Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

53576640 .. 53591554

Gene Structure 14915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG331500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCGAAGCAATTGGGAGTTTAGGGCTGACATTTACGACAAGTCGTGCTTCCTATTCAAAAGATTAGAAAATCGGGTCGGGTCGGACAATACGCTGAAGCCTTGTTCCAAAGAAGTTAAGGTGAAATCTGTTTCTCCTCTGGTTGATATGGAAGGAGAGAGTAGCCATAATGACCCCTTGCAATTGATGTCTTTAAATTTTGGTGGGAGTGTTGCGAATCATGTCTCTCGTGCGCCACAACATGATCTGAACCAAAAGATGATCATGGAAGCTGGAAGTAGTGTGAACCAAACTGATGCGCTTGCATTACCTTGGATGGTTCAATCCCCAATGCCGGCTCAAAGTTGTGTTGACTTTCTAGCAGAAAGTTCATCATTTCTGCCAAAATCTCCTTATGAAGACATGCTAGAGAGGATTTCTTTATCTGGTAGTGGCATACATGCTGCTGGTGGAGTCTCTGAATTCCATAGAGATTTGTTATACTGCAGCAGTCTTGGAAAAGCTTCTGGTTCTAAATCAATTGATTTCTCTATGGACATGGATCCTTGGAAGCATCATACTTCATGGACAGATAATTTCACTGGGGCTAGTTTTGACAATGTTTCTCAAATTGATCAAAAGTTAACACTGGCTGCACCTGGTTTTCCTTCCCTGCCACGTCAAAGTGCTACAAAACAGAAAGCTCTTGTAACTGATCGTGGTGGTCAAGAATTTGTACTGGATGATGTCATTGACCATATCAAGTTTATGCAGCTTCAAATAAAGGATCTAAGTAAAAGCAGATTGGGAGGTGAAACAATTACTGAACCGATGATTTTCCGCGAGGGATATGGTCACTACTTCTTACACCAGCAAATGCTGAGTGAACCTCTTGAAGAGATGATAGGAAAATTGCTGGAGACAAATCCAGCAGCAGCAGACCAGCTGTTAAAGGACAAGGGTCTTTCGATGGTGCCTCTGGGTTTAACCAAGAAATTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

327

Amino Acids

36.3

Weight (kDa)

