Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

35268651 .. 35271507

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1267700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAGGGCAGAGTAGCCTCACCAACACCATACAAATGCTGTCAATGGGTTTCTGTGGGAATGCTGCGGATGATATCTCTGAGGCACTGGGATACAATCTGAACCAACAGGTTATGATGGAGGCTGGAAGGACTGCGGATCAAACTGATGTTCTTTCTTTACCTTGGTGGATTCAACCCGAAAAGCCATCCCACAATTACGTTGAGTATCTAGCTGAGAGTTCAGCATTTGTCCCAAAGTCTCCTTGTGAAGATATGTGGGAAAGCATTCCTTCATCTGTTGTTAGCATACATGATGTTGGCAGGGTCTCTGAATTCCAACGAGATGGGTTGTACAGTGGTCTGGGCAATGCTTGTGGTTCTAAATCAACTGATTTCTCTAGGGATATGGACTCTTCAAAGATGAAACTTCTGAGCCTACATAATGACGAACTTGTGAATACACAACATCAGCTTCCCATGCAGTATCATACTTCAAGGACAGATAATCCAAATTGGGATAGCTATGATAGTGTTTCTCAAGTTGATCCAAGAGCAACAATTGACACACCTGGTTCTCTTTGCCAACCACATCACATTGTTTCGAAGCAGAGAACATTTTCATCTGAATATAATCGCAGGATGCGAATCGGTGAAAGGCTCAGTGCATTGCAAGAACTGCTTCCAGAACCTGCAGAGGGTCGTCAAGTATGTGTACTGGATGATGTAATTGACCAGATCAAGTTTTTGAAGCTTCAGATAAAGGACTTAAGTAGAAGCAGATTGGGAGGTGAACCGATTGCTGAACCTATTATTTTCCGTGAGGGATATGGTCACTACTTTTGCCACCAGCAGATGCTGAATGAACCTCTCGAAGAAATGATCGGAAATTTACTGGAGGTAGATGTACTGGCAGCAAGCGAGCTGTTGGAGAAGAAAGGTCTTTTGCTGCTGCCAATGGAATACTCCGAAGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

321

Amino Acids

35.99

Weight (kDa)

