Phenazine biosynthesis-like domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 114 - 162 | 8.9e-09 | PPR repeat family |
| PPR_1 | PF12854 | 213 - 244 | 3.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 216 - 262 | 1.1e-10 | PPR repeat family |
| PPR | PF01535 | 218 - 247 | 1.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 281 - 327 | 2.5e-08 | PPR repeat family |
| PPR_2 | PF13041 | 383 - 430 | 1.7e-13 | PPR repeat family |
| PPR | PF01535 | 385 - 415 | 1.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 484 - 532 | 4.6e-07 | PPR repeat family |
| PPR_2 | PF13041 | 585 - 630 | 1.7e-09 | PPR repeat family |
| PPR_2 | PF13041 | 689 - 733 | 3.5e-09 | PPR repeat family |
| PPR | PF01535 | 689 - 717 | 4.5e-07 | PPR repeat |
| PPR_long | PF17177 | 699 - 851 | 1.3e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 789 - 836 | 8.7e-13 | PPR repeat family |
| PPR | PF01535 | 791 - 819 | 2e-08 | PPR repeat |
| E_motif | PF20431 | 910 - 967 | 3.6e-16 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2478 |
| Acc36I | ACCTGC | 2 cut(s) | 212, 391 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2350 |
| AccBSI | CCGCTC | 1 cut(s) | 97 |
| AccI | GTMKAC | 3 cut(s) | 511, 1576, 2295 |
| AciI | CCGC | 6 cut(s) | 49, 95, 162, 741, 2076, 2744 |
| AclWI | GGATC | 2 cut(s) | 1413, 2227 |
| AcoI | YGGCCR | 1 cut(s) | 1569 |
| AcsI | RAATTY | 6 cut(s) | 117, 233, 1357, 2042, 2674, 2964 |
| AcuI | CTGAAG | 4 cut(s) | 22, 1878, 2547, 2777 |
| AcyI | GRCGYC | 1 cut(s) | 2475 |
| AdeI | CACNNNGTG | 2 cut(s) | 157, 1727 |
| AfaI | GTAC | 6 cut(s) | 484, 1391, 1938, 2356, 2670, 2984 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 223, 657, 1704, 2313, 2350 |
| AflIII | ACRYGT | 2 cut(s) | 2279, 2298 |
| AgsI | TTSAA | 9 cut(s) | 22, 198, 232, 239, 381, 686, 1601, 1849, 1872 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1456, 1622 |
| AjnI | CCWGG | 5 cut(s) | 222, 300, 2289, 2576, 2884 |
| AluBI | AGCT | 6 cut(s) | 184, 905, 998, 1435, 1677, 2328 |
| AluI | AGCT | 6 cut(s) | 184, 905, 998, 1435, 1677, 2328 |
| Alw21I | GWGCWC | 3 cut(s) | 574, 1437, 1679 |
| Alw26I | GTCTC | 6 cut(s) | 1443, 1637, 1765, 1984, 2715, 2949 |
| Alw44I | GTGCAC | 1 cut(s) | 570 |
| AlwI | GGATC | 2 cut(s) | 1413, 2227 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2755 |
| Ama87I | CYCGRG | 1 cut(s) | 395 |
| AoxI | GGCC | 4 cut(s) | 759, 1569, 1948, 2688 |
| ApaLI | GTGCAC | 1 cut(s) | 570 |
| ApeKI | GCWGC | 5 cut(s) | 694, 995, 1112, 2595, 2957 |
| ApoI | RAATTY | 6 cut(s) | 117, 233, 1357, 2042, 2674, 2964 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 452 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 4 cut(s) | 751, 1895, 2073, 2688 |