5.7

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	952
AccII	CGCG	1 cut(s)	822
AciI	CCGC	1 cut(s)	820
AclWI	GGATC	3 cut(s)	536, 549, 774
AcsI	RAATTY	3 cut(s)	196, 461, 710
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	58, 323, 758, 875
AjiI	CACGTC	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	1 cut(s)	962
AluBI	AGCT	5 cut(s)	272, 503, 683, 754, 925
AluI	AGCT	5 cut(s)	272, 503, 683, 754, 925
Alw26I	GTCTC	3 cut(s)	229, 460, 893
AlwI	GGATC	3 cut(s)	536, 549, 774
ApeKI	GCWGC	6 cut(s)	443, 486, 632, 751, 911, 914
ApoI	RAATTY	3 cut(s)	196, 461, 710
Asp700I	GAANNNNTTC	2 cut(s)	502, 977
AspLEI	GCGC	2 cut(s)	235, 301
AsuHPI	GGTGA	2 cut(s)	133, 803
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	952
BauI	CACGAG	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	6 cut(s)	430, 498, 619, 763, 923, 926
BccI	CCATC	2 cut(s)	310, 943
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	2 cut(s)	261, 613
BcoDI	GTCTC	3 cut(s)	229, 460, 893
BfaI	CTAG	3 cut(s)	359, 407, 588
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	6 cut(s)	444, 487, 633, 752, 912, 915
BlsI	GCNGC	6 cut(s)	445, 488, 634, 753, 913, 916
Bme1390I	CCNGG	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	659
BmiI	GGNNCC	2 cut(s)	543, 954
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	286, 562
BmuI	ACTGGG	1 cut(s)	591
BoxI	GACNNNNGTC	1 cut(s)	939
BpiI	GAAGAC	1 cut(s)	405
BplI	GAGNNNNNCTC	2 cut(s)	853, 885
BpmI	CTGGAG	1 cut(s)	917
BsaJI	CCNNGG	2 cut(s)	311, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	3 cut(s)	586, 633, 723
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	311, 545
BseGI	GGATG	2 cut(s)	321, 727
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	851
BseNI	ACTGG	3 cut(s)	586, 633, 723
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	6 cut(s)	430, 498, 619, 763, 923, 926
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	822
BshNI	GGYRCC	1 cut(s)	952
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	3 cut(s)	229, 460, 893
Bsp143I	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
BspACI	CCGC	1 cut(s)	820
BspCNI	CTCAG	1 cut(s)	852
BspFNI	CGCG	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	543, 954
BspMAI	CTGCAG	1 cut(s)	488
BspPI	GGATC	3 cut(s)	536, 549, 774
BspT107I	GGYRCC	1 cut(s)	952
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	3 cut(s)	586, 633, 723
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	311, 545
BssMI	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	311, 545
Bst2BI	CACGAG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	639
Bst6I	CTCTTC	1 cut(s)	870
BstC8I	GCNNGC	2 cut(s)	303, 336
BstDEI	CTNAG	2 cut(s)	770, 860
BstF5I	GGATG	2 cut(s)	321, 727
BstFNI	CGCG	1 cut(s)	822
BstHHI	GCGC	2 cut(s)	235, 301
BstKTI	GATC	6 cut(s)	247, 264, 544, 616, 697, 769
BstMAI	GTCTC	3 cut(s)	229, 460, 893
BstMBI	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	2 cut(s)	406, 443
BstPAI	GACNNNNGTC	1 cut(s)	939
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	6 cut(s)	430, 498, 619, 763, 923, 926
BstV2I	GAAGAC	1 cut(s)	405
BstX2I	RGATCY	2 cut(s)	541, 766
BstYI	RGATCY	2 cut(s)	541, 766
BtrI	CACGTC	1 cut(s)	659
BtsCI	GGATG	2 cut(s)	321, 727
BtsIMutI	CAGTG	2 cut(s)	579, 626
Cac8I	GCNNGC	2 cut(s)	303, 336
CfoI	GCGC	2 cut(s)	235, 301
Cfr10I	RCCGGY	1 cut(s)	334
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	7 cut(s)	221, 242, 265, 403, 440, 538, 564
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	2 cut(s)	770, 860
DpnI	GATC	6 cut(s)	246, 263, 543, 615, 696, 768
DpnII	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Eco130I	CCWWGG	2 cut(s)	311, 545
Eco57I	CTGAAG	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	637
EcoT14I	CCWWGG	2 cut(s)	311, 545
ErhI	CCWWGG	2 cut(s)	311, 545
FaeI	CATG	7 cut(s)	224, 245, 268, 406, 443, 541, 567
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	7 cut(s)	220, 241, 264, 402, 439, 537, 563