4.7

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AciI	CCGC	2 cut(s)	68, 137
AclWI	GGATC	2 cut(s)	147, 521
AcsI	RAATTY	2 cut(s)	314, 868
AcuI	CTGAAG	1 cut(s)	719
AfaI	GTAC	3 cut(s)	335, 696, 888
AfiI	CCNNNNNNNGG	1 cut(s)	677
AflII	CTTAAG	1 cut(s)	748
AgsI	TTSAA	4 cut(s)	176, 399, 477, 730
AjnI	CCWGG	1 cut(s)	550
AluBI	AGCT	6 cut(s)	215, 454, 504, 733, 904, 959
AluI	AGCT	6 cut(s)	215, 454, 504, 733, 904, 959
Alw26I	GTCTC	2 cut(s)	246, 313
AlwI	GGATC	2 cut(s)	147, 521
AlwNI	CAGNNNCTG	2 cut(s)	671, 838
ApeKI	GCWGC	4 cut(s)	65, 893, 928, 931
ApoI	RAATTY	2 cut(s)	314, 868
Asp700I	GAANNNNTTC	3 cut(s)	267, 598, 660
AsuHPI	GGTGA	3 cut(s)	13, 644, 782
AsuII	TTCGAA	1 cut(s)	584
BbvI	GCAGC	4 cut(s)	52, 905, 915, 918
BccI	CCATC	3 cut(s)	112, 196, 320
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	246, 313
BfaI	CTAG	2 cut(s)	212, 381
BfmI	CTRYAG	1 cut(s)	672
BfrI	CTTAAG	1 cut(s)	748
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	4 cut(s)	66, 894, 929, 932
BlsI	GCNGC	4 cut(s)	67, 895, 930, 933
Bme1390I	CCNGG	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	612, 825
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	896
Bpu14I	TTCGAA	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse1I	ACTGG	4 cut(s)	93, 702, 879, 894
Bse3DI	GCAATG	2 cut(s)	355, 647
Bse8I	GATNNNNATC	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	4 cut(s)	76, 188, 627, 706
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	2 cut(s)	355, 647
BseMII	CTCAG	4 cut(s)	72, 207, 404, 655
BseNI	ACTGG	4 cut(s)	93, 702, 879, 894
BseXI	GCAGC	4 cut(s)	52, 905, 915, 918
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	2 cut(s)	246, 313
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	2 cut(s)	67, 267
Bso31I	GGTCTC	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	139, 526, 717, 861
BspACI	CCGC	2 cut(s)	68, 137
BspCNI	CTCAG	4 cut(s)	73, 208, 405, 654
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	2 cut(s)	147, 521
BspT104I	TTCGAA	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	748
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	355, 647
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	4 cut(s)	93, 702, 879, 894
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	4 cut(s)	139, 526, 717, 861
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	400
BstAFI	CTTAAG	1 cut(s)	748
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstAUI	TGTACA	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	898, 902
BstDEI	CTNAG	4 cut(s)	81, 216, 413, 641
BstF5I	GGATG	4 cut(s)	76, 188, 627, 706
BstKTI	GATC	4 cut(s)	142, 529, 720, 864
BstMAI	GTCTC	2 cut(s)	246, 313
BstMBI	GATC	4 cut(s)	139, 526, 717, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 658
BstNI	CCWGG	1 cut(s)	552
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	4 cut(s)	52, 905, 915, 918
BstXI	CCANNNNNNTGG	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	4 cut(s)	76, 188, 627, 706
BtsIMutI	CAGTG	3 cut(s)	86, 343, 649
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	898, 902
CaiI	CAGNNNCTG	2 cut(s)	671, 838
CsiI	ACCWGGT	1 cut(s)	550
Csp6I	GTAC	3 cut(s)	334, 695, 887
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	2 cut(s)	293, 460
CviQI	GTAC	3 cut(s)	334, 695, 887
DdeI	CTNAG	4 cut(s)	81, 216, 413, 641
DpnI	GATC	4 cut(s)	141, 528, 719, 863
DpnII	GATC	4 cut(s)	139, 526, 717, 861
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	550
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	296, 463
FalI	AAGNNNNNCTT	4 cut(s)	256, 288, 645, 677
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	292, 459
Fnu4HI	GCNGC	4 cut(s)	66, 894, 929, 932
FokI	GGATG	4 cut(s)	83, 175, 634, 713
Fsp4HI	GCNGC	4 cut(s)	66, 894, 929, 932
FspBI	CTAG	2 cut(s)	212, 381
GluI	GCNGC	4 cut(s)	66, 894, 929, 932
GsuI	CTGGAG	1 cut(s)	896
Hin1II	CATG	2 cut(s)	296, 463
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	4 cut(s)	172, 392, 627, 953
HphI	GGTGA	3 cut(s)	13, 644, 782
Hpy166II	GTNNAC	2 cut(s)	695, 773
Hpy188I	TCNGA	8 cut(s)	82, 102, 313, 414, 607, 738, 866, 949
Hpy188III	TCNNGA	2 cut(s)	665, 851
Hpy8I	GTNNAC	2 cut(s)	695, 773
HpyAV	CCTTC	2 cut(s)	123, 282
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	463, 647, 652, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 658
HpyF3I	CTNAG	4 cut(s)	81, 216, 413, 641
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	296, 463
Kzo9I	GATC	4 cut(s)	139, 526, 717, 861
Lsp1109I	GCAGC	4 cut(s)	52, 905, 915, 918
LweI	GCATC	2 cut(s)	612, 825
MabI	ACCWGGT	1 cut(s)	550
MaeI	CTAG	2 cut(s)	212, 381
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	812
MalI	GATC	4 cut(s)	141, 528, 719, 863
MboI	GATC	4 cut(s)	139, 526, 717, 861
MboII	GAAGA	5 cut(s)	263, 387, 866, 925, 962
MfeI	CAATTG	1 cut(s)	540
MluCI	AATT	6 cut(s)	196, 314, 493, 540, 708, 868
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	343, 888
MnlI	CCTC	8 cut(s)	29, 76, 115, 670, 761, 796, 858, 871
MroXI	GAANNNNTTC	3 cut(s)	267, 598, 660
MseI	TTAA	1 cut(s)	749
MslI	CAYNNNNRTG	1 cut(s)	35
MspCI	CTTAAG	1 cut(s)	748
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	67, 267
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	460, 658
NdeII	GATC	4 cut(s)	139, 526, 717, 861
NlaIII	CATG	2 cut(s)	296, 463
NmuCI	GTSAC	1 cut(s)	812
NspV	TTCGAA	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	622
PctI	GAATGC	2 cut(s)	67, 267
PdmI	GAANNNNTTC	3 cut(s)	267, 598, 660
PfeI	GAWTC	3 cut(s)	172, 627, 953
PkrI	GCNGC	4 cut(s)	67, 895, 930, 933
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	2 cut(s)	671, 838
RsaI	GTAC	3 cut(s)	335, 696, 888
RsaNI	GTAC	3 cut(s)	334, 695, 887
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	749
SatI	GCNGC	4 cut(s)	66, 894, 929, 932
Sau3AI	GATC	4 cut(s)	139, 526, 717, 861
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	552
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	2 cut(s)	612, 825
SfcI	CTRYAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	519, 748
SmoI	CTYRAG	2 cut(s)	519, 748
Sse9I	AATT	6 cut(s)	196, 314, 493, 540, 708, 868
SsiI	CCGC	2 cut(s)	68, 137
SspMI	CTAG	2 cut(s)	212, 381
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	584, 852
TasI	AATT	6 cut(s)	196, 314, 493, 540, 708, 868
TatI	WGTACW	3 cut(s)	333, 694, 886
TfiI	GAWTC	3 cut(s)	172, 627, 953
Tru1I	TTAA	1 cut(s)	749
Tru9I	TTAA	1 cut(s)	749
TscAI	CASTG	3 cut(s)	93, 343, 649
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	4 cut(s)	65, 893, 928, 931
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	4 cut(s)	264, 419, 591, 858
TspGWI	ACGGA	1 cut(s)	788
TspRI	CASTG	3 cut(s)	93, 343, 649
Vha464I	CTTAAG	1 cut(s)	748
XapI	RAATTY	2 cut(s)	314, 868
XmnI	GAANNNNTTC	3 cut(s)	267, 598, 660
XspI	CTAG	2 cut(s)	212, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.