| AsuHPI | GGTGA | 5 cut(s) | 176, 505, 1238, 1976, 2884 |
| AsuII | TTCGAA | 1 cut(s) | 1803 |
| AvaI | CYCGRG | 1 cut(s) | 395 |
| AvaII | GGWCC | 3 cut(s) | 751, 1895, 2073 |
| AxyI | CCTNAGG | 1 cut(s) | 8 |
| BaeGI | GKGCMC | 2 cut(s) | 574, 2290 |
| BalI | TGGCCA | 1 cut(s) | 1571 |
| BanII | GRGCYC | 2 cut(s) | 1437, 1679 |
| BbsI | GAAGAC | 1 cut(s) | 1924 |
| Bbv12I | GWGCWC | 3 cut(s) | 574, 1437, 1679 |
| BbvI | GCAGC | 5 cut(s) | 681, 1007, 1099, 2582, 2944 |
| BccI | CCATC | 5 cut(s) | 114, 532, 1861, 1955, 2613 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 114, 148, 238, 272, 2114, 2148 |
| BciT130I | CCWGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| BciVI | GTATCC | 2 cut(s) | 640, 1573 |
| BclI | TGATCA | 2 cut(s) | 1252, 2584 |
| BcoDI | GTCTC | 6 cut(s) | 1443, 1637, 1765, 1984, 2715, 2949 |
| BfaI | CTAG | 8 cut(s) | 260, 794, 803, 1001, 1304, 1652, 2660, 2802 |
| BfuAI | ACCTGC | 2 cut(s) | 212, 391 |
| BfuI | GTATCC | 2 cut(s) | 640, 1573 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 317 |
| BglII | AGATCT | 3 cut(s) | 953, 2433, 2538 |
| BisI | GCNGC | 7 cut(s) | 95, 695, 996, 1113, 2596, 2745, 2958 |
| BlsI | GCNGC | 7 cut(s) | 96, 696, 997, 1114, 2597, 2746, 2959 |
| BmcAI | AGTACT | 2 cut(s) | 1938, 2984 |
| Bme1390I | CCNGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| Bme18I | GGWCC | 3 cut(s) | 751, 1895, 2073 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1456, 1622 |
| BmeT110I | CYCGRG | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 4 cut(s) | 751, 1895, 2073, 2688 |
| BmiI | GGNNCC | 2 cut(s) | 85, 1424 |
| BmrFI | CCNGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| BmrI | ACTGGG | 1 cut(s) | 1922 |
| BmuI | ACTGGG | 1 cut(s) | 1922 |
| BpiI | GAAGAC | 1 cut(s) | 1924 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2825, 2857 |
| BpmI | CTGGAG | 1 cut(s) | 1430 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| Bpu14I | TTCGAA | 1 cut(s) | 1803 |
| BpuEI | CTTGAG | 3 cut(s) | 566, 719, 970 |
| BsaAI | YACGTR | 1 cut(s) | 1063 |
| BsaHI | GRCGYC | 1 cut(s) | 2475 |
| BsaI | GGTCTC | 1 cut(s) | 1765 |
| BsaJI | CCNNGG | 7 cut(s) | 222, 223, 301, 1566, 2289, 2576, 2577 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 223, 657, 1704, 2313, 2350 |
| Bse1I | ACTGG | 6 cut(s) | 1572, 1611, 1917, 2181, 2260, 2831 |
| Bse21I | CCTNAGG | 1 cut(s) | 8 |
| Bse3DI | GCAATG | 4 cut(s) | 471, 1747, 1897, 2120 |
| BseBI | CCWGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| BseDI | CCNNGG | 7 cut(s) | 222, 223, 301, 1566, 2289, 2576, 2577 |
