625
BspFNI	CGCG	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	241, 663
BspMAI	CTGCAG	2 cut(s)	151, 546
BspPI	GGATC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	453, 536
BsrI	ACTGG	2 cut(s)	85, 138
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	4 cut(s)	7, 112, 227, 585
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	2 cut(s)	334, 473
Bst6I	CTCTTC	1 cut(s)	672
BstC8I	GCNNGC	5 cut(s)	172, 364, 444, 506, 549
BstDEI	CTNAG	2 cut(s)	459, 633
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	4 cut(s)	10, 115, 230, 588
BstMAI	GTCTC	2 cut(s)	292, 629
BstMBI	GATC	4 cut(s)	7, 112, 227, 585
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	234, 375
BstSFI	CTRYAG	2 cut(s)	147, 542
BstSLI	GKGCMC	2 cut(s)	264, 726
BstUI	CGCG	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	65, 682
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	5 cut(s)	172, 364, 444, 506, 549
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	144
CspCI	CAANNNNNGTGG	3 cut(s)	385, 420, 716
CviAII	CATG	5 cut(s)	171, 532, 592, 620, 645
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	459, 633
DpnI	GATC	4 cut(s)	9, 114, 229, 587
DpnII	GATC	4 cut(s)	7, 112, 227, 585
DraIII	CACNNNGTG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Ecl136II	GAGCTC	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	5 cut(s)	174, 535, 595, 623, 648
FaiI	YATR	7 cut(s)	172, 308, 384, 533, 593, 621, 646
FatI	CATG	5 cut(s)	170, 531, 591, 619, 644
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	739
GlaI	GCGC	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	65, 682
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	5 cut(s)	174, 535, 595, 623, 648
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	46, 232, 373
Hpy188III	TCNNGA	3 cut(s)	515, 620, 689
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	180, 693
HpyCH4III	ACNGT	2 cut(s)	334, 473
HpyF3I	CTNAG	2 cut(s)	459, 633
Hsp92II	CATG	5 cut(s)	174, 535, 595, 623, 648
HspAI	GCGC	1 cut(s)	276
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 112, 227, 585
LmnI	GCTCC	4 cut(s)	163, 220, 239, 661
LpnPI	CCDG	9 cut(s)	66, 151, 221, 248, 307, 390, 404, 500, 561
LweI	GCATC	3 cut(s)	216, 434, 520
MaeI	CTAG	1 cut(s)	739
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	9, 114, 229, 587
MboI	GATC	4 cut(s)	7, 112, 227, 585
MboII	GAAGA	5 cut(s)	113, 659, 707, 710, 713
MhlI	GDGCHC	3 cut(s)	264, 444, 726
MluCI	AATT	1 cut(s)	610
MmeI	TCCRAC	2 cut(s)	396, 582
MnlI	CCTC	7 cut(s)	100, 240, 346, 377, 616, 635, 675
MseI	TTAA	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	463, 632
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	236, 377
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	245
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	4 cut(s)	7, 112, 227, 585
NlaIII	CATG	5 cut(s)	174, 535, 595, 623, 648
NlaIV	GGNNCC	2 cut(s)	241, 663
NspI	RCATGY	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	241, 663
PstI	CTGCAG	2 cut(s)	151, 546
PstNI	CAGNNNCTG	1 cut(s)	80
PvuII	CAGCTG	2 cut(s)	463, 632
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	615
Sau3AI	GATC	4 cut(s)	7, 112, 227, 585
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	236, 377
SduI	GDGCHC	3 cut(s)	264, 444, 726
SfaNI	GCATC	3 cut(s)	216, 434, 520
SfcI	CTRYAG	2 cut(s)	147, 542
SmlI	CTYRAG	3 cut(s)	357, 676, 687
SmoI	CTYRAG	3 cut(s)	357, 676, 687
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	1 cut(s)	610
SseBI	AGGCCT	1 cut(s)	682
SsiI	CCGC	4 cut(s)	72, 243, 257, 319
SspMI	CTAG	1 cut(s)	739
SstI	GAGCTC	1 cut(s)	444
StuI	AGGCCT	1 cut(s)	682
StyD4I	CCNGG	2 cut(s)	234, 375
TaaI	ACNGT	2 cut(s)	334, 473
TaqI	TCGA	1 cut(s)	58
TasI	AATT	1 cut(s)	610
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	113, 708
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	658
VneI	GTGCAC	1 cut(s)	260
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	1 cut(s)	739
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.