Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Reverse (-)

25960732 .. 25963258

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGTTTTAGATCGGTTTATCAATCTCTCACGGAGTTATTTCCACAGATTGATCCAAAGATTCTAAGAGGTGTTGCAATTGAGCACCAACATGATGCTGATGAAGCTGCCTCTGTTGTTATCTCTGAGATTTTCCCTTTCTCTTCCCCAAATTCCACTCAACCTCACAACAAGAACAAGACCAAGGTTTCCGACAATCCCCCTAACTTGAAAGTAAAATGTGACGATGGGAGTTTGTCTCTGTCTCAATGGCTTCAACCATCTAAGCTTCCACATAGTTACCTTGCTTTGCTCAACGAAGATTCTACACCTGATGTTAAACCTCCTCTCGATTACGTCGTGGAGAAAGTTGTTCTGCCAAGTCGTGGCCCTGCAACTGGTCTAGGAGGAGGGATCCGAACCATGTACTCTTCTGACAACATTGGTGGTTCTTCCTTGGTGAAACCCTCTATTCGTGTACAAAGCCGCACCAACAATGAACTCTCTGGAAGCAGCAGTAAGGTTCCTGGACGTAGACGATCCTCTCGCAAGTCTGTGCAGCCTTGGTCCCCAGACTACTCTGAGAAGCTTAGAAGTTGGAAAAAACGGAGCAACAACAACAACCGTGACTTCTCACAGCTCTTTGACAATGACATAGATGTACCCTCGACACGATCCAACAAATGTTATACCAATGAGCGTGAGCGCAAGCAGAGAATTGCCGATAACATCAAGGCATTAGGGAAATTGCTCCCACATAAAGTTGAGGGGGATAACCATGAATTGACACTGAATGCCATGGTTGATCATGTTAAGCTTCTGCATCTACAGATGAAGGAATTAAGTCGAAGCAGGTTGGGAGGAGAACCAATATCTCATCCTATGGCATTCATTGAGGGATACGGTCACTACATACATCACGAGCAGACGATGGCAAAATCTCTGGAGGAAGTAATGGAAGATCTGCTTACAAAGGACTTTGATGCTGCGGCTAACTTGTTGGAGAGCAAAGGCCTTTACTTAACGCCTTTGTCCTCTGTCCAAGGCTCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

344

Amino Acids

38.38

Weight (kDa)