| BseGI | GGATG | 7 cut(s) | 59, 349, 1723, 2275, 2323, 2780, 2947 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 223, 657, 1704, 2313, 2350 |
| BseMI | GCAATG | 4 cut(s) | 471, 1747, 1897, 2120 |
| BseMII | CTCAG | 4 cut(s) | 22, 81, 2107, 2762 |
| BseNI | ACTGG | 6 cut(s) | 1572, 1611, 1917, 2181, 2260, 2831 |
| BseRI | GAGGAG | 3 cut(s) | 2129, 2657, 2863 |
| BseSI | GKGCMC | 2 cut(s) | 574, 2290 |
| BseXI | GCAGC | 5 cut(s) | 681, 1007, 1099, 2582, 2944 |
| BseYI | CCCAGC | 2 cut(s) | 1670, 2933 |
| BsgI | GTGCAG | 2 cut(s) | 654, 1508 |
| BshFI | GGCC | 4 cut(s) | 761, 1571, 1950, 2690 |
| BsiHKAI | GWGCWC | 3 cut(s) | 574, 1437, 1679 |
| BsiHKCI | CYCGRG | 1 cut(s) | 395 |
| BslFI | GGGAC | 4 cut(s) | 1629, 2103, 2922, 2951 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 223, 657, 1704, 2313, 2350 |
| BsmAI | GTCTC | 6 cut(s) | 1443, 1637, 1765, 1984, 2715, 2949 |
| BsmBI | CGTCTC | 1 cut(s) | 2715 |
| BsmFI | GGGAC | 4 cut(s) | 1629, 2103, 2922, 2951 |
| BsmI | GAATGC | 4 cut(s) | 1272, 1324, 1471, 1774 |
| BsnI | GGCC | 4 cut(s) | 761, 1571, 1950, 2690 |
| Bso31I | GGTCTC | 1 cut(s) | 1765 |
| BsoBI | CYCGRG | 1 cut(s) | 395 |
| Bsp119I | TTCGAA | 1 cut(s) | 1803 |
| Bsp1286I | GDGCHC | 4 cut(s) | 574, 1437, 1679, 2290 |
| Bsp1407I | TGTACA | 1 cut(s) | 482 |
| Bsp143I | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| BspACI | CCGC | 6 cut(s) | 49, 95, 162, 741, 2076, 2744 |
| BspANI | GGCC | 4 cut(s) | 761, 1571, 1950, 2690 |
| BspCNI | CTCAG | 4 cut(s) | 21, 82, 2106, 2761 |
| BspHI | TCATGA | 1 cut(s) | 2533 |
| BspLI | GGNNCC | 2 cut(s) | 85, 1424 |
| BspMI | ACCTGC | 2 cut(s) | 212, 391 |
| BspPI | GGATC | 2 cut(s) | 1413, 2227 |
| BspT104I | TTCGAA | 1 cut(s) | 1803 |
| BspTNI | GGTCTC | 1 cut(s) | 1765 |
| BsrBI | CCGCTC | 1 cut(s) | 97 |
| BsrDI | GCAATG | 4 cut(s) | 471, 1747, 1897, 2120 |
| BsrGI | TGTACA | 1 cut(s) | 482 |
| BsrI | ACTGG | 6 cut(s) | 1572, 1611, 1917, 2181, 2260, 2831 |
| BssECI | CCNNGG | 7 cut(s) | 222, 223, 301, 1566, 2289, 2576, 2577 |
| BssMI | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| BssNAI | GTATAC | 1 cut(s) | 1577 |
| BssNI | GRCGYC | 1 cut(s) | 2475 |
| BssT1I | CCWWGG | 1 cut(s) | 1566 |
| Bst1107I | GTATAC | 1 cut(s) | 1577 |
| Bst2UI | CCWGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| Bst4CI | ACNGT | 4 cut(s) | 632, 652, 772, 1631 |
| Bst6I | CTCTTC | 3 cut(s) | 116, 1488, 3045 |
| BstACI | GRCGYC | 1 cut(s) | 2475 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2177, 2423 |
| BstAUI | TGTACA | 1 cut(s) | 482 |
| BstBAI | YACGTR | 1 cut(s) | 1063 |
| BstBI | TTCGAA | 1 cut(s) | 1803 |
| BstC8I | GCNNGC | 9 cut(s) | 137, 186, 814, 879, 1295, 1888, 2600, 2707, 2742 |