FbaI	TGATCA	2 cut(s)	261, 613
Fnu4HI	GCNGC	6 cut(s)	444, 487, 633, 752, 912, 915
FokI	GGATG	2 cut(s)	328, 734
Fsp4HI	GCNGC	6 cut(s)	444, 487, 633, 752, 912, 915
FspBI	CTAG	3 cut(s)	359, 407, 588
GlaI	GCGC	2 cut(s)	234, 300
GluI	GCNGC	6 cut(s)	444, 487, 633, 752, 912, 915
GsuI	CTGGAG	1 cut(s)	917
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	2 cut(s)	235, 301
Hin1II	CATG	7 cut(s)	224, 245, 268, 406, 443, 541, 567
Hin6I	GCGC	2 cut(s)	233, 299
HinP1I	GCGC	2 cut(s)	233, 299
HincII	GTYRAC	2 cut(s)	352, 624
HindII	GTYRAC	2 cut(s)	352, 624
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	2 cut(s)	217, 453
HpaI	GTTAAC	1 cut(s)	624
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	133, 803
Hpy166II	GTNNAC	4 cut(s)	286, 352, 624, 866
Hpy188I	TCNGA	4 cut(s)	85, 249, 460, 983
Hpy188III	TCNNGA	2 cut(s)	707, 872
Hpy8I	GTNNAC	4 cut(s)	286, 352, 624, 866
HpyAV	CCTTC	2 cut(s)	146, 657
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	5 cut(s)	181, 305, 486, 635, 751
HpyF3I	CTNAG	2 cut(s)	770, 860
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	7 cut(s)	224, 245, 268, 406, 443, 541, 567
HspAI	GCGC	2 cut(s)	233, 299
KroI	GCCGGC	1 cut(s)	334
KroNI	GCCGGC	1 cut(s)	336
Ksp22I	TGATCA	2 cut(s)	261, 613
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
Lsp1109I	GCAGC	6 cut(s)	430, 498, 619, 763, 923, 926
LweI	GCATC	2 cut(s)	286, 562
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	3 cut(s)	359, 407, 588
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	2 cut(s)	688, 833
MalI	GATC	6 cut(s)	246, 263, 543, 615, 696, 768
MboI	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
MboII	GAAGA	2 cut(s)	410, 887
MfeI	CAATTG	3 cut(s)	10, 182, 519
MflI	RGATCY	2 cut(s)	541, 766
MlyI	GAGTC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	147, 405, 782, 817, 879, 966
MroNI	GCCGGC	1 cut(s)	334
MroXI	GAANNNNTTC	2 cut(s)	502, 977
MseI	TTAA	5 cut(s)	117, 194, 623, 929, 965
MspA1I	CMGCKG	1 cut(s)	925
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	3 cut(s)	10, 182, 519
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	822
NaeI	GCCGGC	1 cut(s)	336
NdeII	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
NgoMIV	GCCGGC	1 cut(s)	334
NlaIII	CATG	7 cut(s)	224, 245, 268, 406, 443, 541, 567
NlaIV	GGNNCC	2 cut(s)	543, 954
NmuCI	GTSAC	1 cut(s)	833
NspI	RCATGY	2 cut(s)	406, 443
PdiI	GCCGGC	1 cut(s)	336
PdmI	GAANNNNTTC	2 cut(s)	502, 977
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	6 cut(s)	445, 488, 634, 753, 913, 916
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PshAI	GACNNNNGTC	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	543, 954
PstI	CTGCAG	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	541, 766
PvuII	CAGCTG	1 cut(s)	925
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
SaqAI	TTAA	5 cut(s)	117, 194, 623, 929, 965
SatI	GCNGC	6 cut(s)	444, 487, 633, 752, 912, 915
Sau3AI	GATC	6 cut(s)	244, 261, 541, 613, 694, 766
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	639
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	286, 562
SfcI	CTRYAG	1 cut(s)	484
SsiI	CCGC	1 cut(s)	820
SspMI	CTAG	3 cut(s)	359, 407, 588
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	2 cut(s)	311, 545
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	947
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	5 cut(s)	117, 194, 623, 929, 965
Tru9I	TTAA	5 cut(s)	117, 194, 623, 929, 965
TscAI	CASTG	2 cut(s)	586, 633
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	6 cut(s)	443, 486, 632, 751, 911, 914
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	3 cut(s)	360, 411, 552
TspRI	CASTG	2 cut(s)	586, 633
XapI	RAATTY	3 cut(s)	196, 461, 710
XceI	RCATGY	2 cut(s)	406, 443
XmnI	GAANNNNTTC	2 cut(s)	502, 977
XspI	CTAG	3 cut(s)	359, 407, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.