Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0006228

Physical Location & Seq

Genomic Coordinates Forward (+)

81645 .. 83956

Gene Structure 2312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003735.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggaaggagagagtagccataatgaccccttgcaattgatgtctttgaattttggcgggagtgttgcgaatcatctctcttgtgctccacaacatgaactgaaccaaaagatgatcatggaagctggaagtagtgtgaaccaaactgatgcgcttgcattaccttggatggttcaatccccaatgccggctcaaagttgtgttgactttctagcagaaagttcatcatttctgccaaaatctccttatgaagacatgctagagaggatttctttatctggtagtggcatacatgctgctggtggagtctctgaattccatagagatttgttatactgcagcagtcttggaaaacctactggttctaaatcaattgatttctctatggacatggatccttggaagggtggtcaagaatttgtactggatgatgtcattgaccatatcaagtttttgcagcttcaaataaaggatctaagtaaaagcagattgggaggtgaaacaattactgaaccgatgattttccgcgagggatatggtcactacttcttacgccagcaaatgctgagtgaacctcttgaagagatgatcggaaaattgctggagacaaatccagcagcagcagaccagctgttaaaggacaagggtctttcgatggtgcctctgggtttaaccaagaaattattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

229

Amino Acids

25.23

Weight (kDa)

4.94

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64980 AT5G64980
fragaria_vesca	FvH4_2g23820 FvH4_2g23820
malus_domestica	MD03G1267700.v1.1
prunus_persica	Prupe.1G127000_v2.0.a1 Prupe.1G199200_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1 Prupe.8G243500_v2.0.a1
pyrus_communis	pycom03g21390
rosa_chinensis	RchiOBHm_Chr6g0291401
rosa_laevigata	RLG00000012117
rosa_multiflora	Rmu_sc0003735.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176080
rosa_rugosa	Rorug06G0219000 Rorug06G0219000
rosa_samantha	Rh6AG331300 Rh6BG338200 Rh6CG344500 Rh6DG331500
rosa_wichuraiana	Rw6G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	658
AccII	CGCG	1 cut(s)	528
AciI	CCGC	2 cut(s)	57, 526
AclWI	GGATC	3 cut(s)	389, 402, 480
AcsI	RAATTY	3 cut(s)	49, 314, 416
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	187, 404
AgsI	TTSAA	4 cut(s)	49, 176, 464, 581
AjuI	GAANNNNNNNTTGG	1 cut(s)	668
AluBI	AGCT	3 cut(s)	125, 460, 631
AluI	AGCT	3 cut(s)	125, 460, 631
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	313, 599
AlwI	GGATC	3 cut(s)	389, 402, 480
ApeKI	GCWGC	5 cut(s)	296, 339, 457, 617, 620
ApoI	RAATTY	3 cut(s)	49, 314, 416
Asp700I	GAANNNNTTC	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	509
BamHI	GGATCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	658
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	5 cut(s)	283, 351, 469, 629, 632
BccI	CCATC	2 cut(s)	163, 649
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	313, 599
BfaI	CTAG	2 cut(s)	212, 260
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	5 cut(s)	297, 340, 458, 618, 621
BlsI	GCNGC	5 cut(s)	298, 341, 459, 619, 622
BmiI	GGNNCC	2 cut(s)	396, 660
BmsI	GCATC	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	559, 591
BpmI	CTGGAG	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	164, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 404
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	364, 429
BseDI	CCNNGG	2 cut(s)	164, 398
BseGI	GGATG	2 cut(s)	174, 433
BseLI	CCNNNNNNNGG	2 cut(s)	187, 404
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	364, 429
BseXI	GCAGC	5 cut(s)	283, 351, 469, 629, 632
Bsh1236I	CGCG	1 cut(s)	528
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	187, 404
BsmAI	GTCTC	2 cut(s)	313, 599
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	114, 394, 472, 588
BspACI	CCGC	2 cut(s)	57, 526
BspCNI	CTCAG	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	2 cut(s)	396, 660
BspMAI	CTGCAG	1 cut(s)	341
BspPI	GGATC	3 cut(s)	389, 402, 480
BspT107I	GGYRCC	1 cut(s)	658
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	364, 429
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	164, 398
BssMI	GATC	4 cut(s)	114, 394, 472, 588
BssT1I	CCWWGG	2 cut(s)	164, 398
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	3 cut(s)	156, 189, 557
BstDEI	CTNAG	2 cut(s)	476, 566
BstF5I	GGATG	2 cut(s)	174, 433
BstFNI	CGCG	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	4 cut(s)	117, 397, 475, 591
BstMAI	GTCTC	2 cut(s)	313, 599