| BstEII | GGTNACC | 1 cut(s) | 296 |
| BstF5I | GGATG | 7 cut(s) | 59, 349, 1723, 2275, 2323, 2780, 2947 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 9 cut(s) | 956, 1255, 1408, 2235, 2391, 2436, 2541, 2587, 2608 |
| BstMAI | GTCTC | 6 cut(s) | 1443, 1637, 1765, 1984, 2715, 2949 |
| BstMBI | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 10, 48, 218, 317, 2177, 2423 |
| BstNI | CCWGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| BstPI | GGTNACC | 1 cut(s) | 296 |
| BstSCI | CCNGG | 5 cut(s) | 222, 300, 2289, 2576, 2884 |
| BstSLI | GKGCMC | 2 cut(s) | 574, 2290 |
| BstSNI | TACGTA | 1 cut(s) | 1063 |
| BstV1I | GCAGC | 5 cut(s) | 681, 1007, 1099, 2582, 2944 |
| BstV2I | GAAGAC | 1 cut(s) | 1924 |
| BstX2I | RGATCY | 5 cut(s) | 953, 1405, 2232, 2433, 2538 |
| BstYI | RGATCY | 5 cut(s) | 953, 1405, 2232, 2433, 2538 |
| BstZ17I | GTATAC | 1 cut(s) | 1577 |
| Bsu36I | CCTNAGG | 1 cut(s) | 8 |
| BsuI | GTATCC | 2 cut(s) | 640, 1573 |
| BsuRI | GGCC | 4 cut(s) | 761, 1571, 1950, 2690 |
| BtsCI | GGATG | 7 cut(s) | 59, 349, 1723, 2275, 2323, 2780, 2947 |
| BtsI | GCAGTG | 4 cut(s) | 642, 1759, 2496, 2693 |
| BtsIMutI | CAGTG | 9 cut(s) | 637, 642, 1604, 1627, 1759, 1910, 2188, 2496, 2693 |
| BveI | ACCTGC | 2 cut(s) | 212, 391 |
| Cac8I | GCNNGC | 9 cut(s) | 137, 186, 814, 879, 1295, 1888, 2600, 2707, 2742 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2755 |
| CciI | TCATGA | 1 cut(s) | 2533 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 4 cut(s) | 751, 1895, 2073, 2688 |
| Csp6I | GTAC | 6 cut(s) | 483, 1390, 1937, 2355, 2669, 2983 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 831, 866, 2680, 2715 |
| CviQI | GTAC | 6 cut(s) | 483, 1390, 1937, 2355, 2669, 2983 |
| DpnI | GATC | 9 cut(s) | 955, 1254, 1407, 2234, 2390, 2435, 2540, 2586, 2607 |
| DpnII | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| DraI | TTTAAA | 1 cut(s) | 2979 |
| DraIII | CACNNNGTG | 2 cut(s) | 157, 1727 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1456, 1622 |
| EaeI | YGGCCR | 1 cut(s) | 1569 |
| Eam1104I | CTCTTC | 3 cut(s) | 116, 1488, 3045 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1456, 1622 |
| EarI | CTCTTC | 3 cut(s) | 116, 1488, 3045 |
| Ecl136II | GAGCTC | 2 cut(s) | 1435, 1677 |
| Eco105I | TACGTA | 1 cut(s) | 1063 |
| Eco130I | CCWWGG | 1 cut(s) | 1566 |
| Eco147I | AGGCCT | 1 cut(s) | 1950 |
| Eco24I | GRGCYC | 2 cut(s) | 1437, 1679 |
| Eco31I | GGTCTC | 1 cut(s) | 1765 |
| Eco32I | GATATC | 1 cut(s) | 555 |
| Eco47I | GGWCC | 3 cut(s) | 751, 1895, 2073 |
| Eco53kI | GAGCTC | 2 cut(s) | 1435, 1677 |
| Eco57I | CTGAAG | 4 cut(s) | 22, 1878, 2547, 2777 |