8.58

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	822
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	514
AciI	CCGC	2 cut(s)	466, 968
AclWI	GGATC	5 cut(s)	47, 388, 401, 513, 648
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	3 cut(s)	407, 459, 642
AfiI	CCNNNNNNNGG	2 cut(s)	365, 377
AgsI	TTSAA	2 cut(s)	211, 257
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	107, 268, 568, 619, 796
AluI	AGCT	5 cut(s)	107, 268, 568, 619, 796
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	243, 249
AlwI	GGATC	5 cut(s)	47, 388, 401, 513, 648
AoxI	GGCC	2 cut(s)	367, 991
ApeKI	GCWGC	4 cut(s)	107, 492, 538, 965
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	2 cut(s)	368, 546
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	546
BamHI	GGATCC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	899
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	94, 504, 550, 952
BccI	CCATC	3 cut(s)	221, 268, 904
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	872
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	243, 249
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	806
BfuAI	ACCTGC	1 cut(s)	822
BfuI	GTATCC	1 cut(s)	872
BglII	AGATCT	1 cut(s)	940
BisI	GCNGC	6 cut(s)	108, 466, 493, 539, 966, 969
BlsI	GCNGC	6 cut(s)	109, 467, 494, 540, 967, 970
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	368, 546
BmiI	GGNNCC	4 cut(s)	395, 504, 548, 1027
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	3 cut(s)	85, 811, 952
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	944
BsaJI	CCNNGG	5 cut(s)	183, 435, 542, 777, 1021
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 377
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	5 cut(s)	183, 435, 542, 777, 1021
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	2 cut(s)	365, 377
BseMII	CTCAG	2 cut(s)	117, 552
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	3 cut(s)	315, 402, 855
BseXI	GCAGC	4 cut(s)	94, 504, 550, 952
BsgI	GTGCAG	1 cut(s)	557
BshFI	GGCC	2 cut(s)	369, 993
BsiHKAI	GWGCWC	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	2 cut(s)	365, 377
BsmAI	GTCTC	2 cut(s)	243, 249
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	2 cut(s)	778, 866
BsnI	GGCC	2 cut(s)	369, 993
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	2 cut(s)	466, 968
BspANI	GGCC	2 cut(s)	369, 993
BspCNI	CTCAG	2 cut(s)	118, 553
BspLI	GGNNCC	4 cut(s)	395, 504, 548, 1027
BspMI	ACCTGC	1 cut(s)	822
BspPI	GGATC	5 cut(s)	47, 388, 401, 513, 648
BsrGI	TGTACA	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	5 cut(s)	183, 435, 542, 777, 1021
BssMI	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
BssSI	CACGAG	1 cut(s)	899
BssT1I	CCWWGG	5 cut(s)	183, 435, 542, 777, 1021
Bst2BI	CACGAG	1 cut(s)	899
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	605, 884
Bst6I	CTCTTC	2 cut(s)	148, 415
BstAUI	TGTACA	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	689
BstDEI	CTNAG	5 cut(s)	65, 126, 264, 561, 569
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	7 cut(s)	14, 55, 396, 521, 656, 787, 943
BstMAI	GTCTC	2 cut(s)	243, 249
BstMBI	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	806
BstV1I	GCAGC	4 cut(s)	94, 504, 550, 952
BstX2I	RGATCY	2 cut(s)	393, 940
BstYI	RGATCY	2 cut(s)	393, 940
BsuI	GTATCC	1 cut(s)	872
BsuRI	GGCC	2 cut(s)	369, 993
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	856
BtsIMutI	CAGTG	1 cut(s)	767
BveI	ACCTGC	1 cut(s)	822
Cac8I	GCNNGC	1 cut(s)	689
CfoI	GCGC	1 cut(s)	687
Cfr13I	GGNCC	2 cut(s)	368, 546
Csp6I	GTAC	3 cut(s)	406, 458, 641
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	5 cut(s)	92, 403, 758, 778, 788
CviQI	GTAC	3 cut(s)	406, 458, 641
DdeI	CTNAG	5 cut(s)	65, 126, 264, 561, 569
DpnI	GATC	7 cut(s)	13, 54, 395, 520, 655, 786, 942
DpnII	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
Eam1104I	CTCTTC	2 cut(s)	148, 415
EarI	CTCTTC	2 cut(s)	148, 415
Eco130I	CCWWGG	5 cut(s)	183, 435, 542, 777, 1021
Eco147I	AGGCCT	1 cut(s)	993
Eco47I	GGWCC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	5 cut(s)	183, 435, 542, 777, 1021