BstMBI	GATC	4 cut(s)	114, 394, 472, 588
BstNSI	RCATGY	2 cut(s)	259, 296
BstPAI	GACNNNNGTC	1 cut(s)	645
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	5 cut(s)	283, 351, 469, 629, 632
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	394, 472
BstYI	RGATCY	2 cut(s)	394, 472
BtsCI	GGATG	2 cut(s)	174, 433
Cac8I	GCNNGC	3 cut(s)	156, 189, 557
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	5 cut(s)	95, 118, 256, 293, 391
CviJI	RGCY	5 cut(s)	18, 125, 191, 460, 631
CviKI_1	RGCY	5 cut(s)	18, 125, 191, 460, 631
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	2 cut(s)	476, 566
DpnI	GATC	4 cut(s)	116, 396, 474, 590
DpnII	GATC	4 cut(s)	114, 394, 472, 588
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	164, 398
EcoRI	GAATTC	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	164, 398
ErhI	CCWWGG	2 cut(s)	164, 398
FaeI	CATG	5 cut(s)	98, 121, 259, 296, 394
FatI	CATG	5 cut(s)	94, 117, 255, 292, 390
FauI	CCCGC	1 cut(s)	50
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	297, 340, 458, 618, 621
FokI	GGATG	2 cut(s)	181, 440
Fsp4HI	GCNGC	5 cut(s)	297, 340, 458, 618, 621
FspBI	CTAG	2 cut(s)	212, 260
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	297, 340, 458, 618, 621
GsuI	CTGGAG	1 cut(s)	623
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	98, 121, 259, 296, 394
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	70, 306
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	3 cut(s)	139, 205, 572
Hpy188I	TCNGA	3 cut(s)	313, 593, 689
Hpy188III	TCNNGA	2 cut(s)	413, 578
Hpy8I	GTNNAC	3 cut(s)	139, 205, 572
HpyAV	CCTTC	1 cut(s)	397
HpyCH4V	TGCA	4 cut(s)	34, 158, 339, 457
HpyF3I	CTNAG	2 cut(s)	476, 566
Hsp92II	CATG	5 cut(s)	98, 121, 259, 296, 394
HspAI	GCGC	1 cut(s)	152
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	114, 394, 472, 588
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	5 cut(s)	283, 351, 469, 629, 632
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	212, 260
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	4 cut(s)	116, 396, 474, 590
MboI	GATC	4 cut(s)	114, 394, 472, 588
MboII	GAAGA	2 cut(s)	263, 593
MfeI	CAATTG	2 cut(s)	35, 372
MflI	RGATCY	2 cut(s)	394, 472
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	8 cut(s)	35, 49, 314, 372, 416, 504, 596, 680
MlyI	GAGTC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	258, 488, 523, 585, 672
MroNI	GCCGGC	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	683
MseI	TTAA	2 cut(s)	635, 671
MspA1I	CMGCKG	1 cut(s)	631
MspI	CCGG	1 cut(s)	188
MunI	CAATTG	2 cut(s)	35, 372
MvnI	CGCG	1 cut(s)	528
NaeI	GCCGGC	1 cut(s)	189
NdeII	GATC	4 cut(s)	114, 394, 472, 588
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	98, 121, 259, 296, 394
NlaIV	GGNNCC	2 cut(s)	396, 660
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	2 cut(s)	259, 296
PdiI	GCCGGC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	683
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	298, 341, 459, 619, 622
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	396, 660
PstI	CTGCAG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	394, 472
PvuII	CAGCTG	1 cut(s)	631
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	635, 671
SatI	GCNGC	5 cut(s)	297, 340, 458, 618, 621
Sau3AI	GATC	4 cut(s)	114, 394, 472, 588
SchI	GAGTC	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	7 cut(s)	127, 166, 358, 462, 499, 577, 633
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	337
Sse9I	AATT	8 cut(s)	35, 49, 314, 372, 416, 504, 596, 680
SsiI	CCGC	2 cut(s)	57, 526
SspMI	CTAG	2 cut(s)	212, 260
StyI	CCWWGG	2 cut(s)	164, 398
TaqI	TCGA	1 cut(s)	653
TasI	AATT	8 cut(s)	35, 49, 314, 372, 416, 504, 596, 680
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	635, 671
Tru9I	TTAA	2 cut(s)	635, 671
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	5 cut(s)	296, 339, 457, 617, 620
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	3 cut(s)	111, 213, 264
XapI	RAATTY	3 cut(s)	49, 314, 416
XceI	RCATGY	2 cut(s)	259, 296
XmnI	GAANNNNTTC	1 cut(s)	683
XspI	CTAG	2 cut(s)	212, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.