| Eco81I | CCTNAGG | 1 cut(s) | 8 |
| Eco88I | CYCGRG | 1 cut(s) | 395 |
| Eco91I | GGTNACC | 1 cut(s) | 296 |
| EcoICRI | GAGCTC | 2 cut(s) | 1435, 1677 |
| EcoO65I | GGTNACC | 1 cut(s) | 296 |
| EcoRI | GAATTC | 1 cut(s) | 2042 |
| EcoRII | CCWGG | 5 cut(s) | 222, 300, 2289, 2576, 2884 |
| EcoRV | GATATC | 1 cut(s) | 555 |
| EcoT14I | CCWWGG | 1 cut(s) | 1566 |
| EcoT22I | ATGCAT | 5 cut(s) | 784, 814, 1378, 1888, 2428 |
| EcoT38I | GRGCYC | 2 cut(s) | 1437, 1679 |
| ErhI | CCWWGG | 1 cut(s) | 1566 |
| Esp3I | CGTCTC | 1 cut(s) | 2715 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 558, 590 |
| FaqI | GGGAC | 4 cut(s) | 1629, 2103, 2922, 2951 |
| FauNDI | CATATG | 1 cut(s) | 2788 |
| FbaI | TGATCA | 2 cut(s) | 1252, 2584 |
| FblI | GTMKAC | 3 cut(s) | 511, 1576, 2295 |
| Fnu4HI | GCNGC | 7 cut(s) | 95, 695, 996, 1113, 2596, 2745, 2958 |
| FokI | GGATG | 7 cut(s) | 46, 356, 1730, 2282, 2330, 2767, 2934 |
| FriOI | GRGCYC | 2 cut(s) | 1437, 1679 |
| Fsp4HI | GCNGC | 7 cut(s) | 95, 695, 996, 1113, 2596, 2745, 2958 |
| FspBI | CTAG | 8 cut(s) | 260, 794, 803, 1001, 1304, 1652, 2660, 2802 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 7 cut(s) | 95, 695, 996, 1113, 2596, 2745, 2958 |
| GsaI | CCCAGC | 2 cut(s) | 1674, 2937 |
| GsuI | CTGGAG | 1 cut(s) | 1430 |
| HaeIII | GGCC | 4 cut(s) | 761, 1571, 1950, 2690 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1I | GRCGYC | 1 cut(s) | 2475 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HincII | GTYRAC | 2 cut(s) | 910, 2277 |
| HindII | GTYRAC | 2 cut(s) | 910, 2277 |
| HinfI | GANTC | 8 cut(s) | 54, 65, 419, 1049, 2091, 2546, 2816, 3032 |
| HpaI | GTTAAC | 2 cut(s) | 910, 2277 |
| HphI | GGTGA | 5 cut(s) | 176, 505, 1238, 1976, 2884 |
| Hpy188I | TCNGA | 8 cut(s) | 64, 175, 1141, 1370, 1526, 1776, 1858, 2751 |
| Hpy99I | CGWCG | 3 cut(s) | 656, 1370, 2477 |
| HpyAV | CCTTC | 8 cut(s) | 28, 46, 310, 792, 1225, 2512, 2522, 2752 |
| HpyCH4III | ACNGT | 4 cut(s) | 632, 652, 772, 1631 |
| HpyCH4IV | ACGT | 3 cut(s) | 458, 1062, 2475 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 10, 48, 218, 317, 2177, 2423 |
| HpySE526I | ACGT | 3 cut(s) | 458, 1062, 2475 |
| Hsp92I | GRCGYC | 1 cut(s) | 2475 |
| HspAI | GCGC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 2 cut(s) | 1252, 2584 |
| KspAI | GTTAAC | 2 cut(s) | 910, 2277 |
| Kzo9I | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| LmnI | GCTCC | 3 cut(s) | 102, 1674, 1682 |
| Lsp1109I | GCAGC | 5 cut(s) | 681, 1007, 1099, 2582, 2944 |
| MaeI | CTAG | 8 cut(s) | 260, 794, 803, 1001, 1304, 1652, 2660, 2802 |
| MaeII | ACGT | 3 cut(s) | 458, 1062, 2475 |
| MaeIII | GTNAC | 4 cut(s) | 296, 766, 1861, 2476 |
