Prupe.1G127000_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006228
Physical Location & Seq
Forward (+)
9979960 .. 9981654
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G127000.1

Sequence Viewer

Length: 423 bp
ATGCGCACACACAGGATTACACCAAATTCAGATTGGGTTTTTTCATTCTTCGTTCTTTCCTCTCCTCCCTCCCATTTCGTTTCATACTCAGCCAGCCGCCAGCCACCAACCACCGATTCCAAACCTCTCTCTCAACCAGCACGTCACAGTCACACCCCTCTCTGCCGCCGCTCTTCTCTTAGCCTCTCTCAGTCGTTGCAGCAAATCGGAGATCCCATTCACTCGCCGCGTCCACCTCTTCATCTCGTATGGCTCTCTGTCTCTGTCTCTGTCTCTCAGACAGACAAAGCTTCAATGCTGGATGAGATCATCGATTATGTCAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGCGGTGCAGCTACTGTTGCTCCTCTTGTTGCTGATGTGTCCTCTGAGGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016049 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0021700 GO:0022412 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048609 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0060255 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

141

Amino Acids

15.41

Weight (kDa)

9.42

Isoelectric Point (pI)

64.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 351
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 1 cut(s) 229
AciI CCGC 5 cut(s) 97, 166, 169, 227, 369
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 2 cut(s) 25, 323
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 294
AjiI CACGTC 1 cut(s) 143
AjuI GAANNNNNNNTTGG 4 cut(s) 100, 132, 330, 362
AluBI AGCT 3 cut(s) 290, 334, 377
AluI AGCT 3 cut(s) 290, 334, 377
Alw26I GTCTC 3 cut(s) 265, 271, 277
AlwI GGATC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 199, 374
ApoI RAATTY 2 cut(s) 25, 323
AspLEI GCGC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 211, 386
BcoDI GTCTC 3 cut(s) 265, 271, 277
BfuAI ACCTGC 1 cut(s) 351
BisI GCNGC 6 cut(s) 97, 166, 169, 200, 227, 375
BlsI GCNGC 6 cut(s) 98, 167, 170, 201, 228, 376
BmgBI CACGTC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 343
BseCI ATCGAT 1 cut(s) 312
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 5 cut(s) 102, 203, 290, 341, 402
BseRI GAGGAG 2 cut(s) 54, 378
BseXI GCAGC 2 cut(s) 211, 386
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 3 cut(s) 265, 271, 277
Bsp143I GATC 2 cut(s) 211, 306
BspACI CCGC 5 cut(s) 97, 166, 169, 227, 369
BspCNI CTCAG 5 cut(s) 101, 202, 289, 342, 403
BspDI ATCGAT 1 cut(s) 312
BspFNI CGCG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 171
BssMI GATC 2 cut(s) 211, 306
Bst4CI ACNGT 2 cut(s) 149, 382
Bst6I CTCTTC 2 cut(s) 178, 243
BstC8I GCNNGC 2 cut(s) 94, 101
BstDEI CTNAG 6 cut(s) 88, 179, 189, 276, 350, 411
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 214, 309
BstMAI GTCTC 3 cut(s) 265, 271, 277
BstMBI GATC 2 cut(s) 211, 306
BstMWI GCNNNNNNNGC 2 cut(s) 366, 383
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 211, 386
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 312
BtrI CACGTC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 307
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 94, 101
CaiI CAGNNNCTG 1 cut(s) 380
CfoI GCGC 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 1 cut(s) 218
CviAII CATG 1 cut(s) 355
CviJI RGCY 8 cut(s) 92, 96, 103, 183, 253, 290, 334, 377
CviKI_1 RGCY 8 cut(s) 92, 96, 103, 183, 253, 290, 334, 377
DdeI CTNAG 6 cut(s) 88, 179, 189, 276, 350, 411
DpnI GATC 2 cut(s) 213, 308
DpnII GATC 2 cut(s) 211, 306
Eam1104I CTCTTC 2 cut(s) 178, 243
EarI CTCTTC 2 cut(s) 178, 243
FaeI CATG 1 cut(s) 358
FaiI YATR 4 cut(s) 85, 250, 318, 356
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 6 cut(s) 97, 166, 169, 200, 227, 375
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 6 cut(s) 97, 166, 169, 200, 227, 375
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 6 cut(s) 97, 166, 169, 200, 227, 375
GsuI CTGGAG 1 cut(s) 314
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 5 cut(s) 31, 209, 279, 351, 412
Hpy8I GTNNAC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 149, 382
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 199, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 366, 383
HpyF3I CTNAG 6 cut(s) 88, 179, 189, 276, 350, 411
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 211, 306
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 339, 391
LpnPI CCDG 6 cut(s) 106, 113, 150, 284, 344, 346
Lsp1109I GCAGC 2 cut(s) 211, 386
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 143, 149
MalI GATC 2 cut(s) 213, 308
MbiI CCGCTC 1 cut(s) 171
MboI GATC 2 cut(s) 211, 306
MboII GAAGA 3 cut(s) 40, 165, 230
MflI RGATCY 1 cut(s) 211
MluCI AATT 3 cut(s) 25, 323, 418
MseI TTAA 1 cut(s) 421
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 366, 383
NdeII GATC 2 cut(s) 211, 306
NlaIII CATG 1 cut(s) 358
NmuCI GTSAC 2 cut(s) 143, 149
NsbI TGCGCA 1 cut(s) 5
PciSI GCTCTTC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 6 cut(s) 98, 167, 170, 201, 228, 376
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 6 cut(s) 97, 166, 169, 200, 227, 375
Sau3AI GATC 2 cut(s) 211, 306
SetI ASST 9 cut(s) 127, 145, 238, 292, 336, 348, 365, 379, 417
Sse9I AATT 3 cut(s) 25, 323, 418
SsiI CCGC 5 cut(s) 97, 166, 169, 227, 369
TaaI ACNGT 2 cut(s) 149, 382
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 312
TasI AATT 3 cut(s) 25, 323, 418
TauI GCSGC 4 cut(s) 99, 168, 171, 229
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TseFI GTSAC 2 cut(s) 143, 149
TseI GCWGC 2 cut(s) 199, 374
Tsp45I GTSAC 2 cut(s) 143, 149
TspDTI ATGAA 3 cut(s) 33, 72, 230
XapI RAATTY 2 cut(s) 25, 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.