ErhI	CCWWGG	5 cut(s)	183, 435, 542, 777, 1021
FaeI	CATG	5 cut(s)	95, 406, 761, 781, 791
FalI	AAGNNNNNCTT	2 cut(s)	930, 962
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	5 cut(s)	91, 402, 757, 777, 787
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	6 cut(s)	108, 466, 493, 539, 966, 969
FokI	GGATG	1 cut(s)	843
Fsp4HI	GCNGC	6 cut(s)	108, 466, 493, 539, 966, 969
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	6 cut(s)	108, 466, 493, 539, 966, 969
GsuI	CTGGAG	1 cut(s)	944
HaeIII	GGCC	2 cut(s)	369, 993
HhaI	GCGC	1 cut(s)	687
Hin1II	CATG	5 cut(s)	95, 406, 761, 781, 791
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HindIII	AAGCTT	3 cut(s)	266, 566, 794
HinfI	GANTC	2 cut(s)	61, 302
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	458, 515
Hpy188I	TCNGA	5 cut(s)	127, 193, 398, 415, 562
Hpy188III	TCNNGA	4 cut(s)	329, 486, 899, 923
Hpy8I	GTNNAC	2 cut(s)	458, 515
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	1 cut(s)	808
HpyCH4III	ACNGT	2 cut(s)	605, 884
HpyCH4IV	ACGT	2 cut(s)	336, 511
HpyCH4V	TGCA	4 cut(s)	77, 374, 538, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	5 cut(s)	65, 126, 264, 561, 569
HpySE526I	ACGT	2 cut(s)	336, 511
Hsp92II	CATG	5 cut(s)	95, 406, 761, 781, 791
HspAI	GCGC	1 cut(s)	685
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
LmnI	GCTCC	3 cut(s)	588, 735, 1031
LpnPI	CCDG	9 cut(s)	324, 363, 384, 471, 492, 519, 564, 817, 908
Lsp1109I	GCAGC	4 cut(s)	94, 504, 550, 952
LweI	GCATC	3 cut(s)	85, 811, 952
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	2 cut(s)	336, 511
MaeIII	GTNAC	4 cut(s)	221, 278, 605, 884
MalI	GATC	7 cut(s)	13, 54, 395, 520, 655, 786, 942
MboI	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
MboII	GAAGA	5 cut(s)	135, 311, 402, 423, 950
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	2 cut(s)	393, 940
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	6 cut(s)	78, 151, 696, 725, 761, 818
MmeI	TCCRAC	4 cut(s)	216, 557, 681, 960
MseI	TTAA	4 cut(s)	318, 792, 821, 1001
MslI	CAYNNNNRTG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	778, 866
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
NlaIII	CATG	5 cut(s)	95, 406, 761, 781, 791
NlaIV	GGNNCC	4 cut(s)	395, 504, 548, 1027
NmuCI	GTSAC	3 cut(s)	221, 605, 884
PceI	AGGCCT	1 cut(s)	993
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	2 cut(s)	778, 866
PfeI	GAWTC	2 cut(s)	61, 302
PflMI	CCANNNNNTGG	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	6 cut(s)	109, 467, 494, 540, 967, 970
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	4 cut(s)	395, 504, 548, 1027
PspPI	GGNCC	2 cut(s)	368, 546
PsuI	RGATCY	2 cut(s)	393, 940
RsaI	GTAC	3 cut(s)	407, 459, 642
RsaNI	GTAC	3 cut(s)	406, 458, 641
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	4 cut(s)	318, 792, 821, 1001
SatI	GCNGC	6 cut(s)	108, 466, 493, 539, 966, 969
Sau3AI	GATC	7 cut(s)	11, 52, 393, 518, 653, 784, 940
Sau96I	GGNCC	2 cut(s)	368, 546
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	3 cut(s)	85, 811, 952
SfcI	CTRYAG	1 cut(s)	806
SinI	GGWCC	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	78, 151, 696, 725, 761, 818
SseBI	AGGCCT	1 cut(s)	993
SsiI	CCGC	2 cut(s)	466, 968
SspMI	CTAG	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	993
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	5 cut(s)	183, 435, 542, 777, 1021
TaaI	ACNGT	2 cut(s)	605, 884
TaiI	ACGT	2 cut(s)	339, 514
TaqI	TCGA	3 cut(s)	330, 647, 826
TasI	AATT	6 cut(s)	78, 151, 696, 725, 761, 818
TatI	WGTACW	2 cut(s)	405, 457
TauI	GCSGC	2 cut(s)	468, 971
TfiI	GAWTC	2 cut(s)	61, 302
Tru1I	TTAA	4 cut(s)	318, 792, 821, 1001
Tru9I	TTAA	4 cut(s)	318, 792, 821, 1001
TscAI	CASTG	1 cut(s)	774
TseFI	GTSAC	3 cut(s)	221, 605, 884
TseI	GCWGC	4 cut(s)	107, 492, 538, 965
Tsp45I	GTSAC	3 cut(s)	221, 605, 884
TspDTI	ATGAA	5 cut(s)	117, 492, 774, 827, 859
TspGWI	ACGGA	2 cut(s)	47, 601
TspRI	CASTG	1 cut(s)	774
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	514
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.