| MalI | GATC | 9 cut(s) | 955, 1254, 1407, 2234, 2390, 2435, 2540, 2586, 2607 |
| MbiI | CCGCTC | 1 cut(s) | 97 |
| MboI | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| MfeI | CAATTG | 2 cut(s) | 598, 1319 |
| MflI | RGATCY | 5 cut(s) | 953, 1405, 2232, 2433, 2538 |
| MhlI | GDGCHC | 4 cut(s) | 574, 1437, 1679, 2290 |
| MlsI | TGGCCA | 1 cut(s) | 1571 |
| MluNI | TGGCCA | 1 cut(s) | 1571 |
| MlyI | GAGTC | 4 cut(s) | 48, 428, 1043, 2085 |
| MmeI | TCCRAC | 4 cut(s) | 624, 1348, 1459, 2876 |
| Mox20I | TGGCCA | 1 cut(s) | 1571 |
| Mph1103I | ATGCAT | 5 cut(s) | 784, 814, 1378, 1888, 2428 |
| MroXI | GAANNNNTTC | 1 cut(s) | 452 |
| MscI | TGGCCA | 1 cut(s) | 1571 |
| MslI | CAYNNNNRTG | 3 cut(s) | 525, 1752, 2952 |
| Msp20I | TGGCCA | 1 cut(s) | 1571 |
| MspR9I | CCNGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| MunI | CAATTG | 2 cut(s) | 598, 1319 |
| Mva1269I | GAATGC | 4 cut(s) | 1272, 1324, 1471, 1774 |
| MvaI | CCWGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 10, 48, 218, 317, 2177, 2423 |
| NdeI | CATATG | 1 cut(s) | 2788 |
| NdeII | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| NlaIV | GGNNCC | 2 cut(s) | 85, 1424 |
| NmeAIII | GCCGAG | 2 cut(s) | 337, 595 |
| NmuCI | GTSAC | 2 cut(s) | 766, 2476 |
| NsiI | ATGCAT | 5 cut(s) | 784, 814, 1378, 1888, 2428 |
| NspV | TTCGAA | 1 cut(s) | 1803 |
| PaeI | GCATGC | 4 cut(s) | 816, 881, 1890, 2602 |
| PaeR7I | CTCGAG | 1 cut(s) | 395 |
| PagI | TCATGA | 1 cut(s) | 2533 |
| PasI | CCCWGGG | 2 cut(s) | 223, 2577 |
| PceI | AGGCCT | 1 cut(s) | 1950 |
| PciI | ACATGT | 2 cut(s) | 2279, 2298 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2140 |
| PctI | GAATGC | 4 cut(s) | 1272, 1324, 1471, 1774 |
| PdmI | GAANNNNTTC | 1 cut(s) | 452 |
| PfeI | GAWTC | 4 cut(s) | 65, 2546, 2816, 3032 |
| PflFI | GACNNNGTC | 2 cut(s) | 2094, 2474 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2350 |
| PkrI | GCNGC | 7 cut(s) | 96, 696, 997, 1114, 2597, 2746, 2959 |
| PleI | GAGTC | 4 cut(s) | 48, 427, 1043, 2085 |
| PpsI | GAGTC | 4 cut(s) | 48, 427, 1043, 2085 |
| Ppu21I | YACGTR | 1 cut(s) | 1063 |
| PscI | ACATGT | 2 cut(s) | 2279, 2298 |
| Psp124BI | GAGCTC | 2 cut(s) | 1437, 1679 |
| Psp6I | CCWGG | 5 cut(s) | 222, 300, 2289, 2576, 2884 |
| PspEI | GGTNACC | 1 cut(s) | 296 |
| PspFI | CCCAGC | 2 cut(s) | 1670, 2933 |
| PspGI | CCWGG | 5 cut(s) | 222, 300, 2289, 2576, 2884 |
| PspN4I | GGNNCC | 2 cut(s) | 85, 1424 |
| PspPI | GGNCC | 4 cut(s) | 751, 1895, 2073, 2688 |
| PspXI | VCTCGAGB | 1 cut(s) | 395 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2755 |
| PsuI | RGATCY | 5 cut(s) | 953, 1405, 2232, 2433, 2538 |
| PsyI | GACNNNGTC | 2 cut(s) | 2094, 2474 |
| RsaI | GTAC | 6 cut(s) | 484, 1391, 1938, 2356, 2670, 2984 |
| RsaNI | GTAC | 6 cut(s) | 483, 1390, 1937, 2355, 2669, 2983 |
| RseI | CAYNNNNRTG | 3 cut(s) | 525, 1752, 2952 |
| SacI | GAGCTC | 2 cut(s) | 1437, 1679 |
| SatI | GCNGC | 7 cut(s) | 95, 695, 996, 1113, 2596, 2745, 2958 |
| Sau3AI | GATC | 9 cut(s) | 953, 1252, 1405, 2232, 2388, 2433, 2538, 2584, 2605 |
| Sau96I | GGNCC | 4 cut(s) | 751, 1895, 2073, 2688 |
| ScaI | AGTACT | 2 cut(s) | 1938, 2984 |
| SchI | GAGTC | 4 cut(s) | 48, 428, 1043, 2085 |
| ScrFI | CCNGG | 5 cut(s) | 224, 302, 2291, 2578, 2886 |
| SduI | GDGCHC | 4 cut(s) | 574, 1437, 1679, 2290 |
| Sfr274I | CTCGAG | 1 cut(s) | 395 |
| SfuI | TTCGAA | 1 cut(s) | 1803 |
| SinI | GGWCC | 3 cut(s) | 751, 1895, 2073 |
| SlaI | CTCGAG | 1 cut(s) | 395 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 525, 1752, 2952 |
| SmlI | CTYRAG | 4 cut(s) | 395, 545, 698, 985 |
| SmoI | CTYRAG | 4 cut(s) | 395, 545, 698, 985 |
| SnaBI | TACGTA | 1 cut(s) | 1063 |
| SphI | GCATGC | 4 cut(s) | 816, 881, 1890, 2602 |
| SseBI | AGGCCT | 1 cut(s) | 1950 |
| SsiI | CCGC | 6 cut(s) | 49, 95, 162, 741, 2076, 2744 |
| SspI | AATATT | 1 cut(s) | 1125 |
| SspMI | CTAG | 8 cut(s) | 260, 794, 803, 1001, 1304, 1652, 2660, 2802 |
| SstI | GAGCTC | 2 cut(s) | 1437, 1679 |
| StuI | AGGCCT | 1 cut(s) | 1950 |
| StyD4I | CCNGG | 5 cut(s) | 222, 300, 2289, 2576, 2884 |
| StyI | CCWWGG | 1 cut(s) | 1566 |
| TaaI | ACNGT | 4 cut(s) | 632, 652, 772, 1631 |
| TaiI | ACGT | 3 cut(s) | 461, 1065, 2478 |
| TatI | WGTACW | 3 cut(s) | 482, 1936, 2982 |
| TauI | GCSGC | 2 cut(s) | 97, 2747 |
| TfiI | GAWTC | 4 cut(s) | 65, 2546, 2816, 3032 |
| TscAI | CASTG | 9 cut(s) | 637, 642, 1611, 1634, 1759, 1917, 2188, 2503, 2700 |
| TseFI | GTSAC | 2 cut(s) | 766, 2476 |
| TseI | GCWGC | 5 cut(s) | 694, 995, 1112, 2595, 2957 |
| Tsp45I | GTSAC | 2 cut(s) | 766, 2476 |
| TspRI | CASTG | 9 cut(s) | 637, 642, 1611, 1634, 1759, 1917, 2188, 2503, 2700 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2094, 2474 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2350 |
| VneI | GTGCAC | 1 cut(s) | 570 |
| VpaK11BI | GGWCC | 3 cut(s) | 751, 1895, 2073 |
| XapI | RAATTY | 6 cut(s) | 117, 233, 1357, 2042, 2674, 2964 |
| XbaI | TCTAGA | 3 cut(s) | 1000, 1303, 1651 |
| XhoI | CTCGAG | 1 cut(s) | 395 |
| XmiI | GTMKAC | 3 cut(s) | 511, 1576, 2295 |
| XmnI | GAANNNNTTC | 1 cut(s) | 452 |
| XspI | CTAG | 8 cut(s) | 260, 794, 803, 1001, 1304, 1652, 2660, 2802 |
| ZraI | GACGTC | 1 cut(s) | 2476 |
| ZrmI | AGTACT | 2 cut(s) | 1938, 2984 |
| Zsp2I | ATGCAT | 5 cut(s) | 784, 814, 1378, 1888, 2428 |